Wall clock time and date at job start Mon Mar 30 2020 05:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00318 * 2 1 4 4 H 1.48491 * 109.47421 * 239.99780 * 3 2 1 5 5 H 1.48501 * 109.46695 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47275 * 119.99420 * 3 2 1 7 7 C 1.37879 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00069 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00039 * 0.02562 * 7 2 1 10 10 C 1.53511 * 114.17359 * 179.97438 * 9 7 2 11 11 N 1.47480 * 87.93440 * 220.14106 * 10 9 7 12 12 C 1.46894 * 111.00230 * 138.70338 * 11 10 9 13 13 C 1.50697 * 109.47626 * 169.99875 * 12 11 10 14 14 C 1.32559 * 120.00270 * 124.99825 * 13 12 11 15 15 C 1.47817 * 120.00483 * 180.02562 * 14 13 12 16 16 C 1.39527 * 120.14512 * 180.02562 * 15 14 13 17 17 C 1.37975 * 119.85673 * 179.97438 * 16 15 14 18 18 C 1.38339 * 120.14124 * 0.02562 * 17 16 15 19 19 C 1.38341 * 120.28811 * 359.97438 * 18 17 16 20 20 C 1.37983 * 120.14376 * 0.02562 * 19 18 17 21 21 C 1.47477 * 87.83446 * 27.00996 * 11 10 9 22 22 H 0.97000 * 119.99675 * 0.02562 * 1 2 3 23 23 H 1.09002 * 113.25746 * 312.95168 * 9 7 2 24 24 H 1.08999 * 113.47557 * 105.37425 * 10 9 7 25 25 H 1.08997 * 113.52874 * 334.91523 * 10 9 7 26 26 H 1.09008 * 109.47331 * 49.99611 * 12 11 10 27 27 H 1.09007 * 109.47173 * 290.00433 * 12 11 10 28 28 H 1.08003 * 119.99781 * 305.00672 * 13 12 11 29 29 H 1.08003 * 119.99948 * 0.02562 * 14 13 12 30 30 H 1.08002 * 120.07276 * 0.25063 * 16 15 14 31 31 H 1.08004 * 119.92672 * 179.97438 * 17 16 15 32 32 H 1.07995 * 119.85787 * 179.97438 * 18 17 16 33 33 H 1.08001 * 119.93142 * 179.97438 * 19 18 17 34 34 H 1.07993 * 120.07265 * 179.97438 * 20 19 18 35 35 H 1.08996 * 113.47776 * 87.76145 * 21 11 10 36 36 H 1.09004 * 113.47721 * 218.22243 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.1495 -3.7438 0.0005 11 7 1.2049 -4.3602 -0.9496 12 6 1.9204 -5.0902 -2.0046 13 6 0.9382 -5.9038 -2.8073 14 6 0.8754 -5.7574 -4.1233 15 6 -0.0883 -6.5550 -4.9106 16 6 -0.1566 -6.4036 -6.2960 17 6 -1.0580 -7.1516 -7.0251 18 6 -1.8934 -8.0498 -6.3854 19 6 -1.8308 -8.2047 -5.0122 20 6 -0.9337 -7.4627 -4.2714 21 6 0.8517 -2.9993 -1.3948 22 1 -0.4850 0.8401 -0.0004 23 1 0.4445 -2.5305 0.7332 24 1 2.1888 -4.2510 0.9645 25 1 3.1381 -3.5668 -0.4231 26 1 2.6573 -5.7536 -1.5518 27 1 2.4250 -4.3799 -2.6597 28 1 0.2854 -6.6062 -2.3103 29 1 1.5284 -5.0552 -4.6203 30 1 0.4979 -5.7057 -6.7970 31 1 -1.1121 -7.0350 -8.0975 32 1 -2.5976 -8.6326 -6.9606 33 1 -2.4859 -8.9072 -4.5186 34 1 -0.8861 -7.5842 -3.1994 35 1 1.4936 -2.6227 -2.1912 36 1 -0.2090 -2.8755 -1.6135 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597193629.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:02 Heat of formation + Delta-G solvation = 70.695494 kcal Electronic energy + Delta-G solvation = -16089.173635 eV Core-core repulsion = 13539.296743 eV Total energy + Delta-G solvation = -2549.876892 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.26752 -38.83826 -34.74665 -32.64213 -31.02923 -30.76959 -28.11806 -25.51844 -24.74017 -23.23690 -22.58589 -21.32772 -19.23472 -18.52908 -17.10839 -16.58331 -15.45665 -15.04918 -14.75171 -14.32890 -14.24765 -14.06535 -13.43777 -13.14932 -12.95408 -12.87226 -11.93078 -11.75748 -11.59034 -11.31821 -11.03857 -10.96906 -10.78999 -10.59616 -10.44158 -10.03240 -9.72867 -9.23586 -8.98782 -8.95037 -8.44673 -8.03092 -7.97168 -6.05605 -4.10506 0.97623 1.37530 2.62518 3.29744 3.35045 3.36953 3.93125 4.39652 4.68719 4.81374 4.91256 5.04429 5.09112 5.23436 5.37312 5.41772 5.43251 5.55300 5.79865 5.89739 5.95875 6.03195 6.12821 6.33974 6.34528 6.42885 6.46860 6.48792 6.66701 6.72143 6.79420 6.92159 6.99690 7.15354 7.20291 7.71781 7.90599 8.06978 8.36832 8.92510 9.54503 11.03963 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.035620 B = 0.003944 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.895229 B = 7097.652076 C = 7402.568091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.519 4.519 8 H 0.057 0.943 9 C 0.041 3.959 10 C -0.006 4.006 11 N -0.482 5.482 12 C 0.042 3.958 13 C -0.099 4.099 14 C -0.147 4.147 15 C -0.038 4.038 16 C -0.117 4.117 17 C -0.120 4.120 18 C -0.132 4.132 19 C -0.118 4.118 20 C -0.119 4.119 21 C 0.006 3.994 22 H 0.262 0.738 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.046 0.954 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.126 0.874 35 H 0.053 0.947 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.675 -13.814 -10.581 17.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.136 4.136 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.557 4.557 8 H 0.075 0.925 9 C 0.022 3.978 10 C -0.135 4.135 11 N -0.204 5.204 12 C -0.086 4.086 13 C -0.118 4.118 14 C -0.166 4.166 15 C -0.038 4.038 16 C -0.135 4.135 17 C -0.138 4.138 18 C -0.150 4.150 19 C -0.136 4.136 20 C -0.137 4.137 21 C -0.123 4.123 22 H 0.072 0.928 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.065 0.935 28 H 0.133 0.867 29 H 0.134 0.866 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.144 0.856 35 H 0.071 0.929 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.343 -14.183 -10.362 17.616 hybrid contribution 1.060 1.390 -0.539 1.830 sum -0.283 -12.792 -10.902 16.810 Atomic orbital electron populations 1.69958 1.06001 1.26881 1.49443 1.25020 0.94823 0.99160 0.94574 0.86673 0.79648 0.83098 0.78670 1.20247 1.21213 1.20137 1.20998 0.92708 0.90297 1.51671 0.92481 1.20091 0.94272 0.90791 0.92604 1.24020 0.95767 0.97752 0.95926 1.68843 1.27173 1.14358 1.10042 1.21768 0.94865 0.97240 0.94752 1.23378 0.97193 0.97178 0.94019 1.21613 0.99659 1.00874 0.94406 1.19130 0.95727 0.95713 0.93277 1.21272 0.99159 0.99747 0.93283 1.21060 0.96315 0.96709 0.99714 1.21145 0.99748 0.99299 0.94769 1.21076 0.98710 0.99616 0.94170 1.21380 0.95898 0.96283 1.00164 1.24111 1.00274 0.86604 1.01264 0.92780 0.91790 0.91938 0.92800 0.90777 0.93545 0.86723 0.86616 0.85996 0.86227 0.86395 0.86147 0.85645 0.92882 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.65 13.26 55.43 0.74 -24.92 16 2 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 3 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.14 8.83 -34.44 -0.30 -14.45 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.04 1.05 3.76 -91.24 -0.34 0.70 16 10 C -0.01 -0.13 7.25 -7.55 -0.05 -0.18 16 11 N -0.48 -9.78 6.32 -246.11 -1.55 -11.34 16 12 C 0.04 0.70 5.26 -4.98 -0.03 0.68 16 13 C -0.10 -1.50 9.27 -36.22 -0.34 -1.84 16 14 C -0.15 -2.08 9.52 -37.57 -0.36 -2.44 16 15 C -0.04 -0.52 5.87 -105.01 -0.62 -1.13 16 16 C -0.12 -1.40 9.79 -39.20 -0.38 -1.79 16 17 C -0.12 -1.28 10.03 -39.64 -0.40 -1.68 16 18 C -0.13 -1.36 10.04 -39.51 -0.40 -1.76 16 19 C -0.12 -1.30 10.03 -39.64 -0.40 -1.70 16 20 C -0.12 -1.51 9.40 -39.19 -0.37 -1.88 16 21 C 0.01 0.15 7.28 -7.55 -0.06 0.09 16 22 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 23 H 0.06 1.77 8.11 -51.93 -0.42 1.35 16 24 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.05 1.10 7.87 -51.93 -0.41 0.69 16 26 H 0.07 1.13 8.08 -51.92 -0.42 0.71 16 27 H 0.05 0.79 6.97 -51.93 -0.36 0.43 16 28 H 0.11 1.66 6.04 -52.48 -0.32 1.34 16 29 H 0.12 1.57 7.87 -52.48 -0.41 1.16 16 30 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 32 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.13 1.49 6.17 -52.49 -0.32 1.17 16 35 H 0.05 1.24 7.38 -51.93 -0.38 0.85 16 36 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 305.34 15.07 4.60 4.60 Total: -1.00 -28.91 305.34 -10.50 -39.42 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.13 Total: 1.82 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: -4.13 Total: -25.60 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: -0.82 Total: -36.26 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.91 -10.50 -39.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597193629.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.111 kcal (2) G-P(sol) polarization free energy of solvation -28.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds