Wall clock time and date at job start Mon Mar 30 2020 05:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00318 * 2 1 4 4 H 1.48491 * 109.47421 * 239.99780 * 3 2 1 5 5 H 1.48501 * 109.46695 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47275 * 119.99420 * 3 2 1 7 7 C 1.37879 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00069 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00039 * 0.02562 * 7 2 1 10 10 C 1.53511 * 114.17359 * 179.97438 * 9 7 2 11 11 N 1.47480 * 87.93440 * 220.14106 * 10 9 7 12 12 C 1.46894 * 111.00230 * 138.70338 * 11 10 9 13 13 C 1.50697 * 109.47626 * 169.99875 * 12 11 10 14 14 C 1.32559 * 120.00270 * 124.99825 * 13 12 11 15 15 C 1.47817 * 120.00483 * 180.02562 * 14 13 12 16 16 C 1.39527 * 120.14512 * 180.02562 * 15 14 13 17 17 C 1.37975 * 119.85673 * 179.97438 * 16 15 14 18 18 C 1.38339 * 120.14124 * 0.02562 * 17 16 15 19 19 C 1.38341 * 120.28811 * 359.97438 * 18 17 16 20 20 C 1.37983 * 120.14376 * 0.02562 * 19 18 17 21 21 C 1.47477 * 87.83446 * 27.00996 * 11 10 9 22 22 H 0.97000 * 119.99675 * 0.02562 * 1 2 3 23 23 H 1.09002 * 113.25746 * 312.95168 * 9 7 2 24 24 H 1.08999 * 113.47557 * 105.37425 * 10 9 7 25 25 H 1.08997 * 113.52874 * 334.91523 * 10 9 7 26 26 H 1.09008 * 109.47331 * 49.99611 * 12 11 10 27 27 H 1.09007 * 109.47173 * 290.00433 * 12 11 10 28 28 H 1.08003 * 119.99781 * 305.00672 * 13 12 11 29 29 H 1.08003 * 119.99948 * 0.02562 * 14 13 12 30 30 H 1.08002 * 120.07276 * 0.25063 * 16 15 14 31 31 H 1.08004 * 119.92672 * 179.97438 * 17 16 15 32 32 H 1.07995 * 119.85787 * 179.97438 * 18 17 16 33 33 H 1.08001 * 119.93142 * 179.97438 * 19 18 17 34 34 H 1.07993 * 120.07265 * 179.97438 * 20 19 18 35 35 H 1.08996 * 113.47776 * 87.76145 * 21 11 10 36 36 H 1.09004 * 113.47721 * 218.22243 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.1495 -3.7438 0.0005 11 7 1.2049 -4.3602 -0.9496 12 6 1.9204 -5.0902 -2.0046 13 6 0.9382 -5.9038 -2.8073 14 6 0.8754 -5.7574 -4.1233 15 6 -0.0883 -6.5550 -4.9106 16 6 -0.1566 -6.4036 -6.2960 17 6 -1.0580 -7.1516 -7.0251 18 6 -1.8934 -8.0498 -6.3854 19 6 -1.8308 -8.2047 -5.0122 20 6 -0.9337 -7.4627 -4.2714 21 6 0.8517 -2.9993 -1.3948 22 1 -0.4850 0.8401 -0.0004 23 1 0.4445 -2.5305 0.7332 24 1 2.1888 -4.2510 0.9645 25 1 3.1381 -3.5668 -0.4231 26 1 2.6573 -5.7536 -1.5518 27 1 2.4250 -4.3799 -2.6597 28 1 0.2854 -6.6062 -2.3103 29 1 1.5284 -5.0552 -4.6203 30 1 0.4979 -5.7057 -6.7970 31 1 -1.1121 -7.0350 -8.0975 32 1 -2.5976 -8.6326 -6.9606 33 1 -2.4859 -8.9072 -4.5186 34 1 -0.8861 -7.5842 -3.1994 35 1 1.4936 -2.6227 -2.1912 36 1 -0.2090 -2.8755 -1.6135 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597193629.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:02 Heat of formation + Delta-G solvation = 54.412407 kcal Electronic energy + Delta-G solvation = -16089.879723 eV Core-core repulsion = 13539.296743 eV Total energy + Delta-G solvation = -2550.582980 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.72592 -39.99506 -35.94821 -34.60599 -32.12929 -31.81095 -29.61961 -27.21913 -26.53105 -24.58988 -23.63125 -22.51090 -20.60792 -20.14217 -18.63305 -17.98635 -16.75673 -16.39559 -16.32272 -15.79110 -15.67104 -15.47164 -14.49600 -14.32473 -14.12123 -13.90327 -13.78841 -13.34642 -13.14463 -12.89627 -12.57048 -12.44604 -12.23368 -11.99875 -11.76752 -11.53369 -11.28196 -11.02964 -10.82471 -10.50495 -9.85283 -9.73262 -9.01174 -8.15599 -6.27646 0.00993 0.50907 1.43065 1.44586 1.52550 1.58004 2.42336 3.01439 3.13476 3.34004 3.78781 3.88518 4.10385 4.13703 4.24251 4.25540 4.30637 4.48232 4.50324 4.58144 4.66269 4.73592 4.78252 4.86479 4.95015 5.08218 5.15704 5.21802 5.38297 5.39125 5.55204 5.61314 5.61645 5.74371 5.83914 5.89434 6.11903 6.28585 6.37911 6.81972 7.41156 8.94080 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.035620 B = 0.003944 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.895229 B = 7097.652076 C = 7402.568091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.014 3.986 3 Si 0.959 3.041 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.533 4.533 8 H 0.061 0.939 9 C 0.021 3.979 10 C 0.009 3.991 11 N -0.480 5.480 12 C 0.045 3.955 13 C -0.121 4.121 14 C -0.133 4.133 15 C -0.068 4.068 16 C -0.126 4.126 17 C -0.125 4.125 18 C -0.129 4.129 19 C -0.126 4.126 20 C -0.134 4.134 21 C 0.019 3.981 22 H 0.263 0.737 23 H 0.030 0.970 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.093 0.907 27 H 0.045 0.955 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.132 0.868 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.125 0.875 35 H 0.050 0.950 36 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.113 -14.659 -12.000 18.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.185 4.185 3 Si 0.784 3.216 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.571 4.571 8 H 0.079 0.921 9 C 0.002 3.998 10 C -0.120 4.120 11 N -0.203 5.203 12 C -0.083 4.083 13 C -0.139 4.139 14 C -0.152 4.152 15 C -0.068 4.068 16 C -0.144 4.144 17 C -0.142 4.142 18 C -0.147 4.147 19 C -0.143 4.143 20 C -0.152 4.152 21 C -0.111 4.111 22 H 0.072 0.928 23 H 0.048 0.952 24 H 0.095 0.905 25 H 0.083 0.917 26 H 0.111 0.889 27 H 0.063 0.937 28 H 0.136 0.864 29 H 0.137 0.863 30 H 0.150 0.850 31 H 0.164 0.836 32 H 0.165 0.835 33 H 0.160 0.840 34 H 0.143 0.857 35 H 0.068 0.932 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.765 -15.047 -11.781 19.125 hybrid contribution 0.825 1.550 -0.184 1.765 sum 0.060 -13.497 -11.965 18.037 Atomic orbital electron populations 1.70095 1.07626 1.27698 1.50701 1.25861 0.95610 1.02826 0.94237 0.85596 0.78342 0.78564 0.79081 1.19366 1.21070 1.19262 1.21364 0.93087 0.91424 1.51272 0.92069 1.20045 0.94572 0.92235 0.92991 1.23855 0.95481 0.95607 0.97009 1.68764 1.27809 1.12742 1.10936 1.21779 0.95381 0.97185 0.93933 1.23231 0.98094 0.98281 0.94283 1.21768 0.99094 1.00087 0.94286 1.19243 0.96636 0.96864 0.94094 1.21524 0.99773 1.00231 0.92905 1.21428 0.95596 0.96101 1.01103 1.21566 0.99572 0.98808 0.94725 1.21400 0.98522 0.99637 0.94775 1.21549 0.96456 0.96702 1.00501 1.23827 0.98795 0.88520 0.99931 0.92829 0.95225 0.90529 0.91732 0.88897 0.93695 0.86373 0.86292 0.84960 0.83619 0.83542 0.84024 0.85715 0.93156 0.94035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.70 13.26 21.45 0.28 -54.41 16 2 C 0.01 0.78 5.46 84.66 0.46 1.25 16 3 Si 0.96 43.22 29.54 68.60 2.03 45.25 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.53 -29.35 8.83 25.60 0.23 -29.12 16 8 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 9 C 0.02 1.07 3.76 -11.20 -0.04 1.02 16 10 C 0.01 0.38 7.25 83.57 0.61 0.98 16 11 N -0.48 -19.43 6.32 -932.56 -5.89 -25.32 16 12 C 0.05 1.47 5.26 85.56 0.45 1.92 16 13 C -0.12 -3.60 9.27 24.53 0.23 -3.37 16 14 C -0.13 -3.74 9.52 23.66 0.23 -3.52 16 15 C -0.07 -1.79 5.87 -20.12 -0.12 -1.91 16 16 C -0.13 -2.86 9.79 22.52 0.22 -2.64 16 17 C -0.12 -2.34 10.03 22.23 0.22 -2.11 16 18 C -0.13 -2.30 10.04 22.32 0.22 -2.08 16 19 C -0.13 -2.53 10.03 22.23 0.22 -2.30 16 20 C -0.13 -3.29 9.40 22.52 0.21 -3.08 16 21 C 0.02 0.88 7.28 83.57 0.61 1.49 16 22 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 23 H 0.03 1.71 8.11 -2.39 -0.02 1.69 16 24 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 25 H 0.06 2.55 7.87 -2.39 -0.02 2.53 16 26 H 0.09 2.67 8.08 -2.38 -0.02 2.65 16 27 H 0.04 1.49 6.97 -2.38 -0.02 1.47 16 28 H 0.12 3.41 6.04 -2.91 -0.02 3.39 16 29 H 0.12 3.16 7.87 -2.91 -0.02 3.14 16 30 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 31 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 32 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 33 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 34 H 0.13 2.95 6.17 -2.91 -0.02 2.93 16 35 H 0.05 2.38 7.38 -2.39 -0.02 2.36 16 36 H 0.04 2.11 8.14 -2.38 -0.02 2.09 16 Total: -1.00 -62.31 305.34 1.21 -61.10 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 1.04 Total: 16.85 kcal Atomic # 6 Polarization: -47.22 SS G_CDS: 3.75 Total: -43.47 kcal Atomic # 7 Polarization: -74.13 SS G_CDS: -5.61 Total: -79.73 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -62.31 1.21 -61.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597193629.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.512 kcal (2) G-P(sol) polarization free energy of solvation -62.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds