Wall clock time and date at job start Mon Mar 30 2020 05:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30689 * 1 3 3 Si 1.86796 * 120.00207 * 2 1 4 4 H 1.48507 * 109.46825 * 240.00088 * 3 2 1 5 5 H 1.48502 * 109.47192 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47174 * 120.00199 * 3 2 1 7 7 C 1.40308 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00149 * 179.97438 * 7 2 1 9 9 C 1.40075 * 120.00256 * 359.97438 * 7 2 1 10 10 C 1.35033 * 120.00574 * 186.46193 * 9 7 2 11 11 C 1.50701 * 119.99637 * 6.07813 * 10 9 7 12 12 N 1.46899 * 109.46953 * 126.37413 * 11 10 9 13 13 C 1.47164 * 110.99818 * 170.98203 * 12 11 10 14 14 C 1.52898 * 108.50620 * 52.11698 * 13 12 11 15 15 C 1.50720 * 109.95607 * 50.35740 * 14 13 12 16 16 C 1.38678 * 118.48248 * 163.32358 * 15 14 13 17 17 C 1.38039 * 120.34795 * 179.75534 * 16 15 14 18 18 C 1.38263 * 119.82899 * 0.03384 * 17 16 15 19 19 C 1.38014 * 119.86383 * 0.32507 * 18 17 16 20 20 C 1.37824 * 121.66693 * 343.22517 * 15 14 13 21 21 C 1.46639 * 111.00064 * 293.95185 * 12 11 10 22 22 H 0.97001 * 119.99605 * 359.97438 * 1 2 3 23 23 H 1.08004 * 119.99635 * 6.46068 * 9 7 2 24 24 H 1.07999 * 119.99978 * 186.07936 * 10 9 7 25 25 H 1.09008 * 109.47086 * 6.37846 * 11 10 9 26 26 H 1.08999 * 109.47193 * 246.37541 * 11 10 9 27 27 H 1.09001 * 109.63382 * 171.82407 * 13 12 11 28 28 H 1.09007 * 109.63022 * 292.41228 * 13 12 11 29 29 H 1.08997 * 109.39220 * 170.51470 * 14 13 12 30 30 H 1.08999 * 109.38464 * 290.31766 * 14 13 12 31 31 H 1.08001 * 119.83274 * 359.77831 * 16 15 14 32 32 H 1.07998 * 120.08990 * 180.02562 * 17 16 15 33 33 H 1.07998 * 120.06476 * 180.02562 * 18 17 16 34 34 H 1.07997 * 119.81049 * 179.73497 * 19 18 17 35 35 H 1.08999 * 109.29701 * 168.80010 * 21 12 11 36 36 H 1.09000 * 109.12784 * 49.32005 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.0947 1.6962 -1.2126 5 1 1.2760 2.7464 0.0006 6 1 3.0947 1.6963 1.2125 7 6 2.0084 -1.2151 -0.0005 8 1 3.0884 -1.2152 -0.0010 9 6 1.3080 -2.4282 -0.0005 10 6 1.9767 -3.5940 0.1305 11 6 3.4568 -3.5859 0.4138 12 7 3.7321 -4.4017 1.6040 13 6 5.1794 -4.5941 1.7883 14 6 5.8587 -3.2246 1.7586 15 6 5.1582 -2.2823 2.7035 16 6 5.8133 -1.1215 3.0865 17 6 5.2055 -0.2290 3.9464 18 6 3.9372 -0.4939 4.4290 19 6 3.2874 -1.6524 4.0542 20 6 3.8948 -2.5481 3.1861 21 6 3.1441 -3.7965 2.8033 22 1 -0.4849 0.8401 0.0004 23 1 0.2331 -2.4311 -0.1054 24 1 1.4508 -4.5322 0.0324 25 1 3.7873 -2.5623 0.5905 26 1 3.9926 -3.9982 -0.4412 27 1 5.3657 -5.0745 2.7488 28 1 5.5718 -5.2150 0.9828 29 1 6.9008 -3.3309 2.0598 30 1 5.8137 -2.8203 0.7473 31 1 6.8041 -0.9145 2.7098 32 1 5.7193 0.6739 4.2416 33 1 3.4579 0.2020 5.1016 34 1 2.2985 -1.8606 4.4351 35 1 3.1888 -4.5104 3.6258 36 1 2.1032 -3.5435 2.6020 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687725643.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:05 Heat of formation + Delta-G solvation = 32.239169 kcal Electronic energy + Delta-G solvation = -17705.215364 eV Core-core repulsion = 15153.670881 eV Total energy + Delta-G solvation = -2551.544484 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.88865 -36.78903 -34.25838 -32.39355 -31.53097 -30.27462 -28.61960 -26.43882 -24.45276 -23.35486 -22.04028 -21.71528 -19.17196 -18.33641 -16.27177 -16.12406 -15.14916 -15.02728 -14.68122 -14.35670 -14.03111 -13.76007 -13.22100 -12.74822 -12.58953 -12.43217 -12.03159 -11.62505 -11.38353 -11.27188 -11.12783 -10.92001 -10.82047 -10.69059 -10.30604 -10.21643 -9.63879 -9.41953 -9.04538 -8.31246 -8.07125 -7.54886 -7.43205 -6.69898 -4.20518 1.80764 1.83374 3.00530 3.09433 3.15276 3.90122 4.02396 4.18749 4.81130 5.08252 5.26403 5.37143 5.40843 5.50481 5.51328 5.63551 5.82205 5.87020 5.99998 6.09715 6.24299 6.26431 6.40524 6.44192 6.57380 6.77006 6.78507 6.86961 6.92820 7.09747 7.19324 7.28981 7.46285 7.58890 7.75935 7.98867 8.03251 8.50195 8.74584 9.17437 9.33831 10.33439 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.018141 B = 0.010903 C = 0.008239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.068862 B = 2567.399158 C = 3397.652905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.077 3.923 3 Si 0.899 3.101 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.456 4.456 8 H 0.071 0.929 9 C 0.054 3.946 10 C -0.415 4.415 11 C 0.123 3.877 12 N -0.527 5.527 13 C 0.051 3.949 14 C -0.116 4.116 15 C -0.077 4.077 16 C -0.123 4.123 17 C -0.130 4.130 18 C -0.124 4.124 19 C -0.107 4.107 20 C -0.085 4.085 21 C 0.096 3.904 22 H 0.279 0.721 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.047 0.953 26 H 0.034 0.966 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.071 0.929 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.869 -1.077 6.874 11.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.486 4.486 8 H 0.089 0.911 9 C 0.033 3.967 10 C -0.438 4.438 11 C -0.001 4.001 12 N -0.248 5.248 13 C -0.078 4.078 14 C -0.155 4.155 15 C -0.077 4.077 16 C -0.142 4.142 17 C -0.149 4.149 18 C -0.143 4.143 19 C -0.126 4.126 20 C -0.087 4.087 21 C -0.033 4.033 22 H 0.090 0.910 23 H 0.095 0.905 24 H 0.086 0.914 25 H 0.065 0.935 26 H 0.053 0.947 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.089 0.911 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.429 -1.408 6.770 10.902 hybrid contribution 0.681 1.899 0.099 2.019 sum 9.110 0.490 6.869 11.420 Atomic orbital electron populations 1.69563 1.07585 1.29300 1.38444 1.26053 0.94671 1.01433 0.91754 0.86498 0.80249 0.80737 0.80131 1.19009 1.20461 1.18672 1.19585 0.94498 0.90689 1.43826 0.91083 1.19882 0.96241 0.92058 0.88489 1.21758 0.94011 0.95406 1.32640 1.20700 0.96747 0.94319 0.88383 1.62830 1.09160 1.49108 1.03723 1.22188 0.89499 0.94743 1.01379 1.21108 0.98888 0.96617 0.98863 1.19489 0.94323 0.95834 0.98093 1.20970 0.99776 0.94542 0.98866 1.20930 0.95833 0.99133 0.98959 1.20987 0.95234 0.97289 1.00747 1.21045 0.99429 0.94185 0.97893 1.20456 0.94025 0.98212 0.96007 1.21046 0.99649 0.90320 0.92254 0.91027 0.90472 0.91412 0.93518 0.94725 0.91581 0.90911 0.91274 0.90384 0.86890 0.86862 0.86717 0.86317 0.91132 0.88268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.17 12.88 55.57 0.72 -21.45 16 2 C 0.08 2.03 5.50 -17.26 -0.09 1.94 16 3 Si 0.90 19.97 29.56 -169.99 -5.03 14.95 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.46 -12.44 8.53 -38.12 -0.33 -12.77 16 8 H 0.07 1.95 5.69 -52.49 -0.30 1.65 16 9 C 0.05 1.48 9.38 -40.03 -0.38 1.11 16 10 C -0.42 -10.49 8.63 -35.45 -0.31 -10.79 16 11 C 0.12 2.77 4.17 -4.98 -0.02 2.75 16 12 N -0.53 -10.31 5.02 -237.62 -1.19 -11.50 16 13 C 0.05 0.81 6.03 -3.73 -0.02 0.79 16 14 C -0.12 -1.85 5.17 -27.93 -0.14 -1.99 16 15 C -0.08 -1.38 5.05 -104.60 -0.53 -1.91 16 16 C -0.12 -2.04 9.66 -39.49 -0.38 -2.42 16 17 C -0.13 -2.10 10.05 -39.65 -0.40 -2.50 16 18 C -0.12 -2.07 10.05 -39.65 -0.40 -2.47 16 19 C -0.11 -1.93 9.65 -39.48 -0.38 -2.31 16 20 C -0.09 -1.61 5.21 -104.63 -0.54 -2.15 16 21 C 0.10 1.82 5.43 -5.16 -0.03 1.80 16 22 H 0.28 6.92 8.29 -40.82 -0.34 6.58 16 23 H 0.08 2.21 7.44 -52.48 -0.39 1.82 16 24 H 0.07 1.72 8.06 -52.49 -0.42 1.30 16 25 H 0.05 1.12 3.20 -51.92 -0.17 0.96 16 26 H 0.03 0.76 8.09 -51.93 -0.42 0.34 16 27 H 0.07 0.97 8.05 -51.93 -0.42 0.55 16 28 H 0.07 1.08 8.14 -51.92 -0.42 0.65 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.08 1.32 7.04 -51.93 -0.37 0.96 16 31 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 33 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 34 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.10 2.13 6.96 -51.93 -0.36 1.77 16 LS Contribution 290.73 15.07 4.38 4.38 Total: -1.00 -28.17 290.73 -10.01 -38.18 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -4.94 Total: 6.38 kcal Atomic # 6 Polarization: -26.98 SS G_CDS: -3.95 Total: -30.93 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: -0.48 Total: -32.96 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.03 Total: 14.95 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.17 -10.01 -38.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687725643.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.419 kcal (2) G-P(sol) polarization free energy of solvation -28.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds