Wall clock time and date at job start Mon Mar 30 2020 05:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30691 * 1 3 3 Si 1.86798 * 120.00382 * 2 1 4 4 H 1.48499 * 109.47235 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47214 * 300.00810 * 3 2 1 6 6 H 1.48499 * 109.46762 * 60.00248 * 3 2 1 7 7 C 1.40309 * 119.99588 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99838 * 179.97438 * 7 2 1 9 9 C 1.40066 * 120.00247 * 359.97438 * 7 2 1 10 10 C 1.35040 * 120.00267 * 186.57677 * 9 7 2 11 11 C 1.50699 * 119.99629 * 5.99909 * 10 9 7 12 12 N 1.46901 * 109.47036 * 126.40954 * 11 10 9 13 13 C 1.46424 * 111.00428 * 167.22312 * 12 11 10 14 14 C 1.53378 * 108.66463 * 72.19203 * 13 12 11 15 15 C 1.53042 * 107.92945 * 68.23111 * 14 13 12 16 16 C 1.50803 * 109.66063 * 312.69706 * 15 14 13 17 17 C 1.38616 * 118.12651 * 195.75571 * 16 15 14 18 18 C 1.38043 * 120.48744 * 180.70669 * 17 16 15 19 19 C 1.38314 * 119.88875 * 359.39918 * 18 17 16 20 20 C 1.37813 * 119.95359 * 0.14599 * 19 18 17 21 21 C 1.38375 * 122.01173 * 15.65768 * 16 15 14 22 22 H 0.96998 * 119.99871 * 359.97438 * 1 2 3 23 23 H 1.07998 * 119.99968 * 6.57813 * 9 7 2 24 24 H 1.07992 * 120.00087 * 186.00562 * 10 9 7 25 25 H 1.08995 * 109.47229 * 6.41534 * 11 10 9 26 26 H 1.08994 * 109.47354 * 246.41038 * 11 10 9 27 27 H 1.08993 * 109.60853 * 191.95008 * 13 12 11 28 28 H 1.09002 * 109.60007 * 312.27492 * 13 12 11 29 29 H 1.08994 * 109.77119 * 187.84691 * 14 13 12 30 30 H 1.09007 * 109.76771 * 308.57843 * 14 13 12 31 31 H 1.09008 * 109.43736 * 72.75536 * 15 14 13 32 32 H 1.09006 * 109.44059 * 192.67478 * 15 14 13 33 33 H 1.08001 * 119.75615 * 0.42911 * 17 16 15 34 34 H 1.08000 * 120.06085 * 179.67574 * 18 17 16 35 35 H 1.07997 * 120.02685 * 180.13171 * 19 18 17 36 36 H 1.07997 * 119.79451 * 180.12201 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.7010 1.3462 -0.0006 5 1 1.8822 2.3965 -1.2124 6 1 1.8823 2.3963 1.2125 7 6 2.0084 -1.2152 -0.0005 8 1 3.0884 -1.2152 -0.0010 9 6 1.3080 -2.4282 -0.0005 10 6 1.9765 -3.5939 0.1329 11 6 3.4565 -3.5854 0.4169 12 7 3.7311 -4.3999 1.6082 13 6 5.1647 -4.6658 1.7431 14 6 5.8657 -3.3708 2.1722 15 6 5.4229 -3.0464 3.6008 16 6 3.9237 -3.1705 3.7078 17 6 3.2981 -2.6049 4.8078 18 6 1.9297 -2.7022 4.9621 19 6 1.1733 -3.3574 4.0073 20 6 1.7872 -3.9141 2.9062 21 6 3.1714 -3.8235 2.7474 22 1 -0.4850 0.8400 0.0004 23 1 0.2333 -2.4312 -0.1073 24 1 1.4506 -4.5321 0.0360 25 1 3.7869 -2.5617 0.5927 26 1 3.9927 -3.9987 -0.4373 27 1 5.3244 -5.4356 2.4979 28 1 5.5658 -5.0022 0.7870 29 1 6.9464 -3.5098 2.1438 30 1 5.5808 -2.5584 1.5037 31 1 5.8949 -3.7428 4.2939 32 1 5.7208 -2.0280 3.8506 33 1 3.8860 -2.0883 5.5520 34 1 1.4500 -2.2635 5.8246 35 1 0.1024 -3.4329 4.1247 36 1 1.1939 -4.4234 2.1613 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687725644.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:18 Heat of formation + Delta-G solvation = 32.696837 kcal Electronic energy + Delta-G solvation = -17644.463098 eV Core-core repulsion = 15092.938460 eV Total energy + Delta-G solvation = -2551.524638 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.90894 -36.36527 -34.60583 -33.28328 -31.08761 -29.73225 -29.06483 -26.40620 -24.42315 -23.16837 -22.51124 -21.27492 -19.24410 -18.42756 -16.69436 -15.70406 -15.47551 -15.00750 -14.76219 -14.11471 -13.83781 -13.45882 -13.05207 -12.93485 -12.65443 -12.41614 -12.17004 -11.74046 -11.43028 -11.31532 -11.13649 -10.84201 -10.78237 -10.57869 -10.23653 -10.11108 -9.63510 -9.48600 -9.21076 -8.39933 -8.05346 -7.53187 -7.05321 -6.74448 -4.25061 2.06268 2.16372 2.93364 3.08907 3.14386 3.84347 3.98301 4.43963 4.71269 5.15859 5.17937 5.28801 5.47727 5.56316 5.70690 5.73093 5.84804 5.96309 6.00105 6.13731 6.20007 6.31027 6.42827 6.53197 6.55877 6.65721 6.82008 7.05912 7.09944 7.19866 7.23830 7.27115 7.49023 7.56956 7.84128 7.93282 8.26658 8.44158 8.69081 9.11978 9.28079 10.28782 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.019562 B = 0.008874 C = 0.008425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.007816 B = 3154.492856 C = 3322.542838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.075 3.925 3 Si 0.904 3.096 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.457 4.457 8 H 0.072 0.928 9 C 0.062 3.938 10 C -0.418 4.418 11 C 0.136 3.864 12 N -0.504 5.504 13 C 0.057 3.943 14 C -0.159 4.159 15 C -0.070 4.070 16 C -0.135 4.135 17 C -0.116 4.116 18 C -0.146 4.146 19 C -0.116 4.116 20 C -0.086 4.086 21 C 0.140 3.860 22 H 0.279 0.721 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.039 -3.216 6.524 10.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.488 4.488 8 H 0.090 0.910 9 C 0.041 3.959 10 C -0.441 4.441 11 C 0.014 3.986 12 N -0.220 5.220 13 C -0.071 4.071 14 C -0.198 4.198 15 C -0.108 4.108 16 C -0.138 4.138 17 C -0.135 4.135 18 C -0.164 4.164 19 C -0.135 4.135 20 C -0.106 4.106 21 C 0.043 3.957 22 H 0.090 0.910 23 H 0.096 0.904 24 H 0.088 0.912 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.638 -3.517 6.372 9.850 hybrid contribution 0.604 1.658 0.150 1.771 sum 7.242 -1.860 6.522 9.922 Atomic orbital electron populations 1.69573 1.07630 1.29253 1.37923 1.26097 0.94738 1.01608 0.91693 0.86318 0.80948 0.81311 0.78474 1.18521 1.19889 1.19899 1.19682 0.94581 0.90828 1.43664 0.90988 1.19851 0.96237 0.91971 0.87837 1.21680 0.93739 0.95524 1.33127 1.20732 0.97355 0.93539 0.86986 1.58989 1.12044 1.47667 1.03349 1.22149 0.87591 0.96123 1.01282 1.22199 1.00157 1.00214 0.97248 1.20406 0.92156 1.01321 0.96879 1.19812 0.95488 1.00803 0.97689 1.20713 0.94659 1.00710 0.97411 1.20828 0.93933 1.01937 0.99735 1.20919 0.99192 0.98781 0.94597 1.21252 0.93491 0.99487 0.96332 1.18357 0.93158 0.93339 0.90856 0.91013 0.90391 0.91179 0.93806 0.93956 0.91347 0.90762 0.91581 0.91146 0.91488 0.91371 0.87382 0.87242 0.86849 0.85044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.84 12.88 55.57 0.72 -21.13 16 2 C 0.08 1.96 5.50 -17.26 -0.09 1.87 16 3 Si 0.90 19.63 29.56 -169.99 -5.03 14.60 16 4 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.46 -12.38 8.53 -38.12 -0.32 -12.70 16 8 H 0.07 1.94 5.69 -52.48 -0.30 1.64 16 9 C 0.06 1.67 9.32 -40.03 -0.37 1.29 16 10 C -0.42 -10.29 6.89 -35.45 -0.24 -10.53 16 11 C 0.14 3.02 4.73 -4.98 -0.02 3.00 16 12 N -0.50 -10.12 4.55 -172.66 -0.79 -10.90 16 13 C 0.06 0.92 5.81 -3.89 -0.02 0.90 16 14 C -0.16 -2.43 6.03 -26.51 -0.16 -2.59 16 15 C -0.07 -1.08 5.81 -27.81 -0.16 -1.24 16 16 C -0.14 -2.51 5.74 -104.38 -0.60 -3.11 16 17 C -0.12 -2.03 9.63 -39.51 -0.38 -2.41 16 18 C -0.15 -2.55 10.05 -39.62 -0.40 -2.95 16 19 C -0.12 -2.21 10.04 -39.71 -0.40 -2.61 16 20 C -0.09 -1.81 8.41 -39.22 -0.33 -2.14 16 21 C 0.14 2.88 5.08 -83.85 -0.43 2.46 16 22 H 0.28 6.81 8.29 -40.82 -0.34 6.47 16 23 H 0.08 2.20 7.44 -52.49 -0.39 1.81 16 24 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 25 H 0.04 1.06 4.33 -51.93 -0.22 0.83 16 26 H 0.04 0.90 7.84 -51.93 -0.41 0.49 16 27 H 0.07 1.04 8.11 -51.93 -0.42 0.61 16 28 H 0.07 1.11 7.85 -51.93 -0.41 0.70 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.22 6.69 -51.93 -0.35 0.88 16 31 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 35 H 0.11 1.92 8.06 -52.49 -0.42 1.50 16 36 H 0.13 2.88 6.33 -52.49 -0.33 2.55 16 LS Contribution 288.85 15.07 4.35 4.35 Total: -1.00 -27.73 288.85 -9.59 -37.32 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -4.91 Total: 6.52 kcal Atomic # 6 Polarization: -26.83 SS G_CDS: -3.94 Total: -30.77 kcal Atomic # 7 Polarization: -31.96 SS G_CDS: -0.07 Total: -32.03 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.60 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.73 -9.59 -37.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687725644.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.016 kcal (2) G-P(sol) polarization free energy of solvation -27.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds