Wall clock time and date at job start Mon Mar 30 2020 05:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30691 * 1 3 3 Si 1.86798 * 120.00382 * 2 1 4 4 H 1.48499 * 109.47235 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47214 * 300.00810 * 3 2 1 6 6 H 1.48499 * 109.46762 * 60.00248 * 3 2 1 7 7 C 1.40309 * 119.99588 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99838 * 179.97438 * 7 2 1 9 9 C 1.40066 * 120.00247 * 359.97438 * 7 2 1 10 10 C 1.35040 * 120.00267 * 186.57677 * 9 7 2 11 11 C 1.50699 * 119.99629 * 5.99909 * 10 9 7 12 12 N 1.46901 * 109.47036 * 126.40954 * 11 10 9 13 13 C 1.46424 * 111.00428 * 167.22312 * 12 11 10 14 14 C 1.53378 * 108.66463 * 72.19203 * 13 12 11 15 15 C 1.53042 * 107.92945 * 68.23111 * 14 13 12 16 16 C 1.50803 * 109.66063 * 312.69706 * 15 14 13 17 17 C 1.38616 * 118.12651 * 195.75571 * 16 15 14 18 18 C 1.38043 * 120.48744 * 180.70669 * 17 16 15 19 19 C 1.38314 * 119.88875 * 359.39918 * 18 17 16 20 20 C 1.37813 * 119.95359 * 0.14599 * 19 18 17 21 21 C 1.38375 * 122.01173 * 15.65768 * 16 15 14 22 22 H 0.96998 * 119.99871 * 359.97438 * 1 2 3 23 23 H 1.07998 * 119.99968 * 6.57813 * 9 7 2 24 24 H 1.07992 * 120.00087 * 186.00562 * 10 9 7 25 25 H 1.08995 * 109.47229 * 6.41534 * 11 10 9 26 26 H 1.08994 * 109.47354 * 246.41038 * 11 10 9 27 27 H 1.08993 * 109.60853 * 191.95008 * 13 12 11 28 28 H 1.09002 * 109.60007 * 312.27492 * 13 12 11 29 29 H 1.08994 * 109.77119 * 187.84691 * 14 13 12 30 30 H 1.09007 * 109.76771 * 308.57843 * 14 13 12 31 31 H 1.09008 * 109.43736 * 72.75536 * 15 14 13 32 32 H 1.09006 * 109.44059 * 192.67478 * 15 14 13 33 33 H 1.08001 * 119.75615 * 0.42911 * 17 16 15 34 34 H 1.08000 * 120.06085 * 179.67574 * 18 17 16 35 35 H 1.07997 * 120.02685 * 180.13171 * 19 18 17 36 36 H 1.07997 * 119.79451 * 180.12201 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.7010 1.3462 -0.0006 5 1 1.8822 2.3965 -1.2124 6 1 1.8823 2.3963 1.2125 7 6 2.0084 -1.2152 -0.0005 8 1 3.0884 -1.2152 -0.0010 9 6 1.3080 -2.4282 -0.0005 10 6 1.9765 -3.5939 0.1329 11 6 3.4565 -3.5854 0.4169 12 7 3.7311 -4.3999 1.6082 13 6 5.1647 -4.6658 1.7431 14 6 5.8657 -3.3708 2.1722 15 6 5.4229 -3.0464 3.6008 16 6 3.9237 -3.1705 3.7078 17 6 3.2981 -2.6049 4.8078 18 6 1.9297 -2.7022 4.9621 19 6 1.1733 -3.3574 4.0073 20 6 1.7872 -3.9141 2.9062 21 6 3.1714 -3.8235 2.7474 22 1 -0.4850 0.8400 0.0004 23 1 0.2333 -2.4312 -0.1073 24 1 1.4506 -4.5321 0.0360 25 1 3.7869 -2.5617 0.5927 26 1 3.9927 -3.9987 -0.4373 27 1 5.3244 -5.4356 2.4979 28 1 5.5658 -5.0022 0.7870 29 1 6.9464 -3.5098 2.1438 30 1 5.5808 -2.5584 1.5037 31 1 5.8949 -3.7428 4.2939 32 1 5.7208 -2.0280 3.8506 33 1 3.8860 -2.0883 5.5520 34 1 1.4500 -2.2635 5.8246 35 1 0.1024 -3.4329 4.1247 36 1 1.1939 -4.4234 2.1613 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687725644.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:18 Heat of formation + Delta-G solvation = 18.499407 kcal Electronic energy + Delta-G solvation = -17645.078745 eV Core-core repulsion = 15092.938460 eV Total energy + Delta-G solvation = -2552.140285 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.34938 -37.84154 -36.45104 -34.88344 -32.93683 -31.10610 -30.53231 -28.21602 -26.14732 -24.75433 -23.86069 -22.74146 -20.98233 -20.06835 -18.52819 -17.29143 -16.98119 -16.52978 -16.47326 -15.58597 -15.34885 -14.99093 -14.66523 -14.52479 -14.17664 -13.86940 -13.69835 -13.20566 -13.09864 -12.90885 -12.71850 -12.47963 -12.25449 -12.10472 -11.83821 -11.49328 -11.40063 -11.36119 -11.11462 -9.95925 -9.69545 -9.36457 -8.70320 -8.57710 -6.30088 0.60828 0.68801 1.19746 1.32517 1.47060 1.92304 2.18001 2.92761 3.21809 3.48539 3.90852 3.94744 4.06346 4.21838 4.34130 4.47606 4.56586 4.62982 4.70181 4.75713 4.84212 4.88969 4.93355 5.01160 5.06248 5.19056 5.24620 5.29080 5.37018 5.49291 5.64231 5.71627 5.78201 5.83006 6.07932 6.27819 6.47169 6.60709 6.79025 7.07059 7.21655 8.35819 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.019562 B = 0.008874 C = 0.008425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.007816 B = 3154.492856 C = 3322.542838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.030 3.970 3 Si 0.976 3.024 4 H -0.259 1.259 5 H -0.261 1.261 6 H -0.266 1.266 7 C -0.481 4.481 8 H 0.070 0.930 9 C 0.039 3.961 10 C -0.400 4.400 11 C 0.148 3.852 12 N -0.514 5.514 13 C 0.052 3.948 14 C -0.154 4.154 15 C -0.070 4.070 16 C -0.143 4.143 17 C -0.119 4.119 18 C -0.145 4.145 19 C -0.132 4.132 20 C -0.115 4.115 21 C 0.113 3.887 22 H 0.288 0.712 23 H 0.051 0.949 24 H 0.062 0.938 25 H 0.026 0.974 26 H 0.053 0.947 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.044 0.956 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.123 0.877 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.506 -2.191 8.093 12.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.183 4.183 3 Si 0.797 3.203 4 H -0.183 1.183 5 H -0.185 1.185 6 H -0.191 1.191 7 C -0.511 4.511 8 H 0.088 0.912 9 C 0.018 3.982 10 C -0.422 4.422 11 C 0.025 3.975 12 N -0.231 5.231 13 C -0.075 4.075 14 C -0.193 4.193 15 C -0.107 4.107 16 C -0.146 4.146 17 C -0.137 4.137 18 C -0.164 4.164 19 C -0.151 4.151 20 C -0.135 4.135 21 C 0.017 3.983 22 H 0.099 0.901 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.044 0.956 26 H 0.071 0.929 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.120 0.880 30 H 0.062 0.938 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.161 0.839 34 H 0.158 0.842 35 H 0.141 0.859 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 9.101 -2.516 7.946 12.341 hybrid contribution -0.207 1.197 -0.278 1.246 sum 8.895 -1.319 7.667 11.817 Atomic orbital electron populations 1.69637 1.09082 1.30740 1.38470 1.26957 0.95561 1.04969 0.90810 0.85247 0.79387 0.76582 0.79106 1.18263 1.18496 1.19056 1.19772 0.94491 0.91559 1.45260 0.91188 1.19773 0.95014 0.93257 0.90133 1.21822 0.95342 0.94393 1.30688 1.20477 0.95204 0.93195 0.88614 1.58803 1.14782 1.47043 1.02441 1.22318 0.85267 0.97258 1.02623 1.22164 1.02138 0.98375 0.96635 1.20515 0.89814 1.02875 0.97466 1.20277 0.97535 0.99615 0.97158 1.21175 0.94926 0.99986 0.97615 1.21224 0.94346 1.00849 0.99965 1.21153 1.00093 0.99118 0.94706 1.21241 0.94245 1.00950 0.97015 1.18551 0.93185 0.94796 0.91803 0.90133 0.93121 0.91976 0.95605 0.92912 0.89818 0.89563 0.88022 0.93762 0.88783 0.90055 0.83946 0.84172 0.85896 0.87645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.60 12.88 21.89 0.28 -46.32 16 2 C 0.03 1.60 5.50 85.37 0.47 2.07 16 3 Si 0.98 40.00 29.56 68.60 2.03 42.03 16 4 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 5 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 6 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.48 -26.78 8.53 23.22 0.20 -26.58 16 8 H 0.07 3.85 5.69 -2.91 -0.02 3.84 16 9 C 0.04 2.22 9.32 21.98 0.20 2.42 16 10 C -0.40 -20.57 6.89 24.95 0.17 -20.40 16 11 C 0.15 6.69 4.73 85.56 0.40 7.10 16 12 N -0.51 -20.54 4.55 -700.17 -3.19 -23.73 16 13 C 0.05 1.60 5.81 86.52 0.50 2.10 16 14 C -0.15 -4.26 6.03 30.74 0.19 -4.07 16 15 C -0.07 -1.89 5.81 29.89 0.17 -1.72 16 16 C -0.14 -5.04 5.74 -19.71 -0.11 -5.15 16 17 C -0.12 -3.81 9.63 22.31 0.21 -3.59 16 18 C -0.15 -4.83 10.05 22.24 0.22 -4.61 16 19 C -0.13 -5.07 10.04 22.19 0.22 -4.85 16 20 C -0.11 -4.99 8.41 22.50 0.19 -4.80 16 21 C 0.11 4.66 5.08 38.30 0.19 4.86 16 22 H 0.29 14.21 8.29 -92.71 -0.77 13.44 16 23 H 0.05 3.07 7.44 -2.91 -0.02 3.04 16 24 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 25 H 0.03 1.27 4.33 -2.39 -0.01 1.26 16 26 H 0.05 2.24 7.84 -2.39 -0.02 2.22 16 27 H 0.08 2.30 8.11 -2.39 -0.02 2.28 16 28 H 0.09 2.38 7.85 -2.39 -0.02 2.36 16 29 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.04 1.46 6.69 -2.38 -0.02 1.44 16 31 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 32 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 33 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 34 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 35 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16 36 H 0.11 4.97 6.33 -2.91 -0.02 4.95 16 Total: -1.00 -61.89 288.85 3.43 -58.46 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: 1.06 Total: 26.78 kcal Atomic # 6 Polarization: -60.46 SS G_CDS: 3.24 Total: -57.22 kcal Atomic # 7 Polarization: -67.15 SS G_CDS: -2.90 Total: -70.05 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Total: -61.89 3.43 -58.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687725644.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.957 kcal (2) G-P(sol) polarization free energy of solvation -61.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds