Wall clock time and date at job start Mon Mar 30 2020 05:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86800 * 119.99781 * 2 1 4 4 H 1.48500 * 109.47111 * 274.51370 * 3 2 1 5 5 H 1.48494 * 109.47184 * 34.51186 * 3 2 1 6 6 H 1.48495 * 109.47132 * 154.51109 * 3 2 1 7 7 C 1.39866 * 120.00516 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00048 * 197.99143 * 7 2 1 9 9 C 1.41139 * 119.99739 * 17.98538 * 7 2 1 10 10 C 1.40885 * 120.15566 * 25.21466 * 9 7 2 11 11 C 1.36343 * 119.83322 * 180.25308 * 10 9 7 12 12 C 1.39566 * 120.16156 * 359.49976 * 11 10 9 13 13 N 1.38859 * 119.84205 * 180.25274 * 12 11 10 14 14 C 1.46493 * 120.00032 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.47181 * 180.02562 * 14 13 12 16 16 C 1.54635 * 111.03819 * 287.02424 * 15 14 13 17 17 C 1.51099 * 104.72733 * 217.33124 * 16 15 14 18 18 C 1.30526 * 111.10165 * 16.44409 * 17 16 15 19 19 C 1.51095 * 111.10681 * 359.97438 * 18 17 16 20 20 C 1.39570 * 120.31649 * 0.23627 * 12 11 10 21 21 C 1.36343 * 120.15809 * 0.02562 * 20 12 11 22 22 H 0.97000 * 120.00294 * 359.97438 * 1 2 3 23 23 H 1.08003 * 120.08446 * 0.02562 * 10 9 7 24 24 H 1.08002 * 119.91789 * 179.77968 * 11 10 9 25 25 H 0.97003 * 119.99491 * 0.02562 * 13 12 11 26 26 H 1.09000 * 109.47429 * 300.00311 * 14 13 12 27 27 H 1.09005 * 109.47194 * 60.00282 * 14 13 12 28 28 H 1.08995 * 110.91416 * 51.03535 * 15 14 13 29 29 H 1.09001 * 110.38713 * 336.14896 * 16 15 14 30 30 H 1.09008 * 110.38601 * 98.52226 * 16 15 14 31 31 H 1.07995 * 124.44930 * 196.45561 * 17 16 15 32 32 H 1.08005 * 124.44364 * 180.02562 * 18 17 16 33 33 H 1.09001 * 110.39169 * 224.75812 * 19 18 17 34 34 H 1.09003 * 110.38635 * 102.37731 * 19 18 17 35 35 H 1.07994 * 119.91785 * 180.02562 * 20 12 11 36 36 H 1.08002 * 120.07744 * 180.02562 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.3951 2.1016 -1.3957 5 1 1.4914 2.6232 0.7932 6 1 3.5849 1.4146 0.6025 7 6 2.0085 -1.2112 -0.0005 8 1 3.0489 -1.2341 0.2883 9 6 1.3546 -2.4035 -0.3785 10 6 0.2343 -2.3565 -1.2315 11 6 -0.3956 -3.5119 -1.5883 12 6 0.0733 -4.7398 -1.1190 13 7 -0.5701 -5.9129 -1.4908 14 6 -0.0806 -7.2037 -1.0008 15 6 -0.9598 -8.3264 -1.5553 16 6 -2.3411 -8.3443 -0.8604 17 6 -2.6834 -9.8097 -0.7238 18 6 -1.6257 -10.5566 -0.8883 19 6 -0.4019 -9.7140 -1.1627 20 6 1.1859 -4.7945 -0.2782 21 6 1.8224 -3.6467 0.0911 22 1 -0.4850 0.8400 0.0004 23 1 -0.1270 -1.4073 -1.5989 24 1 -1.2567 -3.4771 -2.2392 25 1 -1.3432 -5.8776 -2.0756 26 1 0.9477 -7.3514 -1.3307 27 1 -0.1180 -7.2168 0.0885 28 1 -1.0661 -8.2393 -2.6365 29 1 -2.2782 -7.8758 0.1218 30 1 -3.0831 -7.8370 -1.4772 31 1 -3.6731 -10.1892 -0.5173 32 1 -1.6255 -11.6354 -0.8360 33 1 0.1747 -10.1382 -1.9847 34 1 0.2138 -9.6356 -0.2666 35 1 1.5435 -5.7482 0.0808 36 1 2.6835 -3.6905 0.7415 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692035001.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:01 Heat of formation + Delta-G solvation = 30.627817 kcal Electronic energy + Delta-G solvation = -16352.825954 eV Core-core repulsion = 13801.211597 eV Total energy + Delta-G solvation = -2551.614357 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.05999 -37.69996 -34.90226 -32.95069 -30.41439 -29.34695 -28.34143 -27.96678 -25.00924 -23.59926 -21.08885 -20.17992 -19.81652 -18.82433 -17.14127 -16.33424 -15.83108 -15.50187 -14.92144 -14.21080 -13.76233 -13.40177 -12.79133 -12.74805 -12.47473 -12.22631 -11.95779 -11.81098 -11.72485 -11.28321 -11.15740 -11.11282 -10.93362 -10.78848 -10.67811 -10.40911 -9.62672 -9.26536 -9.19426 -8.98695 -8.50176 -7.45791 -6.61766 -6.34794 -4.00556 2.15073 2.93674 3.13042 3.17291 3.20980 3.38551 4.07825 4.22903 4.57204 4.69298 4.79483 4.95329 5.18746 5.28764 5.59149 5.65507 5.71529 5.79714 5.84905 5.90958 5.97525 6.12973 6.30821 6.34022 6.35617 6.41896 6.78484 6.89256 7.09830 7.23691 7.34594 7.62724 7.69708 7.83321 8.18211 8.37247 8.53046 8.72103 8.83844 9.09030 9.18524 10.40451 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.068038 B = 0.003966 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.438081 B = 7057.837287 C = 7277.256239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.075 3.925 3 Si 0.903 3.097 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.468 4.468 8 H 0.072 0.928 9 C 0.074 3.926 10 C -0.122 4.122 11 C -0.164 4.164 12 C 0.093 3.907 13 N -0.761 5.761 14 C 0.149 3.851 15 C -0.103 4.103 16 C -0.097 4.097 17 C -0.166 4.166 18 C -0.172 4.172 19 C -0.094 4.094 20 C -0.160 4.160 21 C -0.188 4.188 22 H 0.276 0.724 23 H 0.118 0.882 24 H 0.086 0.914 25 H 0.384 0.616 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.522 -13.743 -2.528 14.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.500 4.500 8 H 0.091 0.909 9 C 0.072 3.928 10 C -0.142 4.142 11 C -0.186 4.186 12 C -0.004 4.004 13 N -0.397 5.397 14 C 0.024 3.976 15 C -0.121 4.121 16 C -0.134 4.134 17 C -0.184 4.184 18 C -0.190 4.190 19 C -0.131 4.131 20 C -0.183 4.183 21 C -0.209 4.209 22 H 0.086 0.914 23 H 0.135 0.865 24 H 0.104 0.896 25 H 0.216 0.784 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.580 -13.678 -2.400 14.341 hybrid contribution -0.056 0.716 -0.103 0.725 sum -3.637 -12.962 -2.503 13.693 Atomic orbital electron populations 1.69861 1.07349 1.28553 1.37831 1.25791 0.94649 1.00856 0.92736 0.86396 0.80577 0.81328 0.78886 1.19632 1.20591 1.18831 1.19380 0.97949 0.91393 1.41231 0.90942 1.17490 0.92457 0.92002 0.90901 1.20900 0.98186 0.96310 0.98797 1.20039 1.01598 0.91935 1.05013 1.17359 0.95983 0.85248 1.01826 1.43856 1.35486 1.02536 1.57814 1.20994 0.96265 0.82789 0.97576 1.22250 0.95146 0.94386 1.00364 1.21463 0.96486 0.94163 1.01253 1.23343 0.98504 0.95848 1.00666 1.23259 0.95194 0.98949 1.01570 1.21345 0.96700 0.93493 1.01569 1.19865 0.98082 0.97063 1.03248 1.20564 1.02779 0.92701 1.04813 0.91370 0.86469 0.89573 0.78357 0.93524 0.93466 0.90048 0.90194 0.91299 0.86193 0.86138 0.91157 0.90366 0.89508 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.73 11.01 55.54 0.61 -21.12 16 2 C 0.07 1.95 5.12 -17.34 -0.09 1.86 16 3 Si 0.90 19.45 29.60 -169.99 -5.03 14.42 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.47 -12.91 9.03 -37.87 -0.34 -13.25 16 8 H 0.07 1.93 7.91 -52.49 -0.41 1.52 16 9 C 0.07 2.04 5.57 -106.79 -0.59 1.45 16 10 C -0.12 -3.24 8.63 -39.26 -0.34 -3.58 16 11 C -0.16 -3.89 9.82 -39.77 -0.39 -4.28 16 12 C 0.09 2.06 6.67 -83.69 -0.56 1.50 16 13 N -0.76 -13.37 5.65 -58.50 -0.33 -13.70 16 14 C 0.15 2.19 4.20 -4.05 -0.02 2.18 16 15 C -0.10 -1.20 3.16 -88.91 -0.28 -1.48 16 16 C -0.10 -1.10 6.33 -26.83 -0.17 -1.27 16 17 C -0.17 -1.67 10.78 -35.70 -0.38 -2.06 16 18 C -0.17 -1.66 10.77 -35.70 -0.38 -2.05 16 19 C -0.09 -0.95 6.38 -26.83 -0.17 -1.13 16 20 C -0.16 -3.69 9.23 -39.77 -0.37 -4.05 16 21 C -0.19 -4.76 9.74 -39.26 -0.38 -5.14 16 22 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 23 H 0.12 3.22 6.21 -52.48 -0.33 2.89 16 24 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 25 H 0.38 6.11 8.47 -40.82 -0.35 5.77 16 26 H 0.05 0.70 7.93 -51.93 -0.41 0.29 16 27 H 0.05 0.73 7.71 -51.93 -0.40 0.33 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.08 1.00 7.74 -51.93 -0.40 0.60 16 30 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 31 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 32 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.79 7.89 -51.93 -0.41 0.39 16 35 H 0.09 1.78 6.68 -52.49 -0.35 1.43 16 36 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 298.49 15.07 4.50 4.50 Total: -1.00 -28.39 298.49 -9.88 -38.27 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -5.16 Total: 8.92 kcal Atomic # 6 Polarization: -26.83 SS G_CDS: -4.47 Total: -31.30 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.28 Total: -34.82 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.39 -9.88 -38.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692035001.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.898 kcal (2) G-P(sol) polarization free energy of solvation -28.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds