Wall clock time and date at job start Mon Mar 30 2020 05:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86800 * 119.99781 * 2 1 4 4 H 1.48500 * 109.47111 * 274.51370 * 3 2 1 5 5 H 1.48494 * 109.47184 * 34.51186 * 3 2 1 6 6 H 1.48495 * 109.47132 * 154.51109 * 3 2 1 7 7 C 1.39866 * 120.00516 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00048 * 197.99143 * 7 2 1 9 9 C 1.41139 * 119.99739 * 17.98538 * 7 2 1 10 10 C 1.40885 * 120.15566 * 25.21466 * 9 7 2 11 11 C 1.36343 * 119.83322 * 180.25308 * 10 9 7 12 12 C 1.39566 * 120.16156 * 359.49976 * 11 10 9 13 13 N 1.38859 * 119.84205 * 180.25274 * 12 11 10 14 14 C 1.46493 * 120.00032 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.47181 * 180.02562 * 14 13 12 16 16 C 1.54635 * 111.03819 * 287.02424 * 15 14 13 17 17 C 1.51099 * 104.72733 * 217.33124 * 16 15 14 18 18 C 1.30526 * 111.10165 * 16.44409 * 17 16 15 19 19 C 1.51095 * 111.10681 * 359.97438 * 18 17 16 20 20 C 1.39570 * 120.31649 * 0.23627 * 12 11 10 21 21 C 1.36343 * 120.15809 * 0.02562 * 20 12 11 22 22 H 0.97000 * 120.00294 * 359.97438 * 1 2 3 23 23 H 1.08003 * 120.08446 * 0.02562 * 10 9 7 24 24 H 1.08002 * 119.91789 * 179.77968 * 11 10 9 25 25 H 0.97003 * 119.99491 * 0.02562 * 13 12 11 26 26 H 1.09000 * 109.47429 * 300.00311 * 14 13 12 27 27 H 1.09005 * 109.47194 * 60.00282 * 14 13 12 28 28 H 1.08995 * 110.91416 * 51.03535 * 15 14 13 29 29 H 1.09001 * 110.38713 * 336.14896 * 16 15 14 30 30 H 1.09008 * 110.38601 * 98.52226 * 16 15 14 31 31 H 1.07995 * 124.44930 * 196.45561 * 17 16 15 32 32 H 1.08005 * 124.44364 * 180.02562 * 18 17 16 33 33 H 1.09001 * 110.39169 * 224.75812 * 19 18 17 34 34 H 1.09003 * 110.38635 * 102.37731 * 19 18 17 35 35 H 1.07994 * 119.91785 * 180.02562 * 20 12 11 36 36 H 1.08002 * 120.07744 * 180.02562 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.3951 2.1016 -1.3957 5 1 1.4914 2.6232 0.7932 6 1 3.5849 1.4146 0.6025 7 6 2.0085 -1.2112 -0.0005 8 1 3.0489 -1.2341 0.2883 9 6 1.3546 -2.4035 -0.3785 10 6 0.2343 -2.3565 -1.2315 11 6 -0.3956 -3.5119 -1.5883 12 6 0.0733 -4.7398 -1.1190 13 7 -0.5701 -5.9129 -1.4908 14 6 -0.0806 -7.2037 -1.0008 15 6 -0.9598 -8.3264 -1.5553 16 6 -2.3411 -8.3443 -0.8604 17 6 -2.6834 -9.8097 -0.7238 18 6 -1.6257 -10.5566 -0.8883 19 6 -0.4019 -9.7140 -1.1627 20 6 1.1859 -4.7945 -0.2782 21 6 1.8224 -3.6467 0.0911 22 1 -0.4850 0.8400 0.0004 23 1 -0.1270 -1.4073 -1.5989 24 1 -1.2567 -3.4771 -2.2392 25 1 -1.3432 -5.8776 -2.0756 26 1 0.9477 -7.3514 -1.3307 27 1 -0.1180 -7.2168 0.0885 28 1 -1.0661 -8.2393 -2.6365 29 1 -2.2782 -7.8758 0.1218 30 1 -3.0831 -7.8370 -1.4772 31 1 -3.6731 -10.1892 -0.5173 32 1 -1.6255 -11.6354 -0.8360 33 1 0.1747 -10.1382 -1.9847 34 1 0.2138 -9.6356 -0.2666 35 1 1.5435 -5.7482 0.0808 36 1 2.6835 -3.6905 0.7415 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692035001.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:01 Heat of formation + Delta-G solvation = 16.388896 kcal Electronic energy + Delta-G solvation = -16353.443400 eV Core-core repulsion = 13801.211597 eV Total energy + Delta-G solvation = -2552.231803 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.17283 -39.32464 -36.53967 -34.72400 -31.91539 -31.14146 -29.75550 -29.01519 -26.56638 -25.15817 -22.80674 -21.98911 -20.95064 -19.61732 -19.10072 -17.67164 -17.18057 -16.90600 -16.43998 -15.73792 -15.38603 -14.72839 -14.55722 -14.20010 -13.80692 -13.64367 -13.56203 -13.25112 -12.98465 -12.78645 -12.65594 -12.47785 -12.14350 -12.01200 -11.98921 -11.82820 -11.50017 -11.17762 -11.04626 -10.28613 -9.75950 -9.40080 -8.55056 -8.15190 -6.00621 1.10280 1.19010 1.40349 1.40671 1.53738 1.59328 2.28076 2.83911 2.89969 3.70528 3.73989 3.85606 3.96763 4.39570 4.41619 4.46130 4.49542 4.61336 4.74901 4.87318 4.88611 4.94678 5.01181 5.09290 5.13133 5.19010 5.32053 5.37944 5.43492 5.65417 5.74440 5.77169 5.92975 6.04529 6.18950 6.41552 6.68106 6.88484 7.08867 7.14513 7.31572 8.48997 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.068038 B = 0.003966 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.438081 B = 7057.837287 C = 7277.256239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.032 3.968 3 Si 0.978 3.022 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.261 1.261 7 C -0.507 4.507 8 H 0.067 0.933 9 C 0.036 3.964 10 C -0.141 4.141 11 C -0.175 4.175 12 C 0.112 3.888 13 N -0.751 5.751 14 C 0.148 3.852 15 C -0.097 4.097 16 C -0.099 4.099 17 C -0.176 4.176 18 C -0.168 4.168 19 C -0.094 4.094 20 C -0.168 4.168 21 C -0.198 4.198 22 H 0.282 0.718 23 H 0.099 0.901 24 H 0.107 0.893 25 H 0.395 0.605 26 H 0.048 0.952 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.135 0.865 32 H 0.141 0.859 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.113 0.887 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.763 -15.382 -2.947 16.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.180 4.180 3 Si 0.799 3.201 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.185 1.185 7 C -0.539 4.539 8 H 0.085 0.915 9 C 0.033 3.967 10 C -0.161 4.161 11 C -0.197 4.197 12 C 0.013 3.987 13 N -0.386 5.386 14 C 0.023 3.977 15 C -0.115 4.115 16 C -0.136 4.136 17 C -0.194 4.194 18 C -0.186 4.186 19 C -0.132 4.132 20 C -0.190 4.190 21 C -0.218 4.218 22 H 0.093 0.907 23 H 0.117 0.883 24 H 0.126 0.874 25 H 0.229 0.771 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.153 0.847 32 H 0.159 0.841 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.131 0.869 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.841 -15.368 -2.828 16.091 hybrid contribution -0.040 1.021 0.007 1.022 sum -3.880 -14.347 -2.821 15.127 Atomic orbital electron populations 1.69920 1.08752 1.29792 1.38573 1.26617 0.95464 1.04101 0.91817 0.85266 0.79089 0.76579 0.79137 1.18948 1.19529 1.18486 1.19603 0.98034 0.92809 1.43430 0.91463 1.17813 0.93645 0.93001 0.92271 1.20844 0.98881 0.96651 0.99688 1.20243 1.02190 0.91801 1.05485 1.17467 0.95104 0.86340 0.99834 1.43935 1.35194 1.02246 1.57223 1.21145 0.97022 0.82185 0.97346 1.22169 0.94845 0.94074 1.00457 1.21452 0.96387 0.95328 1.00424 1.23436 0.99562 0.94939 1.01472 1.23456 0.94528 0.99966 1.00645 1.21373 0.97180 0.92542 1.02096 1.20116 0.98167 0.97460 1.03279 1.20766 1.03159 0.92968 1.04912 0.90750 0.88295 0.87447 0.77133 0.93365 0.93983 0.89520 0.91689 0.91114 0.84734 0.84104 0.89880 0.90328 0.86858 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.53 11.01 21.82 0.24 -46.29 16 2 C 0.03 1.70 5.12 85.23 0.44 2.14 16 3 Si 0.98 40.58 29.60 68.60 2.03 42.61 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 6 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 7 C -0.51 -28.98 9.03 23.38 0.21 -28.77 16 8 H 0.07 3.73 7.91 -2.91 -0.02 3.71 16 9 C 0.04 2.02 5.57 -21.27 -0.12 1.90 16 10 C -0.14 -7.69 8.63 22.48 0.19 -7.49 16 11 C -0.18 -8.29 9.82 22.15 0.22 -8.07 16 12 C 0.11 4.84 6.67 38.67 0.26 5.10 16 13 N -0.75 -24.82 5.65 -339.00 -1.91 -26.74 16 14 C 0.15 4.00 4.20 86.38 0.36 4.36 16 15 C -0.10 -2.01 3.16 -9.68 -0.03 -2.04 16 16 C -0.10 -2.04 6.33 30.53 0.19 -1.85 16 17 C -0.18 -3.10 10.78 26.26 0.28 -2.81 16 18 C -0.17 -2.73 10.77 26.26 0.28 -2.45 16 19 C -0.09 -1.65 6.38 30.53 0.19 -1.46 16 20 C -0.17 -7.58 9.23 22.15 0.20 -7.37 16 21 C -0.20 -10.15 9.74 22.48 0.22 -9.93 16 22 H 0.28 14.16 8.30 -92.71 -0.77 13.39 16 23 H 0.10 5.68 6.21 -2.91 -0.02 5.66 16 24 H 0.11 4.51 8.06 -2.91 -0.02 4.48 16 25 H 0.39 11.63 8.47 -92.71 -0.79 10.84 16 26 H 0.05 1.33 7.93 -2.39 -0.02 1.31 16 27 H 0.04 1.21 7.71 -2.38 -0.02 1.20 16 28 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.06 1.53 7.74 -2.39 -0.02 1.51 16 30 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 32 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 1.39 7.89 -2.39 -0.02 1.37 16 35 H 0.11 4.44 6.68 -2.91 -0.02 4.42 16 36 H 0.09 4.63 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -61.97 298.49 3.54 -58.43 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: 0.28 Total: 30.74 kcal Atomic # 6 Polarization: -61.66 SS G_CDS: 2.91 Total: -58.75 kcal Atomic # 7 Polarization: -71.35 SS G_CDS: -1.67 Total: -73.02 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -61.97 3.54 -58.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692035001.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.817 kcal (2) G-P(sol) polarization free energy of solvation -61.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds