Wall clock time and date at job start Mon Mar 30 2020 06:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36661 * 120.11602 * 2 1 4 4 C 1.38789 * 120.52600 * 179.97438 * 3 2 1 5 5 C 1.37797 * 120.66678 * 0.02562 * 4 3 2 6 6 C 1.39086 * 119.77820 * 359.97438 * 5 4 3 7 7 C 1.39584 * 120.11649 * 179.72253 * 2 1 3 8 8 C 1.46494 * 134.03570 * 0.66273 * 7 2 1 9 9 C 1.34233 * 107.00439 * 179.53079 * 8 7 2 10 10 N 1.36842 * 109.93542 * 359.77989 * 9 8 7 11 11 C 1.46498 * 125.05754 * 180.02562 * 10 9 8 12 12 H 1.09007 * 109.46891 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47259 * 59.98248 * 11 10 9 14 14 C 1.52998 * 109.47505 * 299.97231 * 11 10 9 15 15 C 1.50696 * 109.47319 * 184.99970 * 14 11 10 16 16 H 1.08000 * 119.99674 * 0.02562 * 15 14 11 17 17 C 1.37879 * 120.00031 * 180.02562 * 15 14 11 18 18 N 1.31512 * 119.99942 * 180.02562 * 17 15 14 19 19 Si 1.86793 * 119.99832 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.46872 * 90.00188 * 19 17 15 21 21 H 1.48501 * 109.47170 * 209.99947 * 19 17 15 22 22 H 1.48498 * 109.47605 * 330.00185 * 19 17 15 23 23 H 1.09002 * 109.47152 * 89.99961 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.00061 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.00042 * 1 2 3 26 26 H 1.07998 * 119.74114 * 359.97438 * 3 2 1 27 27 H 1.07997 * 119.66700 * 180.02562 * 4 3 2 28 28 H 1.07999 * 120.10835 * 179.97438 * 5 4 3 29 29 H 1.08002 * 126.49656 * 359.30959 * 8 7 2 30 30 H 1.07996 * 125.03076 * 179.80416 * 9 8 7 31 31 H 1.09007 * 109.46515 * 299.99429 * 13 11 10 32 32 H 1.08999 * 109.47420 * 59.99076 * 13 11 10 33 33 H 1.09005 * 109.47002 * 179.97438 * 13 11 10 34 34 H 1.08997 * 109.47170 * 305.00833 * 14 11 10 35 35 H 1.09000 * 109.46463 * 65.00395 * 14 11 10 36 36 H 0.96996 * 119.99983 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1927 1.1821 0.0000 4 6 3.5806 1.1921 0.0005 5 6 4.2919 0.0119 0.0005 6 6 3.6145 -1.2029 0.0006 7 6 2.2074 -1.2074 0.0058 8 6 1.8074 -2.6167 0.0005 9 6 2.9351 -3.3448 0.0006 10 7 4.0249 -2.5172 0.0006 11 6 5.4203 -2.9633 0.0001 12 1 6.0793 -2.0950 -0.0002 13 6 5.6861 -3.8055 -1.2492 14 6 5.6870 -3.8054 1.2493 15 6 7.1500 -4.1614 1.3123 16 1 7.8223 -3.8207 0.5388 17 6 7.6301 -4.9221 2.3572 18 7 8.9069 -5.2323 2.4124 19 14 6.4669 -5.5119 3.6945 20 1 5.9071 -6.8342 3.3157 21 1 7.2078 -5.6366 4.9754 22 1 5.3611 -4.5340 3.8556 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5139 26 1 1.6504 2.1161 -0.0004 27 1 4.1084 2.1343 0.0009 28 1 5.3717 0.0301 0.0005 29 1 0.7968 -2.9976 0.0005 30 1 2.9762 -4.4240 0.0002 31 1 5.0271 -4.6738 -1.2489 32 1 5.4960 -3.2055 -2.1391 33 1 6.7245 -4.1370 -1.2497 34 1 5.4132 -3.2353 2.1371 35 1 5.0926 -4.7180 1.2059 36 1 9.2447 -5.7671 3.1477 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695814986.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:28 Heat of formation + Delta-G solvation = 42.302062 kcal Electronic energy + Delta-G solvation = -17003.137015 eV Core-core repulsion = 14452.028891 eV Total energy + Delta-G solvation = -2551.108124 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.02056 -37.32806 -34.72619 -32.80264 -32.16169 -29.10911 -28.75077 -27.54832 -26.32905 -23.63882 -21.79986 -21.37365 -20.96498 -18.26339 -17.27573 -16.23059 -15.93501 -15.13815 -14.68084 -14.29924 -13.95330 -13.73539 -13.30307 -13.06483 -12.75327 -12.58533 -12.29205 -12.10846 -12.04757 -11.68484 -11.28181 -11.26144 -11.03524 -10.93726 -10.55494 -10.23888 -10.06425 -9.95131 -9.39889 -9.09718 -8.68341 -7.81357 -7.19609 -6.18920 -4.19523 1.42012 1.96633 3.11410 3.21471 3.30360 3.33712 3.34994 4.17293 4.33013 4.93126 5.13071 5.13500 5.19858 5.25030 5.46131 5.49783 5.63480 5.70837 5.71590 5.85029 5.88609 5.91076 6.01398 6.12090 6.24850 6.32271 6.41837 6.46180 6.69031 6.76984 6.90488 6.92997 7.05918 7.12633 7.22494 7.52203 7.68315 7.83799 8.33090 8.81979 9.41894 10.93446 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.031071 B = 0.005974 C = 0.005785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.933899 B = 4685.959350 C = 4838.674462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.046 4.046 3 C -0.158 4.158 4 C -0.106 4.106 5 C -0.128 4.128 6 C 0.101 3.899 7 C -0.110 4.110 8 C -0.225 4.225 9 C 0.068 3.932 10 N -0.467 5.467 11 C 0.141 3.859 12 H 0.090 0.910 13 C -0.148 4.148 14 C -0.016 4.016 15 C -0.524 4.524 16 H 0.077 0.923 17 C 0.074 3.926 18 N -0.896 5.896 19 Si 0.876 3.124 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.266 1.266 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.115 0.885 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.139 0.861 30 H 0.162 0.838 31 H 0.054 0.946 32 H 0.043 0.957 33 H 0.087 0.913 34 H 0.022 0.978 35 H 0.018 0.982 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.716 8.149 -5.519 16.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.046 4.046 3 C -0.177 4.177 4 C -0.125 4.125 5 C -0.148 4.148 6 C -0.006 4.006 7 C -0.115 4.115 8 C -0.250 4.250 9 C -0.060 4.060 10 N -0.147 5.147 11 C 0.040 3.960 12 H 0.108 0.892 13 C -0.206 4.206 14 C -0.054 4.054 15 C -0.562 4.562 16 H 0.095 0.905 17 C -0.129 4.129 18 N -0.534 5.534 19 Si 0.703 3.297 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.190 1.190 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.133 0.867 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.157 0.843 30 H 0.180 0.820 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.106 0.894 34 H 0.041 0.959 35 H 0.036 0.964 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.220 7.899 -5.413 16.324 hybrid contribution -0.334 -0.498 0.849 1.040 sum -13.555 7.401 -4.564 16.104 Atomic orbital electron populations 1.20694 0.91789 1.02221 1.01768 1.18976 0.95181 0.91326 0.99158 1.20380 0.94060 0.96834 1.06416 1.20667 0.93932 0.96717 1.01221 1.20076 0.99326 0.89739 1.05694 1.18318 0.93420 0.85359 1.03550 1.19029 0.91898 0.93200 1.07375 1.21475 0.97501 0.90757 1.15276 1.21760 0.85539 0.96599 1.02090 1.44701 1.07088 1.03391 1.59550 1.21588 0.77129 0.98953 0.98317 0.89155 1.22060 1.04068 0.99154 0.95297 1.19926 0.98614 0.94697 0.92183 1.20896 0.91201 1.33741 1.10331 0.90483 1.24942 0.94937 0.95384 0.97634 1.69885 1.13147 1.38105 1.32289 0.86829 0.81487 0.79647 0.81721 1.20108 1.21119 1.19020 0.91629 0.92047 0.91731 0.86743 0.86279 0.86418 0.84309 0.82047 0.92709 0.93822 0.89421 0.95926 0.96355 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 9.95 36.01 0.36 -0.84 16 2 C -0.05 -0.67 5.87 -104.69 -0.61 -1.28 16 3 C -0.16 -2.15 9.62 -39.95 -0.38 -2.53 16 4 C -0.11 -1.50 10.01 -39.54 -0.40 -1.89 16 5 C -0.13 -2.10 9.81 -39.43 -0.39 -2.48 16 6 C 0.10 1.83 6.81 -83.99 -0.57 1.26 16 7 C -0.11 -1.85 6.14 -105.14 -0.65 -2.50 16 8 C -0.23 -3.52 10.78 -37.67 -0.41 -3.93 16 9 C 0.07 1.12 10.24 -16.73 -0.17 0.95 16 10 N -0.47 -8.58 2.65 -107.35 -0.28 -8.87 16 11 C 0.14 2.74 2.95 -67.93 -0.20 2.54 16 12 H 0.09 1.78 7.34 -51.93 -0.38 1.40 16 13 C -0.15 -2.60 9.04 37.16 0.34 -2.27 16 14 C -0.02 -0.37 3.50 -27.89 -0.10 -0.47 16 15 C -0.52 -14.05 8.96 -34.44 -0.31 -14.36 16 16 H 0.08 2.18 7.30 -52.49 -0.38 1.80 16 17 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 18 N -0.90 -26.64 13.96 55.43 0.77 -25.87 16 19 Si 0.88 21.26 27.47 -169.99 -4.67 16.59 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 23 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 25 H 0.06 0.70 7.90 -51.93 -0.41 0.29 16 26 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 27 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 28 H 0.12 1.83 7.56 -52.49 -0.40 1.43 16 29 H 0.14 1.79 8.06 -52.49 -0.42 1.36 16 30 H 0.16 2.34 8.06 -52.49 -0.42 1.92 16 31 H 0.05 0.91 7.89 -51.93 -0.41 0.50 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.65 6.95 -51.93 -0.36 1.29 16 34 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 35 H 0.02 0.41 7.46 -51.93 -0.39 0.03 16 36 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 298.52 15.07 4.50 4.50 Total: -1.00 -29.90 298.52 -8.50 -38.40 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -5.23 Total: 1.09 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: -3.59 Total: -25.84 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.49 Total: -34.73 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.90 -8.50 -38.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695814986.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.698 kcal (2) G-P(sol) polarization free energy of solvation -29.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds