Wall clock time and date at job start Mon Mar 30 2020 06:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36661 * 120.11602 * 2 1 4 4 C 1.38789 * 120.52600 * 179.97438 * 3 2 1 5 5 C 1.37797 * 120.66678 * 0.02562 * 4 3 2 6 6 C 1.39086 * 119.77820 * 359.97438 * 5 4 3 7 7 C 1.39584 * 120.11649 * 179.72253 * 2 1 3 8 8 C 1.46494 * 134.03570 * 0.66273 * 7 2 1 9 9 C 1.34233 * 107.00439 * 179.53079 * 8 7 2 10 10 N 1.36842 * 109.93542 * 359.77989 * 9 8 7 11 11 C 1.46498 * 125.05754 * 180.02562 * 10 9 8 12 12 H 1.09007 * 109.46891 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47259 * 59.98248 * 11 10 9 14 14 C 1.52998 * 109.47505 * 299.97231 * 11 10 9 15 15 C 1.50696 * 109.47319 * 184.99970 * 14 11 10 16 16 H 1.08000 * 119.99674 * 0.02562 * 15 14 11 17 17 C 1.37879 * 120.00031 * 180.02562 * 15 14 11 18 18 N 1.31512 * 119.99942 * 180.02562 * 17 15 14 19 19 Si 1.86793 * 119.99832 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.46872 * 90.00188 * 19 17 15 21 21 H 1.48501 * 109.47170 * 209.99947 * 19 17 15 22 22 H 1.48498 * 109.47605 * 330.00185 * 19 17 15 23 23 H 1.09002 * 109.47152 * 89.99961 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.00061 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.00042 * 1 2 3 26 26 H 1.07998 * 119.74114 * 359.97438 * 3 2 1 27 27 H 1.07997 * 119.66700 * 180.02562 * 4 3 2 28 28 H 1.07999 * 120.10835 * 179.97438 * 5 4 3 29 29 H 1.08002 * 126.49656 * 359.30959 * 8 7 2 30 30 H 1.07996 * 125.03076 * 179.80416 * 9 8 7 31 31 H 1.09007 * 109.46515 * 299.99429 * 13 11 10 32 32 H 1.08999 * 109.47420 * 59.99076 * 13 11 10 33 33 H 1.09005 * 109.47002 * 179.97438 * 13 11 10 34 34 H 1.08997 * 109.47170 * 305.00833 * 14 11 10 35 35 H 1.09000 * 109.46463 * 65.00395 * 14 11 10 36 36 H 0.96996 * 119.99983 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1927 1.1821 0.0000 4 6 3.5806 1.1921 0.0005 5 6 4.2919 0.0119 0.0005 6 6 3.6145 -1.2029 0.0006 7 6 2.2074 -1.2074 0.0058 8 6 1.8074 -2.6167 0.0005 9 6 2.9351 -3.3448 0.0006 10 7 4.0249 -2.5172 0.0006 11 6 5.4203 -2.9633 0.0001 12 1 6.0793 -2.0950 -0.0002 13 6 5.6861 -3.8055 -1.2492 14 6 5.6870 -3.8054 1.2493 15 6 7.1500 -4.1614 1.3123 16 1 7.8223 -3.8207 0.5388 17 6 7.6301 -4.9221 2.3572 18 7 8.9069 -5.2323 2.4124 19 14 6.4669 -5.5119 3.6945 20 1 5.9071 -6.8342 3.3157 21 1 7.2078 -5.6366 4.9754 22 1 5.3611 -4.5340 3.8556 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5139 26 1 1.6504 2.1161 -0.0004 27 1 4.1084 2.1343 0.0009 28 1 5.3717 0.0301 0.0005 29 1 0.7968 -2.9976 0.0005 30 1 2.9762 -4.4240 0.0002 31 1 5.0271 -4.6738 -1.2489 32 1 5.4960 -3.2055 -2.1391 33 1 6.7245 -4.1370 -1.2497 34 1 5.4132 -3.2353 2.1371 35 1 5.0926 -4.7180 1.2059 36 1 9.2447 -5.7671 3.1477 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695814986.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:28 Heat of formation + Delta-G solvation = 27.662275 kcal Electronic energy + Delta-G solvation = -17003.771844 eV Core-core repulsion = 14452.028891 eV Total energy + Delta-G solvation = -2551.742953 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.25740 -38.56019 -36.31653 -34.42586 -33.62514 -30.60268 -29.95956 -29.15304 -27.34111 -25.41576 -22.98897 -22.73014 -22.37877 -19.59980 -19.19363 -17.64377 -17.23519 -16.47605 -16.23245 -15.76755 -15.36276 -15.21946 -14.73031 -14.23476 -14.21843 -13.91694 -13.65313 -13.42528 -13.19049 -13.05094 -12.95715 -12.79080 -12.37823 -12.18983 -11.93556 -11.92274 -11.72058 -11.58175 -11.43851 -10.83280 -10.31175 -9.03306 -8.40921 -8.34909 -6.40062 0.26389 0.79366 1.29353 1.32986 1.43049 1.88980 2.01069 2.29226 2.99388 3.01542 3.73741 3.84391 4.01329 4.14991 4.16738 4.26098 4.33578 4.46738 4.54914 4.72733 4.78549 4.82514 4.91445 4.92965 4.98304 5.07390 5.12089 5.13863 5.20557 5.30652 5.36735 5.50354 5.64315 5.79136 5.96807 6.06583 6.15986 6.45012 6.50200 6.66419 7.24503 8.80156 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.031071 B = 0.005974 C = 0.005785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.933899 B = 4685.959350 C = 4838.674462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.051 4.051 3 C -0.160 4.160 4 C -0.099 4.099 5 C -0.159 4.159 6 C 0.071 3.929 7 C -0.133 4.133 8 C -0.215 4.215 9 C 0.044 3.956 10 N -0.479 5.479 11 C 0.150 3.850 12 H 0.077 0.923 13 C -0.138 4.138 14 C -0.007 4.007 15 C -0.524 4.524 16 H 0.048 0.952 17 C 0.017 3.983 18 N -0.941 5.941 19 Si 0.940 3.060 20 H -0.261 1.261 21 H -0.283 1.283 22 H -0.261 1.261 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.066 0.934 26 H 0.147 0.853 27 H 0.146 0.854 28 H 0.112 0.888 29 H 0.167 0.833 30 H 0.178 0.822 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.007 0.993 35 H 0.027 0.973 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.721 8.994 -5.452 19.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.051 4.051 3 C -0.179 4.179 4 C -0.118 4.118 5 C -0.179 4.179 6 C -0.035 4.035 7 C -0.138 4.138 8 C -0.240 4.240 9 C -0.082 4.082 10 N -0.161 5.161 11 C 0.048 3.952 12 H 0.096 0.904 13 C -0.196 4.196 14 C -0.045 4.045 15 C -0.562 4.562 16 H 0.066 0.934 17 C -0.181 4.181 18 N -0.582 5.582 19 Si 0.764 3.236 20 H -0.186 1.186 21 H -0.209 1.209 22 H -0.185 1.185 23 H 0.097 0.903 24 H 0.099 0.901 25 H 0.085 0.915 26 H 0.165 0.835 27 H 0.164 0.836 28 H 0.130 0.870 29 H 0.184 0.816 30 H 0.195 0.805 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.026 0.974 35 H 0.046 0.954 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.255 8.751 -5.360 19.223 hybrid contribution 0.583 -0.614 0.769 1.144 sum -15.671 8.138 -4.591 18.245 Atomic orbital electron populations 1.20751 0.89189 1.03344 1.02927 1.19462 0.97186 0.90751 0.97732 1.20815 0.93939 0.98017 1.05158 1.21063 0.94626 0.96941 0.99143 1.20282 0.99447 0.90444 1.07771 1.18742 0.94608 0.85509 1.04686 1.19427 0.91573 0.94587 1.08196 1.21839 0.98423 0.90237 1.13498 1.22157 0.85393 0.97427 1.03195 1.44563 1.06486 1.04021 1.61019 1.21224 0.78446 0.98105 0.97382 0.90433 1.21940 1.03022 0.99507 0.95132 1.19761 0.95975 0.95343 0.93404 1.21155 0.92936 1.32836 1.09276 0.93393 1.25790 0.96404 0.95806 1.00143 1.70018 1.15130 1.39534 1.33472 0.85813 0.79402 0.79660 0.78727 1.18579 1.20852 1.18490 0.90295 0.90079 0.91524 0.83496 0.83613 0.87008 0.81558 0.80521 0.91579 0.92189 0.91317 0.97431 0.95436 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.95 9.95 71.24 0.71 -1.24 16 2 C -0.05 -1.34 5.87 -19.91 -0.12 -1.45 16 3 C -0.16 -3.88 9.62 22.03 0.21 -3.67 16 4 C -0.10 -2.60 10.01 22.30 0.22 -2.38 16 5 C -0.16 -5.20 9.81 22.37 0.22 -4.98 16 6 C 0.07 2.55 6.81 39.03 0.27 2.82 16 7 C -0.13 -4.26 6.14 -20.20 -0.12 -4.38 16 8 C -0.22 -6.30 10.78 23.51 0.25 -6.04 16 9 C 0.04 1.41 10.24 83.00 0.85 2.26 16 10 N -0.48 -17.51 2.65 -493.54 -1.31 -18.82 16 11 C 0.15 5.95 2.95 44.99 0.13 6.08 16 12 H 0.08 3.21 7.34 -2.38 -0.02 3.19 16 13 C -0.14 -4.89 9.04 71.98 0.65 -4.24 16 14 C -0.01 -0.31 3.50 29.85 0.10 -0.21 16 15 C -0.52 -28.89 8.96 25.60 0.23 -28.66 16 16 H 0.05 2.85 7.30 -2.91 -0.02 2.83 16 17 C 0.02 0.96 5.47 84.66 0.46 1.42 16 18 N -0.94 -57.35 13.96 21.45 0.30 -57.05 16 19 Si 0.94 43.90 27.47 68.60 1.88 45.78 16 20 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 21 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 22 H -0.26 -11.86 6.54 99.48 0.65 -11.21 16 23 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.08 1.18 8.08 -2.39 -0.02 1.16 16 25 H 0.07 1.21 7.90 -2.38 -0.02 1.19 16 26 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 27 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 28 H 0.11 3.62 7.56 -2.91 -0.02 3.60 16 29 H 0.17 3.76 8.06 -2.91 -0.02 3.73 16 30 H 0.18 4.84 8.06 -2.91 -0.02 4.82 16 31 H 0.07 2.15 7.89 -2.38 -0.02 2.13 16 32 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.07 2.67 6.95 -2.38 -0.02 2.65 16 34 H 0.01 0.36 7.20 -2.39 -0.02 0.35 16 35 H 0.03 1.22 7.46 -2.39 -0.02 1.20 16 36 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -65.09 298.52 5.94 -59.16 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.99 Total: 15.60 kcal Atomic # 6 Polarization: -48.74 SS G_CDS: 4.07 Total: -44.67 kcal Atomic # 7 Polarization: -74.86 SS G_CDS: -1.01 Total: -75.87 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.88 Total: 45.78 kcal Total: -65.09 5.94 -59.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695814986.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.818 kcal (2) G-P(sol) polarization free energy of solvation -65.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds