Wall clock time and date at job start Mon Mar 30 2020 06:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36662 * 120.11724 * 2 1 4 4 C 1.38794 * 120.52732 * 179.97438 * 3 2 1 5 5 C 1.37782 * 120.66606 * 359.97438 * 4 3 2 6 6 C 1.39090 * 119.78010 * 359.76186 * 5 4 3 7 7 C 1.39592 * 120.11889 * 179.97438 * 2 1 3 8 8 C 1.46490 * 134.03673 * 359.97438 * 7 2 1 9 9 C 1.34231 * 107.00148 * 180.02562 * 8 7 2 10 10 N 1.36839 * 109.93626 * 0.02562 * 9 8 7 11 11 C 1.46500 * 125.06184 * 179.97438 * 10 9 8 12 12 H 1.09007 * 109.46734 * 180.02562 * 11 10 9 13 13 C 1.52992 * 109.47480 * 300.02529 * 11 10 9 14 14 C 1.53004 * 109.47204 * 60.02947 * 11 10 9 15 15 C 1.50701 * 109.47211 * 175.00128 * 14 11 10 16 16 H 1.08002 * 119.99761 * 359.97438 * 15 14 11 17 17 C 1.37871 * 119.99694 * 180.27574 * 15 14 11 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 14 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 14 20 20 H 1.48494 * 109.47230 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47301 * 119.99669 * 19 17 15 22 22 H 1.48498 * 109.47430 * 239.99516 * 19 17 15 23 23 H 1.08995 * 109.47109 * 270.02469 * 1 2 3 24 24 H 1.09006 * 109.46901 * 30.02244 * 1 2 3 25 25 H 1.08994 * 109.46840 * 150.02056 * 1 2 3 26 26 H 1.07999 * 119.73767 * 359.97438 * 3 2 1 27 27 H 1.08000 * 119.66260 * 180.02562 * 4 3 2 28 28 H 1.07997 * 120.11028 * 180.02562 * 5 4 3 29 29 H 1.08004 * 126.50020 * 0.02562 * 8 7 2 30 30 H 1.08001 * 125.03925 * 180.02562 * 9 8 7 31 31 H 1.09000 * 109.46966 * 60.00115 * 13 11 10 32 32 H 1.09003 * 109.47367 * 180.02562 * 13 11 10 33 33 H 1.09004 * 109.47261 * 300.00139 * 13 11 10 34 34 H 1.09000 * 109.47211 * 54.99154 * 14 11 10 35 35 H 1.09007 * 109.46376 * 294.99697 * 14 11 10 36 36 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1927 1.1821 0.0000 4 6 3.5806 1.1921 0.0005 5 6 4.2918 0.0120 0.0016 6 6 3.6145 -1.2028 0.0072 7 6 2.2075 -1.2075 0.0005 8 6 1.8075 -2.6167 0.0016 9 6 2.9352 -3.3447 0.0023 10 7 4.0249 -2.5171 0.0022 11 6 5.4204 -2.9630 0.0034 12 1 6.0793 -2.0946 0.0035 13 6 5.6859 -3.8048 1.2530 14 6 5.6876 -3.8056 -1.2455 15 6 7.1507 -4.1615 -1.3078 16 1 7.8228 -3.8204 -0.5343 17 6 7.6322 -4.9173 -2.3555 18 7 6.8138 -5.3324 -3.2976 19 14 9.4472 -5.3518 -2.4369 20 1 10.1489 -4.7683 -1.2655 21 1 9.6037 -6.8285 -2.4232 22 1 10.0319 -4.8038 -3.6871 23 1 -0.3633 0.0004 1.0276 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3633 -0.8901 -0.5135 26 1 1.6504 2.1160 -0.0004 27 1 4.1084 2.1343 0.0009 28 1 5.3717 0.0302 0.0024 29 1 0.7969 -2.9977 0.0019 30 1 2.9766 -4.4240 0.0027 31 1 5.0271 -4.6731 1.2528 32 1 6.7244 -4.1361 1.2540 33 1 5.4956 -3.2044 2.1427 34 1 5.4140 -3.2359 -2.1336 35 1 5.0932 -4.7183 -1.2018 36 1 7.1527 -5.8637 -4.0349 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695814990.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:31 Heat of formation + Delta-G solvation = 38.524432 kcal Electronic energy + Delta-G solvation = -16938.935409 eV Core-core repulsion = 14387.663475 eV Total energy + Delta-G solvation = -2551.271934 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.91486 -37.22658 -34.61951 -32.76427 -32.10395 -28.88664 -28.59475 -27.09169 -26.25461 -23.83005 -21.70425 -21.40040 -21.02451 -18.19933 -16.86237 -16.14445 -15.75838 -15.05993 -14.74868 -14.27461 -13.96749 -13.54225 -13.22541 -12.95567 -12.63548 -12.30292 -12.21247 -12.06722 -11.88268 -11.58945 -11.16724 -11.06223 -10.95763 -10.90625 -10.54813 -10.45089 -10.16453 -9.70159 -9.32849 -8.98789 -8.51358 -7.71487 -7.09563 -6.14999 -4.19744 1.50421 2.04946 3.22237 3.22805 3.30276 3.33015 3.46338 4.25252 4.34601 5.01487 5.20924 5.21170 5.29824 5.33633 5.54133 5.58550 5.71485 5.77691 5.81526 5.93069 5.96099 5.99506 6.11510 6.19873 6.34352 6.41848 6.50625 6.62794 6.70058 6.84310 6.98209 7.19195 7.28896 7.42581 7.48804 7.75104 7.80052 7.93842 8.19544 8.85314 9.45310 10.96167 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.036208 B = 0.005398 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.122420 B = 5185.983089 C = 5395.261151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.046 4.046 3 C -0.159 4.159 4 C -0.108 4.108 5 C -0.128 4.128 6 C 0.100 3.900 7 C -0.109 4.109 8 C -0.228 4.228 9 C 0.074 3.926 10 N -0.464 5.464 11 C 0.131 3.869 12 H 0.084 0.916 13 C -0.147 4.147 14 C 0.020 3.980 15 C -0.523 4.523 16 H 0.060 0.940 17 C 0.061 3.939 18 N -0.890 5.890 19 Si 0.895 3.105 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.114 0.886 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.139 0.861 30 H 0.163 0.837 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.040 0.960 34 H 0.022 0.978 35 H 0.024 0.976 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.601 8.106 7.475 13.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.047 4.047 3 C -0.178 4.178 4 C -0.127 4.127 5 C -0.148 4.148 6 C -0.008 4.008 7 C -0.114 4.114 8 C -0.253 4.253 9 C -0.054 4.054 10 N -0.143 5.143 11 C 0.030 3.970 12 H 0.102 0.898 13 C -0.205 4.205 14 C -0.017 4.017 15 C -0.562 4.562 16 H 0.078 0.922 17 C -0.141 4.141 18 N -0.528 5.528 19 Si 0.722 3.278 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.132 0.868 27 H 0.136 0.864 28 H 0.134 0.866 29 H 0.156 0.844 30 H 0.180 0.820 31 H 0.074 0.926 32 H 0.101 0.899 33 H 0.059 0.941 34 H 0.041 0.959 35 H 0.042 0.958 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.253 7.851 7.312 13.536 hybrid contribution 1.103 -0.392 -0.269 1.201 sum -7.150 7.459 7.043 12.504 Atomic orbital electron populations 1.20688 0.91833 1.02218 1.01701 1.18973 0.95154 0.91346 0.99196 1.20360 0.94042 0.96795 1.06623 1.20639 0.93939 0.96644 1.01495 1.20044 0.99193 0.89789 1.05788 1.18321 0.93432 0.85427 1.03571 1.19028 0.91905 0.93204 1.07297 1.21458 0.97505 0.90713 1.15638 1.21766 0.85465 0.96634 1.01559 1.44689 1.07148 1.03287 1.59212 1.21831 0.77057 0.98921 0.99173 0.89778 1.22047 1.03645 0.99307 0.95458 1.19447 0.97564 0.94412 0.90325 1.21070 0.92938 1.33536 1.08662 0.92170 1.24997 0.97978 0.95724 0.95432 1.69973 1.34811 1.36265 1.11765 0.86491 0.84931 0.78216 0.78123 1.19614 1.20873 1.20892 0.91690 0.92097 0.91697 0.86826 0.86402 0.86591 0.84361 0.82016 0.92643 0.89926 0.94090 0.95921 0.95809 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 9.95 36.01 0.36 -0.90 16 2 C -0.05 -0.70 5.87 -104.69 -0.61 -1.32 16 3 C -0.16 -2.27 9.62 -39.95 -0.38 -2.65 16 4 C -0.11 -1.59 10.01 -39.54 -0.40 -1.98 16 5 C -0.13 -2.18 9.81 -39.43 -0.39 -2.56 16 6 C 0.10 1.90 6.81 -83.99 -0.57 1.32 16 7 C -0.11 -1.93 6.14 -105.14 -0.65 -2.57 16 8 C -0.23 -3.79 10.78 -37.67 -0.41 -4.20 16 9 C 0.07 1.31 10.24 -16.73 -0.17 1.13 16 10 N -0.46 -8.96 2.65 -107.35 -0.28 -9.24 16 11 C 0.13 2.65 2.95 -67.93 -0.20 2.45 16 12 H 0.08 1.70 7.34 -51.92 -0.38 1.32 16 13 C -0.15 -2.63 9.04 37.15 0.34 -2.29 16 14 C 0.02 0.50 4.43 -27.88 -0.12 0.37 16 15 C -0.52 -13.92 8.41 -34.44 -0.29 -14.21 16 16 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 19 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 25 H 0.06 0.75 7.90 -51.93 -0.41 0.34 16 26 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 27 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 28 H 0.12 1.86 7.56 -52.49 -0.40 1.47 16 29 H 0.14 1.91 8.06 -52.48 -0.42 1.49 16 30 H 0.16 2.59 8.06 -52.49 -0.42 2.16 16 31 H 0.05 0.96 7.89 -51.93 -0.41 0.55 16 32 H 0.08 1.52 6.95 -51.93 -0.36 1.16 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.02 0.62 8.04 -51.93 -0.42 0.20 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 302.12 15.07 4.55 4.55 Total: -1.00 -29.65 302.12 -8.87 -38.52 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.26 Total: 1.40 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: -3.59 Total: -25.84 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.45 Total: -34.48 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.65 -8.87 -38.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695814990.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.044 kcal (2) G-P(sol) polarization free energy of solvation -29.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds