Wall clock time and date at job start Mon Mar 30 2020 06:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36662 * 120.11724 * 2 1 4 4 C 1.38794 * 120.52732 * 179.97438 * 3 2 1 5 5 C 1.37782 * 120.66606 * 359.97438 * 4 3 2 6 6 C 1.39090 * 119.78010 * 359.76186 * 5 4 3 7 7 C 1.39592 * 120.11889 * 179.97438 * 2 1 3 8 8 C 1.46490 * 134.03673 * 359.97438 * 7 2 1 9 9 C 1.34231 * 107.00148 * 180.02562 * 8 7 2 10 10 N 1.36839 * 109.93626 * 0.02562 * 9 8 7 11 11 C 1.46500 * 125.06184 * 179.97438 * 10 9 8 12 12 H 1.09007 * 109.46734 * 180.02562 * 11 10 9 13 13 C 1.52992 * 109.47480 * 300.02529 * 11 10 9 14 14 C 1.53004 * 109.47204 * 60.02947 * 11 10 9 15 15 C 1.50701 * 109.47211 * 175.00128 * 14 11 10 16 16 H 1.08002 * 119.99761 * 359.97438 * 15 14 11 17 17 C 1.37871 * 119.99694 * 180.27574 * 15 14 11 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 14 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 14 20 20 H 1.48494 * 109.47230 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47301 * 119.99669 * 19 17 15 22 22 H 1.48498 * 109.47430 * 239.99516 * 19 17 15 23 23 H 1.08995 * 109.47109 * 270.02469 * 1 2 3 24 24 H 1.09006 * 109.46901 * 30.02244 * 1 2 3 25 25 H 1.08994 * 109.46840 * 150.02056 * 1 2 3 26 26 H 1.07999 * 119.73767 * 359.97438 * 3 2 1 27 27 H 1.08000 * 119.66260 * 180.02562 * 4 3 2 28 28 H 1.07997 * 120.11028 * 180.02562 * 5 4 3 29 29 H 1.08004 * 126.50020 * 0.02562 * 8 7 2 30 30 H 1.08001 * 125.03925 * 180.02562 * 9 8 7 31 31 H 1.09000 * 109.46966 * 60.00115 * 13 11 10 32 32 H 1.09003 * 109.47367 * 180.02562 * 13 11 10 33 33 H 1.09004 * 109.47261 * 300.00139 * 13 11 10 34 34 H 1.09000 * 109.47211 * 54.99154 * 14 11 10 35 35 H 1.09007 * 109.46376 * 294.99697 * 14 11 10 36 36 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1927 1.1821 0.0000 4 6 3.5806 1.1921 0.0005 5 6 4.2918 0.0120 0.0016 6 6 3.6145 -1.2028 0.0072 7 6 2.2075 -1.2075 0.0005 8 6 1.8075 -2.6167 0.0016 9 6 2.9352 -3.3447 0.0023 10 7 4.0249 -2.5171 0.0022 11 6 5.4204 -2.9630 0.0034 12 1 6.0793 -2.0946 0.0035 13 6 5.6859 -3.8048 1.2530 14 6 5.6876 -3.8056 -1.2455 15 6 7.1507 -4.1615 -1.3078 16 1 7.8228 -3.8204 -0.5343 17 6 7.6322 -4.9173 -2.3555 18 7 6.8138 -5.3324 -3.2976 19 14 9.4472 -5.3518 -2.4369 20 1 10.1489 -4.7683 -1.2655 21 1 9.6037 -6.8285 -2.4232 22 1 10.0319 -4.8038 -3.6871 23 1 -0.3633 0.0004 1.0276 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3633 -0.8901 -0.5135 26 1 1.6504 2.1160 -0.0004 27 1 4.1084 2.1343 0.0009 28 1 5.3717 0.0302 0.0024 29 1 0.7969 -2.9977 0.0019 30 1 2.9766 -4.4240 0.0027 31 1 5.0271 -4.6731 1.2528 32 1 6.7244 -4.1361 1.2540 33 1 5.4956 -3.2044 2.1427 34 1 5.4140 -3.2359 -2.1336 35 1 5.0932 -4.7183 -1.2018 36 1 7.1527 -5.8637 -4.0349 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695814990.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:30 Heat of formation + Delta-G solvation = 24.539950 kcal Electronic energy + Delta-G solvation = -16939.541822 eV Core-core repulsion = 14387.663475 eV Total energy + Delta-G solvation = -2551.878347 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.23603 -38.52647 -36.29343 -34.39489 -33.57313 -30.32601 -29.91965 -28.85146 -27.33780 -25.70747 -23.02868 -22.84619 -22.39041 -19.59134 -18.75691 -17.63448 -17.17761 -16.61888 -16.22131 -15.73100 -15.28363 -15.15738 -14.46410 -14.21211 -14.15439 -13.87448 -13.57352 -13.40651 -13.15513 -12.95170 -12.88472 -12.78599 -12.40660 -12.23615 -12.18675 -11.90853 -11.67150 -11.43414 -11.34234 -10.64322 -10.29246 -9.01921 -8.40465 -8.25092 -6.38539 0.27228 0.80863 1.38923 1.39815 1.52449 1.89062 2.04658 2.39189 3.02510 3.08415 3.77322 3.87208 4.02136 4.16075 4.22967 4.28985 4.39356 4.47664 4.55599 4.76606 4.79196 4.87702 4.93233 4.96336 5.01105 5.11592 5.16054 5.20160 5.33783 5.37176 5.44591 5.64623 5.69619 5.79718 5.97834 6.05740 6.08820 6.46672 6.52763 6.76539 7.31548 8.86192 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.036208 B = 0.005398 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.122420 B = 5185.983089 C = 5395.261151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.051 4.051 3 C -0.161 4.161 4 C -0.098 4.098 5 C -0.158 4.158 6 C 0.070 3.930 7 C -0.134 4.134 8 C -0.218 4.218 9 C 0.045 3.955 10 N -0.477 5.477 11 C 0.142 3.858 12 H 0.080 0.920 13 C -0.136 4.136 14 C 0.033 3.967 15 C -0.534 4.534 16 H 0.071 0.929 17 C 0.004 3.996 18 N -0.933 5.933 19 Si 0.967 3.033 20 H -0.257 1.257 21 H -0.278 1.278 22 H -0.282 1.282 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.064 0.936 26 H 0.149 0.851 27 H 0.149 0.851 28 H 0.114 0.886 29 H 0.165 0.835 30 H 0.169 0.831 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.060 0.940 34 H -0.020 1.020 35 H 0.002 0.998 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.017 9.573 8.557 15.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.052 4.052 3 C -0.180 4.180 4 C -0.117 4.117 5 C -0.178 4.178 6 C -0.037 4.037 7 C -0.139 4.139 8 C -0.243 4.243 9 C -0.081 4.081 10 N -0.159 5.159 11 C 0.041 3.959 12 H 0.098 0.902 13 C -0.194 4.194 14 C -0.005 4.005 15 C -0.572 4.572 16 H 0.089 0.911 17 C -0.195 4.195 18 N -0.572 5.572 19 Si 0.791 3.209 20 H -0.181 1.181 21 H -0.203 1.203 22 H -0.208 1.208 23 H 0.098 0.902 24 H 0.100 0.900 25 H 0.083 0.917 26 H 0.166 0.834 27 H 0.166 0.834 28 H 0.132 0.868 29 H 0.183 0.817 30 H 0.186 0.814 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.079 0.921 34 H -0.002 1.002 35 H 0.021 0.979 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.687 9.329 8.412 15.273 hybrid contribution 1.124 -0.727 -0.624 1.477 sum -7.563 8.602 7.789 13.851 Atomic orbital electron populations 1.20747 0.89207 1.03291 1.02944 1.19468 0.97201 0.90733 0.97801 1.20822 0.94006 0.97936 1.05193 1.21071 0.94584 0.96945 0.99107 1.20282 0.99509 0.90290 1.07760 1.18788 0.94640 0.85569 1.04677 1.19417 0.91696 0.94459 1.08332 1.21814 0.98262 0.90445 1.13738 1.22055 0.85703 0.97164 1.03209 1.44590 1.06655 1.03981 1.60631 1.21468 0.78321 0.98215 0.97906 0.90168 1.21934 1.03291 0.99235 0.94943 1.19217 0.96696 0.93556 0.91000 1.21483 0.93885 1.33050 1.08818 0.91057 1.25955 1.02840 0.95647 0.95025 1.70116 1.37165 1.37325 1.12629 0.85366 0.79058 0.78019 0.78435 1.18058 1.20345 1.20794 0.90206 0.89976 0.91740 0.83355 0.83370 0.86781 0.81713 0.81397 0.92451 0.90370 0.92091 1.00177 0.97934 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.13 9.95 71.24 0.71 -1.42 16 2 C -0.05 -1.45 5.87 -19.91 -0.12 -1.57 16 3 C -0.16 -4.09 9.62 22.03 0.21 -3.88 16 4 C -0.10 -2.68 10.01 22.29 0.22 -2.46 16 5 C -0.16 -5.37 9.81 22.37 0.22 -5.15 16 6 C 0.07 2.68 6.81 39.03 0.27 2.95 16 7 C -0.13 -4.65 6.14 -20.20 -0.12 -4.77 16 8 C -0.22 -7.16 10.78 23.51 0.25 -6.91 16 9 C 0.04 1.64 10.24 83.00 0.85 2.49 16 10 N -0.48 -19.02 2.65 -493.54 -1.31 -20.33 16 11 C 0.14 5.96 2.95 44.99 0.13 6.09 16 12 H 0.08 3.36 7.34 -2.38 -0.02 3.35 16 13 C -0.14 -4.89 9.04 71.98 0.65 -4.24 16 14 C 0.03 1.72 4.43 29.85 0.13 1.85 16 15 C -0.53 -29.00 8.41 25.60 0.22 -28.78 16 16 H 0.07 3.63 7.06 -2.91 -0.02 3.61 16 17 C 0.00 0.21 5.46 84.65 0.46 0.67 16 18 N -0.93 -56.05 13.29 21.45 0.28 -55.76 16 19 Si 0.97 43.00 29.54 68.60 2.03 45.03 16 20 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 21 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.08 1.32 8.08 -2.38 -0.02 1.30 16 25 H 0.06 1.31 7.90 -2.39 -0.02 1.29 16 26 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 27 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 28 H 0.11 3.76 7.56 -2.91 -0.02 3.74 16 29 H 0.17 4.32 8.06 -2.91 -0.02 4.29 16 30 H 0.17 5.62 8.06 -2.91 -0.02 5.59 16 31 H 0.06 2.01 7.89 -2.39 -0.02 1.99 16 32 H 0.08 2.85 6.95 -2.39 -0.02 2.83 16 33 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 34 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 35 H 0.00 0.13 8.04 -2.38 -0.02 0.11 16 36 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -65.41 302.12 6.13 -59.27 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 1.05 Total: 16.94 kcal Atomic # 6 Polarization: -49.24 SS G_CDS: 4.08 Total: -45.15 kcal Atomic # 7 Polarization: -75.07 SS G_CDS: -1.02 Total: -76.10 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -65.41 6.13 -59.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695814990.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.815 kcal (2) G-P(sol) polarization free energy of solvation -65.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds