Wall clock time and date at job start Mon Mar 30 2020 06:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38831 * 119.66744 * 2 1 4 4 C 1.36620 * 120.52738 * 179.97438 * 3 2 1 5 5 C 1.39630 * 119.76456 * 0.02562 * 4 3 2 6 6 C 1.46491 * 134.03245 * 179.97438 * 5 4 3 7 7 C 1.34242 * 106.99712 * 180.28525 * 6 5 4 8 8 N 1.36831 * 109.92845 * 359.56769 * 7 6 5 9 9 C 1.46501 * 125.06376 * 180.18819 * 8 7 6 10 10 H 1.08995 * 109.47521 * 180.29891 * 9 8 7 11 11 C 1.52998 * 109.47059 * 60.29348 * 9 8 7 12 12 C 1.53008 * 109.46837 * 300.30165 * 9 8 7 13 13 C 1.50692 * 109.46818 * 184.99842 * 12 9 8 14 14 H 1.08001 * 120.00597 * 359.97438 * 13 12 9 15 15 C 1.37878 * 119.99873 * 179.97438 * 13 12 9 16 16 N 1.31516 * 120.00217 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 120.00121 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46981 * 90.00148 * 17 15 13 19 19 H 1.48500 * 109.46971 * 209.99762 * 17 15 13 20 20 H 1.48492 * 109.46967 * 329.99700 * 17 15 13 21 21 C 1.37685 * 109.87415 * 0.44758 * 8 7 6 22 22 C 1.37747 * 119.66197 * 179.97438 * 2 1 3 23 23 H 1.09001 * 109.46850 * 89.99995 * 1 2 3 24 24 H 1.08999 * 109.47402 * 210.00083 * 1 2 3 25 25 H 1.08998 * 109.47113 * 330.00276 * 1 2 3 26 26 H 1.08003 * 119.73339 * 359.95856 * 3 2 1 27 27 H 1.07998 * 120.11857 * 179.97438 * 4 3 2 28 28 H 1.08002 * 126.49713 * 0.02562 * 6 5 4 29 29 H 1.07993 * 125.03368 * 179.71453 * 7 6 5 30 30 H 1.09003 * 109.47174 * 179.97438 * 11 9 8 31 31 H 1.08995 * 109.47856 * 300.00892 * 11 9 8 32 32 H 1.09007 * 109.46706 * 60.00528 * 11 9 8 33 33 H 1.09000 * 109.46513 * 304.99766 * 12 9 8 34 34 H 1.08997 * 109.47205 * 64.99328 * 12 9 8 35 35 H 0.96998 * 120.00524 * 180.02562 * 16 15 13 36 36 H 1.07996 * 120.11351 * 0.04200 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1942 1.2063 0.0000 4 6 3.5603 1.2268 0.0005 5 6 4.2716 0.0253 0.0005 6 6 5.6965 -0.3144 0.0005 7 6 5.7806 -1.6542 -0.0059 8 7 4.5259 -2.2002 -0.0002 9 6 4.2328 -3.6356 -0.0007 10 1 3.1532 -3.7860 -0.0008 11 6 4.8374 -4.2800 1.2483 12 6 4.8375 -4.2792 -1.2502 13 6 4.4328 -5.7293 -1.3141 14 1 3.8072 -6.1501 -0.5408 15 6 4.8612 -6.5191 -2.3599 16 7 5.6225 -6.0068 -3.3020 17 14 4.3589 -8.3167 -2.4396 18 1 3.0854 -8.4418 -3.1931 19 1 5.4192 -9.0969 -3.1268 20 1 4.1729 -8.8401 -1.0625 21 6 3.5800 -1.1997 0.0000 22 6 2.1887 -1.1970 0.0005 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6445 2.1360 -0.0007 27 1 4.0881 2.1690 0.0001 28 1 6.5227 0.3812 0.0009 29 1 6.7019 -2.2175 -0.0119 30 1 4.6189 -5.3479 1.2482 31 1 5.9169 -4.1296 1.2485 32 1 4.4066 -3.8215 2.1384 33 1 4.4743 -3.7611 -2.1377 34 1 5.9242 -4.2068 -1.2065 35 1 5.9236 -6.5623 -4.0379 36 1 1.6451 -2.1301 0.0003 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695820663.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:19 Heat of formation + Delta-G solvation = 38.243250 kcal Electronic energy + Delta-G solvation = -16911.608753 eV Core-core repulsion = 14360.324626 eV Total energy + Delta-G solvation = -2551.284127 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.88906 -37.32378 -34.79989 -32.57938 -31.34004 -30.17296 -28.38723 -27.08209 -25.81363 -23.87628 -22.15881 -21.23304 -20.54343 -18.63114 -16.87155 -16.08060 -15.71932 -14.85398 -14.74420 -14.24871 -13.79438 -13.78288 -13.29680 -13.15724 -12.68396 -12.33804 -12.11550 -11.95215 -11.88646 -11.58192 -11.28298 -11.06895 -10.96628 -10.84267 -10.52880 -10.44985 -10.15152 -9.66685 -9.34564 -9.12157 -8.50874 -7.63698 -7.12895 -6.14765 -4.19608 1.51558 2.02544 3.21860 3.23512 3.30059 3.31945 3.46132 4.25907 4.34568 5.01900 5.15215 5.20933 5.27565 5.33534 5.53301 5.57185 5.74783 5.79529 5.81878 5.87230 5.94283 5.99830 6.12098 6.17487 6.35194 6.41143 6.48150 6.62463 6.69932 6.85807 6.95991 7.19789 7.27969 7.42331 7.48710 7.75031 7.80002 7.93917 8.19622 8.85166 9.45304 10.96324 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.028192 B = 0.005798 C = 0.005277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.968349 B = 4828.197741 C = 5304.333707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.081 4.081 3 C -0.154 4.154 4 C -0.074 4.074 5 C -0.116 4.116 6 C -0.230 4.230 7 C 0.073 3.927 8 N -0.464 5.464 9 C 0.131 3.869 10 H 0.084 0.916 11 C -0.147 4.147 12 C 0.020 3.980 13 C -0.524 4.524 14 H 0.059 0.941 15 C 0.061 3.939 16 N -0.890 5.890 17 Si 0.895 3.105 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.102 3.898 22 C -0.123 4.123 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.139 0.861 29 H 0.163 0.837 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.040 0.960 33 H 0.022 0.978 34 H 0.024 0.976 35 H 0.263 0.737 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.580 10.495 7.424 13.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.082 4.082 3 C -0.174 4.174 4 C -0.092 4.092 5 C -0.121 4.121 6 C -0.255 4.255 7 C -0.054 4.054 8 N -0.144 5.144 9 C 0.030 3.970 10 H 0.102 0.898 11 C -0.204 4.204 12 C -0.017 4.017 13 C -0.563 4.563 14 H 0.078 0.922 15 C -0.141 4.141 16 N -0.528 5.528 17 Si 0.723 3.277 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.006 4.006 22 C -0.144 4.144 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.132 0.868 27 H 0.133 0.867 28 H 0.157 0.843 29 H 0.180 0.820 30 H 0.101 0.899 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.041 0.959 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.526 10.063 7.267 13.212 hybrid contribution -0.081 -1.087 -0.282 1.126 sum -4.607 8.975 6.984 12.271 Atomic orbital electron populations 1.20711 0.91555 1.02166 1.01949 1.19420 0.95338 0.92303 1.01162 1.20359 0.93888 0.96859 1.06270 1.20135 0.93496 0.96002 0.99580 1.19210 0.93427 0.92327 1.07158 1.21507 0.94166 0.94179 1.15618 1.21767 0.88533 0.93571 1.01560 1.44685 1.04111 1.06318 1.59273 1.21826 1.00964 0.74996 0.99178 0.89810 1.22046 1.00807 1.02135 0.95458 1.19442 0.96548 0.95430 0.90311 1.21028 1.32214 0.94247 1.08783 0.92233 1.25000 0.94881 0.98794 0.95449 1.69964 1.34677 1.36368 1.11800 0.86541 0.78315 0.84576 0.78294 1.20538 1.21096 1.19743 1.18302 0.90908 0.87950 1.03452 1.19887 0.90351 0.97941 1.06186 0.91553 0.91935 0.91937 0.86788 0.86718 0.84291 0.81996 0.89929 0.92637 0.94091 0.95939 0.95800 0.92730 0.86585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 9.99 36.01 0.36 -0.85 16 2 C -0.08 -1.20 5.88 -104.58 -0.61 -1.81 16 3 C -0.15 -2.19 9.61 -39.95 -0.38 -2.58 16 4 C -0.07 -1.12 10.05 -39.65 -0.40 -1.52 16 5 C -0.12 -2.06 6.37 -105.14 -0.67 -2.73 16 6 C -0.23 -3.85 11.08 -37.67 -0.42 -4.26 16 7 C 0.07 1.31 10.25 -16.73 -0.17 1.14 16 8 N -0.46 -9.00 2.65 -107.35 -0.28 -9.28 16 9 C 0.13 2.66 2.95 -67.93 -0.20 2.46 16 10 H 0.08 1.70 7.34 -51.93 -0.38 1.32 16 11 C -0.15 -2.64 9.04 37.16 0.34 -2.30 16 12 C 0.02 0.50 4.42 -27.88 -0.12 0.38 16 13 C -0.52 -13.95 8.41 -34.44 -0.29 -14.24 16 14 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 17 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 21 C 0.10 1.93 6.81 -83.99 -0.57 1.36 16 22 C -0.12 -2.11 9.44 -39.43 -0.37 -2.48 16 23 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 25 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 26 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 27 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 29 H 0.16 2.60 8.06 -52.49 -0.42 2.18 16 30 H 0.08 1.52 6.95 -51.93 -0.36 1.16 16 31 H 0.05 0.97 7.90 -51.93 -0.41 0.55 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.02 0.62 8.03 -51.93 -0.42 0.20 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.12 1.90 7.56 -52.49 -0.40 1.50 16 LS Contribution 302.54 15.07 4.56 4.56 Total: -1.00 -29.61 302.54 -8.90 -38.51 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -5.27 Total: 1.47 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: -3.62 Total: -25.86 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.45 Total: -34.52 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.61 -8.90 -38.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695820663.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.753 kcal (2) G-P(sol) polarization free energy of solvation -29.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds