Wall clock time and date at job start Mon Mar 30 2020 06:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38831 * 119.66744 * 2 1 4 4 C 1.36620 * 120.52738 * 179.97438 * 3 2 1 5 5 C 1.39630 * 119.76456 * 0.02562 * 4 3 2 6 6 C 1.46491 * 134.03245 * 179.97438 * 5 4 3 7 7 C 1.34242 * 106.99712 * 180.28525 * 6 5 4 8 8 N 1.36831 * 109.92845 * 359.56769 * 7 6 5 9 9 C 1.46501 * 125.06376 * 180.18819 * 8 7 6 10 10 H 1.08995 * 109.47521 * 180.29891 * 9 8 7 11 11 C 1.52998 * 109.47059 * 60.29348 * 9 8 7 12 12 C 1.53008 * 109.46837 * 300.30165 * 9 8 7 13 13 C 1.50692 * 109.46818 * 184.99842 * 12 9 8 14 14 H 1.08001 * 120.00597 * 359.97438 * 13 12 9 15 15 C 1.37878 * 119.99873 * 179.97438 * 13 12 9 16 16 N 1.31516 * 120.00217 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 120.00121 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46981 * 90.00148 * 17 15 13 19 19 H 1.48500 * 109.46971 * 209.99762 * 17 15 13 20 20 H 1.48492 * 109.46967 * 329.99700 * 17 15 13 21 21 C 1.37685 * 109.87415 * 0.44758 * 8 7 6 22 22 C 1.37747 * 119.66197 * 179.97438 * 2 1 3 23 23 H 1.09001 * 109.46850 * 89.99995 * 1 2 3 24 24 H 1.08999 * 109.47402 * 210.00083 * 1 2 3 25 25 H 1.08998 * 109.47113 * 330.00276 * 1 2 3 26 26 H 1.08003 * 119.73339 * 359.95856 * 3 2 1 27 27 H 1.07998 * 120.11857 * 179.97438 * 4 3 2 28 28 H 1.08002 * 126.49713 * 0.02562 * 6 5 4 29 29 H 1.07993 * 125.03368 * 179.71453 * 7 6 5 30 30 H 1.09003 * 109.47174 * 179.97438 * 11 9 8 31 31 H 1.08995 * 109.47856 * 300.00892 * 11 9 8 32 32 H 1.09007 * 109.46706 * 60.00528 * 11 9 8 33 33 H 1.09000 * 109.46513 * 304.99766 * 12 9 8 34 34 H 1.08997 * 109.47205 * 64.99328 * 12 9 8 35 35 H 0.96998 * 120.00524 * 180.02562 * 16 15 13 36 36 H 1.07996 * 120.11351 * 0.04200 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1942 1.2063 0.0000 4 6 3.5603 1.2268 0.0005 5 6 4.2716 0.0253 0.0005 6 6 5.6965 -0.3144 0.0005 7 6 5.7806 -1.6542 -0.0059 8 7 4.5259 -2.2002 -0.0002 9 6 4.2328 -3.6356 -0.0007 10 1 3.1532 -3.7860 -0.0008 11 6 4.8374 -4.2800 1.2483 12 6 4.8375 -4.2792 -1.2502 13 6 4.4328 -5.7293 -1.3141 14 1 3.8072 -6.1501 -0.5408 15 6 4.8612 -6.5191 -2.3599 16 7 5.6225 -6.0068 -3.3020 17 14 4.3589 -8.3167 -2.4396 18 1 3.0854 -8.4418 -3.1931 19 1 5.4192 -9.0969 -3.1268 20 1 4.1729 -8.8401 -1.0625 21 6 3.5800 -1.1997 0.0000 22 6 2.1887 -1.1970 0.0005 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6445 2.1360 -0.0007 27 1 4.0881 2.1690 0.0001 28 1 6.5227 0.3812 0.0009 29 1 6.7019 -2.2175 -0.0119 30 1 4.6189 -5.3479 1.2482 31 1 5.9169 -4.1296 1.2485 32 1 4.4066 -3.8215 2.1384 33 1 4.4743 -3.7611 -2.1377 34 1 5.9242 -4.2068 -1.2065 35 1 5.9236 -6.5623 -4.0379 36 1 1.6451 -2.1301 0.0003 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695820663.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:19 Heat of formation + Delta-G solvation = 24.300623 kcal Electronic energy + Delta-G solvation = -16912.213351 eV Core-core repulsion = 14360.324626 eV Total energy + Delta-G solvation = -2551.888725 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.21851 -38.60499 -36.45366 -34.43860 -32.67380 -31.38822 -29.90270 -28.81910 -26.93408 -25.73047 -23.51535 -22.77150 -21.77738 -20.05278 -18.76519 -17.63996 -17.09531 -16.62204 -16.01836 -15.70828 -15.27521 -15.11186 -14.59527 -14.45216 -14.19776 -13.89786 -13.63719 -13.30337 -13.10689 -12.91527 -12.85421 -12.73958 -12.45529 -12.36095 -12.16104 -11.88540 -11.67370 -11.38257 -11.34596 -10.63563 -10.45076 -8.92866 -8.45343 -8.25288 -6.38546 0.27153 0.78835 1.39581 1.40312 1.51389 1.87678 2.04326 2.39168 3.02275 3.08350 3.77181 3.83480 4.02744 4.10632 4.22218 4.28847 4.40002 4.48088 4.60804 4.66428 4.80959 4.88959 4.90185 4.94887 5.00906 5.08089 5.14415 5.19719 5.33249 5.34634 5.44022 5.64968 5.69592 5.78176 5.96798 6.05503 6.07362 6.45732 6.52306 6.76206 7.31406 8.86083 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.028192 B = 0.005798 C = 0.005277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.968349 B = 4828.197741 C = 5304.333707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.075 4.075 3 C -0.154 4.154 4 C -0.075 4.075 5 C -0.142 4.142 6 C -0.220 4.220 7 C 0.044 3.956 8 N -0.478 5.478 9 C 0.143 3.857 10 H 0.079 0.921 11 C -0.136 4.136 12 C 0.033 3.967 13 C -0.535 4.535 14 H 0.071 0.929 15 C 0.004 3.996 16 N -0.932 5.932 17 Si 0.967 3.033 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.257 1.257 21 C 0.072 3.928 22 C -0.154 4.154 23 H 0.075 0.925 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.150 0.850 27 H 0.144 0.856 28 H 0.167 0.833 29 H 0.169 0.831 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.060 0.940 33 H -0.020 1.020 34 H 0.003 0.997 35 H 0.264 0.736 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.882 11.472 8.516 15.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.076 4.076 3 C -0.172 4.172 4 C -0.093 4.093 5 C -0.147 4.147 6 C -0.245 4.245 7 C -0.082 4.082 8 N -0.159 5.159 9 C 0.041 3.959 10 H 0.097 0.903 11 C -0.194 4.194 12 C -0.005 4.005 13 C -0.573 4.573 14 H 0.089 0.911 15 C -0.195 4.195 16 N -0.572 5.572 17 Si 0.791 3.209 18 H -0.201 1.201 19 H -0.209 1.209 20 H -0.181 1.181 21 C -0.035 4.035 22 C -0.174 4.174 23 H 0.093 0.907 24 H 0.084 0.916 25 H 0.106 0.894 26 H 0.168 0.832 27 H 0.161 0.839 28 H 0.185 0.815 29 H 0.186 0.814 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.079 0.921 33 H -0.002 1.002 34 H 0.021 0.979 35 H 0.073 0.927 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.832 11.059 8.378 15.050 hybrid contribution 0.263 -1.237 -0.642 1.418 sum -5.569 9.822 7.736 13.687 Atomic orbital electron populations 1.20793 0.88958 1.03630 1.02905 1.19912 0.97291 0.91714 0.98668 1.20823 0.93809 0.97992 1.04625 1.20544 0.94193 0.96205 0.98365 1.19600 0.93879 0.92924 1.08247 1.21885 0.94819 0.94063 1.13692 1.22060 0.88434 0.94449 1.03240 1.44591 1.04911 1.05733 1.60689 1.21460 1.00333 0.76153 0.97916 0.90253 1.21933 1.00889 1.01623 0.94948 1.19214 0.95182 0.95087 0.90978 1.21448 1.31867 0.95066 1.08961 0.91072 1.25965 0.94782 1.03708 0.95031 1.70111 1.36197 1.38240 1.12651 0.85412 0.77834 0.78678 0.78949 1.20055 1.20920 1.18122 1.18759 0.91749 0.88423 1.04546 1.20115 0.90019 0.99029 1.08287 0.90684 0.91581 0.89445 0.83193 0.83863 0.81517 0.81376 0.90376 0.92440 0.92094 1.00203 0.97915 0.92687 0.87018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.11 9.99 71.24 0.71 -1.40 16 2 C -0.07 -2.07 5.88 -19.84 -0.12 -2.19 16 3 C -0.15 -3.89 9.61 22.03 0.21 -3.68 16 4 C -0.07 -2.10 10.05 22.23 0.22 -1.87 16 5 C -0.14 -4.92 6.37 -20.20 -0.13 -5.05 16 6 C -0.22 -7.26 11.08 23.51 0.26 -7.00 16 7 C 0.04 1.62 10.25 83.00 0.85 2.47 16 8 N -0.48 -19.14 2.65 -493.53 -1.31 -20.45 16 9 C 0.14 6.00 2.95 44.99 0.13 6.13 16 10 H 0.08 3.35 7.34 -2.39 -0.02 3.33 16 11 C -0.14 -4.91 9.04 71.98 0.65 -4.26 16 12 C 0.03 1.73 4.42 29.85 0.13 1.86 16 13 C -0.54 -29.09 8.41 25.60 0.22 -28.88 16 14 H 0.07 3.62 7.06 -2.91 -0.02 3.60 16 15 C 0.00 0.20 5.46 84.65 0.46 0.66 16 16 N -0.93 -56.07 13.29 21.45 0.28 -55.78 16 17 Si 0.97 42.98 29.54 68.60 2.03 45.01 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 20 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 21 C 0.07 2.77 6.81 39.03 0.27 3.04 16 22 C -0.15 -5.30 9.44 22.37 0.21 -5.08 16 23 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.07 1.27 8.08 -2.39 -0.02 1.25 16 25 H 0.09 1.32 8.08 -2.39 -0.02 1.30 16 26 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 27 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 28 H 0.17 4.35 8.06 -2.91 -0.02 4.33 16 29 H 0.17 5.65 8.06 -2.91 -0.02 5.63 16 30 H 0.08 2.86 6.95 -2.39 -0.02 2.84 16 31 H 0.06 2.02 7.90 -2.39 -0.02 2.00 16 32 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 33 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 34 H 0.00 0.14 8.03 -2.39 -0.02 0.12 16 35 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 36 H 0.11 3.77 7.56 -2.91 -0.02 3.75 16 Total: -1.00 -65.43 302.54 6.13 -59.30 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 1.04 Total: 17.17 kcal Atomic # 6 Polarization: -49.33 SS G_CDS: 4.08 Total: -45.25 kcal Atomic # 7 Polarization: -75.20 SS G_CDS: -1.02 Total: -76.23 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -65.43 6.13 -59.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695820663.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.603 kcal (2) G-P(sol) polarization free energy of solvation -65.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds