Wall clock time and date at job start Mon Mar 30 2020 06:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38825 * 119.66825 * 2 1 4 4 C 1.36625 * 120.52647 * 179.97438 * 3 2 1 5 5 C 1.39630 * 119.76645 * 359.97438 * 4 3 2 6 6 C 1.46486 * 134.03316 * 179.97438 * 5 4 3 7 7 C 1.34240 * 106.99834 * 179.75457 * 6 5 4 8 8 N 1.36834 * 109.92925 * 0.43366 * 7 6 5 9 9 C 1.46495 * 125.06383 * 179.81693 * 8 7 6 10 10 H 1.09007 * 109.47365 * 179.69287 * 9 8 7 11 11 C 1.52995 * 109.47276 * 299.69313 * 9 8 7 12 12 C 1.53006 * 109.47168 * 59.69573 * 9 8 7 13 13 C 1.50698 * 109.47184 * 175.00313 * 12 9 8 14 14 H 1.08005 * 119.99819 * 359.97438 * 13 12 9 15 15 C 1.37875 * 120.00046 * 180.02562 * 13 12 9 16 16 N 1.31520 * 119.99809 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99912 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47123 * 90.00333 * 17 15 13 19 19 H 1.48506 * 109.46940 * 210.00455 * 17 15 13 20 20 H 1.48493 * 109.47121 * 329.99876 * 17 15 13 21 21 C 1.37686 * 109.87307 * 359.54789 * 8 7 6 22 22 C 1.37755 * 119.66132 * 180.02562 * 2 1 3 23 23 H 1.08995 * 109.47698 * 269.98357 * 1 2 3 24 24 H 1.09000 * 109.46598 * 29.98618 * 1 2 3 25 25 H 1.09002 * 109.46964 * 149.97942 * 1 2 3 26 26 H 1.07992 * 119.73752 * 359.96642 * 3 2 1 27 27 H 1.07998 * 120.11889 * 179.97438 * 4 3 2 28 28 H 1.08004 * 126.50334 * 0.03528 * 6 5 4 29 29 H 1.08003 * 125.04129 * 180.26577 * 7 6 5 30 30 H 1.09003 * 109.47743 * 179.97438 * 11 9 8 31 31 H 1.09002 * 109.47112 * 300.00189 * 11 9 8 32 32 H 1.09006 * 109.47389 * 60.00012 * 11 9 8 33 33 H 1.09001 * 109.47002 * 294.99717 * 12 9 8 34 34 H 1.08993 * 109.46955 * 55.00154 * 12 9 8 35 35 H 0.97004 * 119.99097 * 179.97438 * 16 15 13 36 36 H 1.07998 * 120.11388 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1942 1.2063 0.0000 4 6 3.5603 1.2267 0.0005 5 6 4.2716 0.0252 0.0016 6 6 5.6965 -0.3145 0.0019 7 6 5.7805 -1.6543 0.0086 8 7 4.5259 -2.2003 0.0029 9 6 4.2327 -3.6357 0.0037 10 1 3.1531 -3.7861 0.0038 11 6 4.8374 -4.2804 -1.2451 12 6 4.8373 -4.2790 1.2535 13 6 4.4326 -5.7292 1.3177 14 1 3.8065 -6.1499 0.5447 15 6 4.8608 -6.5187 2.3638 16 7 4.5071 -7.7842 2.4201 17 14 5.9431 -5.7908 3.7011 18 1 5.0893 -5.2468 4.7874 19 1 6.8295 -6.8481 4.2505 20 1 6.7710 -4.6993 3.1283 21 6 3.5800 -1.1999 0.0023 22 6 2.1887 -1.1970 -0.0005 23 1 -0.3634 -0.0003 1.0276 24 1 -0.3632 0.8901 -0.5136 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6445 2.1358 -0.0005 27 1 4.0881 2.1689 0.0001 28 1 6.5228 0.3810 0.0018 29 1 6.7019 -2.2178 0.0147 30 1 4.6197 -5.3485 -1.2443 31 1 4.4067 -3.8221 -2.1353 32 1 5.9170 -4.1301 -1.2451 33 1 5.9240 -4.2067 1.2098 34 1 4.4739 -3.7607 2.1408 35 1 4.8088 -8.3397 3.1560 36 1 1.6451 -2.1302 -0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695820664.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:21 Heat of formation + Delta-G solvation = 41.966263 kcal Electronic energy + Delta-G solvation = -16972.370382 eV Core-core repulsion = 14421.247697 eV Total energy + Delta-G solvation = -2551.122685 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.99612 -37.41991 -34.91306 -32.57024 -31.45820 -30.26597 -28.66895 -27.51480 -25.88939 -23.71511 -22.15741 -21.16758 -20.59812 -18.67544 -17.30542 -16.17138 -15.87605 -14.93298 -14.67321 -14.22338 -13.95082 -13.78316 -13.40945 -13.28469 -12.76806 -12.60587 -12.18995 -12.16595 -11.94645 -11.68392 -11.37699 -11.21806 -11.03261 -10.88820 -10.55235 -10.25849 -10.01767 -9.93755 -9.40506 -9.22971 -8.68271 -7.73403 -7.23208 -6.19042 -4.19633 1.43075 1.94229 3.10839 3.22428 3.30324 3.33064 3.33891 4.17836 4.32794 4.93798 5.08651 5.12759 5.17946 5.25182 5.46576 5.48261 5.69410 5.71658 5.72899 5.78662 5.87506 5.93604 6.02234 6.09306 6.25909 6.32208 6.39522 6.45977 6.68854 6.77795 6.88324 6.94522 7.04258 7.13235 7.21416 7.51931 7.68257 7.83813 8.32975 8.81822 9.41769 10.93282 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.026388 B = 0.006257 C = 0.005866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.818386 B = 4474.088328 C = 4771.755763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.079 4.079 3 C -0.153 4.153 4 C -0.073 4.073 5 C -0.117 4.117 6 C -0.227 4.227 7 C 0.068 3.932 8 N -0.468 5.468 9 C 0.141 3.859 10 H 0.090 0.910 11 C -0.148 4.148 12 C -0.017 4.017 13 C -0.523 4.523 14 H 0.077 0.923 15 C 0.073 3.927 16 N -0.896 5.896 17 Si 0.877 3.123 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.266 1.266 21 C 0.102 3.898 22 C -0.124 4.124 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.140 0.860 29 H 0.162 0.838 30 H 0.087 0.913 31 H 0.043 0.957 32 H 0.054 0.946 33 H 0.023 0.977 34 H 0.018 0.982 35 H 0.265 0.735 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.094 14.973 -5.511 16.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.080 4.080 3 C -0.172 4.172 4 C -0.092 4.092 5 C -0.122 4.122 6 C -0.252 4.252 7 C -0.060 4.060 8 N -0.148 5.148 9 C 0.040 3.960 10 H 0.108 0.892 11 C -0.206 4.206 12 C -0.055 4.055 13 C -0.562 4.562 14 H 0.095 0.905 15 C -0.129 4.129 16 N -0.534 5.534 17 Si 0.704 3.296 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.190 1.190 21 C -0.005 4.005 22 C -0.144 4.144 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.158 0.842 29 H 0.180 0.820 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.041 0.959 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.120 14.413 -5.414 15.541 hybrid contribution 0.686 0.131 0.888 1.129 sum -1.434 14.544 -4.526 15.299 Atomic orbital electron populations 1.20721 0.91455 1.02283 1.02013 1.19442 0.95422 0.92269 1.00876 1.20378 0.93881 0.96922 1.06058 1.20142 0.93511 0.95997 0.99546 1.19210 0.93383 0.92354 1.07238 1.21520 0.94233 0.94148 1.15265 1.21766 0.88499 0.93636 1.02064 1.44697 1.04155 1.06317 1.59622 1.21581 1.01273 0.74775 0.98340 0.89209 1.22055 1.00637 1.02586 0.95285 1.19932 0.96532 0.97053 0.91937 1.20896 1.32981 0.91951 1.10328 0.90479 1.24947 0.95647 0.94664 0.97668 1.69894 1.45336 1.05967 1.32223 0.86817 0.81135 0.79140 0.82469 1.20174 1.21133 1.19049 1.18300 0.90914 0.87861 1.03452 1.19918 0.90317 0.98064 1.06113 0.91497 0.91882 0.91823 0.86708 0.86673 0.84241 0.82038 0.89419 0.93814 0.92702 0.95881 0.96383 0.92468 0.86415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 9.99 36.01 0.36 -0.82 16 2 C -0.08 -1.12 5.88 -104.58 -0.61 -1.73 16 3 C -0.15 -2.08 9.61 -39.95 -0.38 -2.46 16 4 C -0.07 -1.06 10.05 -39.64 -0.40 -1.46 16 5 C -0.12 -1.97 6.37 -105.14 -0.67 -2.64 16 6 C -0.23 -3.58 11.08 -37.67 -0.42 -3.99 16 7 C 0.07 1.13 10.25 -16.73 -0.17 0.96 16 8 N -0.47 -8.62 2.65 -107.34 -0.28 -8.91 16 9 C 0.14 2.75 2.95 -67.93 -0.20 2.55 16 10 H 0.09 1.77 7.34 -51.93 -0.38 1.39 16 11 C -0.15 -2.61 9.04 37.15 0.34 -2.27 16 12 C -0.02 -0.38 3.49 -27.88 -0.10 -0.48 16 13 C -0.52 -14.05 8.96 -34.44 -0.31 -14.36 16 14 H 0.08 2.19 7.30 -52.48 -0.38 1.80 16 15 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 16 N -0.90 -26.63 13.96 55.43 0.77 -25.86 16 17 Si 0.88 21.29 27.47 -169.99 -4.67 16.62 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 21 C 0.10 1.85 6.81 -83.99 -0.57 1.28 16 22 C -0.12 -2.04 9.44 -39.43 -0.37 -2.41 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 25 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 26 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 27 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 28 H 0.14 1.81 8.06 -52.48 -0.42 1.38 16 29 H 0.16 2.38 8.06 -52.48 -0.42 1.96 16 30 H 0.09 1.65 6.95 -51.93 -0.36 1.29 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.92 7.90 -51.93 -0.41 0.51 16 33 H 0.02 0.53 7.09 -51.93 -0.37 0.16 16 34 H 0.02 0.43 7.57 -51.93 -0.39 0.04 16 35 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.12 1.86 7.56 -52.49 -0.40 1.46 16 LS Contribution 298.94 15.07 4.50 4.50 Total: -1.00 -29.83 298.94 -8.52 -38.35 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -5.24 Total: 1.18 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: -3.61 Total: -25.89 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 0.49 Total: -34.77 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.83 -8.52 -38.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695820664.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.315 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds