Wall clock time and date at job start Mon Mar 30 2020 06:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38825 * 119.66825 * 2 1 4 4 C 1.36625 * 120.52647 * 179.97438 * 3 2 1 5 5 C 1.39630 * 119.76645 * 359.97438 * 4 3 2 6 6 C 1.46486 * 134.03316 * 179.97438 * 5 4 3 7 7 C 1.34240 * 106.99834 * 179.75457 * 6 5 4 8 8 N 1.36834 * 109.92925 * 0.43366 * 7 6 5 9 9 C 1.46495 * 125.06383 * 179.81693 * 8 7 6 10 10 H 1.09007 * 109.47365 * 179.69287 * 9 8 7 11 11 C 1.52995 * 109.47276 * 299.69313 * 9 8 7 12 12 C 1.53006 * 109.47168 * 59.69573 * 9 8 7 13 13 C 1.50698 * 109.47184 * 175.00313 * 12 9 8 14 14 H 1.08005 * 119.99819 * 359.97438 * 13 12 9 15 15 C 1.37875 * 120.00046 * 180.02562 * 13 12 9 16 16 N 1.31520 * 119.99809 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99912 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47123 * 90.00333 * 17 15 13 19 19 H 1.48506 * 109.46940 * 210.00455 * 17 15 13 20 20 H 1.48493 * 109.47121 * 329.99876 * 17 15 13 21 21 C 1.37686 * 109.87307 * 359.54789 * 8 7 6 22 22 C 1.37755 * 119.66132 * 180.02562 * 2 1 3 23 23 H 1.08995 * 109.47698 * 269.98357 * 1 2 3 24 24 H 1.09000 * 109.46598 * 29.98618 * 1 2 3 25 25 H 1.09002 * 109.46964 * 149.97942 * 1 2 3 26 26 H 1.07992 * 119.73752 * 359.96642 * 3 2 1 27 27 H 1.07998 * 120.11889 * 179.97438 * 4 3 2 28 28 H 1.08004 * 126.50334 * 0.03528 * 6 5 4 29 29 H 1.08003 * 125.04129 * 180.26577 * 7 6 5 30 30 H 1.09003 * 109.47743 * 179.97438 * 11 9 8 31 31 H 1.09002 * 109.47112 * 300.00189 * 11 9 8 32 32 H 1.09006 * 109.47389 * 60.00012 * 11 9 8 33 33 H 1.09001 * 109.47002 * 294.99717 * 12 9 8 34 34 H 1.08993 * 109.46955 * 55.00154 * 12 9 8 35 35 H 0.97004 * 119.99097 * 179.97438 * 16 15 13 36 36 H 1.07998 * 120.11388 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1942 1.2063 0.0000 4 6 3.5603 1.2267 0.0005 5 6 4.2716 0.0252 0.0016 6 6 5.6965 -0.3145 0.0019 7 6 5.7805 -1.6543 0.0086 8 7 4.5259 -2.2003 0.0029 9 6 4.2327 -3.6357 0.0037 10 1 3.1531 -3.7861 0.0038 11 6 4.8374 -4.2804 -1.2451 12 6 4.8373 -4.2790 1.2535 13 6 4.4326 -5.7292 1.3177 14 1 3.8065 -6.1499 0.5447 15 6 4.8608 -6.5187 2.3638 16 7 4.5071 -7.7842 2.4201 17 14 5.9431 -5.7908 3.7011 18 1 5.0893 -5.2468 4.7874 19 1 6.8295 -6.8481 4.2505 20 1 6.7710 -4.6993 3.1283 21 6 3.5800 -1.1999 0.0023 22 6 2.1887 -1.1970 -0.0005 23 1 -0.3634 -0.0003 1.0276 24 1 -0.3632 0.8901 -0.5136 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6445 2.1358 -0.0005 27 1 4.0881 2.1689 0.0001 28 1 6.5228 0.3810 0.0018 29 1 6.7019 -2.2178 0.0147 30 1 4.6197 -5.3485 -1.2443 31 1 4.4067 -3.8221 -2.1353 32 1 5.9170 -4.1301 -1.2451 33 1 5.9240 -4.2067 1.2098 34 1 4.4739 -3.7607 2.1408 35 1 4.8088 -8.3397 3.1560 36 1 1.6451 -2.1302 -0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695820664.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:21 Heat of formation + Delta-G solvation = 27.424476 kcal Electronic energy + Delta-G solvation = -16973.000961 eV Core-core repulsion = 14421.247697 eV Total energy + Delta-G solvation = -2551.753265 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.23997 -38.63413 -36.48463 -34.46783 -32.75381 -31.40473 -30.22143 -29.06987 -26.94548 -25.45696 -23.43015 -22.68101 -21.77554 -20.02739 -19.23255 -17.65052 -17.13910 -16.48393 -16.02695 -15.71838 -15.44678 -15.06804 -14.75960 -14.56551 -14.28534 -13.95926 -13.78110 -13.33247 -13.13938 -13.03843 -12.87159 -12.72988 -12.44542 -12.26082 -12.06778 -11.78107 -11.70662 -11.53902 -11.42802 -10.83948 -10.46676 -8.94132 -8.45839 -8.35350 -6.40286 0.26495 0.77639 1.30124 1.32107 1.42292 1.87726 2.00568 2.28906 2.99192 3.01607 3.73855 3.80439 4.01771 4.09942 4.16145 4.25580 4.34394 4.46986 4.59744 4.65904 4.76990 4.84892 4.88488 4.88977 4.97879 5.06137 5.11102 5.14107 5.17383 5.29418 5.34634 5.49816 5.65028 5.77895 5.95978 6.05311 6.15707 6.44164 6.49766 6.66123 7.24209 8.79854 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.026388 B = 0.006257 C = 0.005866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.818386 B = 4474.088328 C = 4771.755763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.074 4.074 3 C -0.153 4.153 4 C -0.074 4.074 5 C -0.140 4.140 6 C -0.217 4.217 7 C 0.044 3.956 8 N -0.480 5.480 9 C 0.150 3.850 10 H 0.077 0.923 11 C -0.138 4.138 12 C -0.007 4.007 13 C -0.523 4.523 14 H 0.048 0.952 15 C 0.016 3.984 16 N -0.941 5.941 17 Si 0.939 3.061 18 H -0.275 1.275 19 H -0.279 1.279 20 H -0.250 1.250 21 C 0.074 3.926 22 C -0.155 4.155 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.063 0.937 26 H 0.149 0.851 27 H 0.144 0.856 28 H 0.169 0.831 29 H 0.177 0.823 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.029 0.971 34 H 0.006 0.994 35 H 0.268 0.732 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.629 18.001 -5.445 18.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.076 4.076 3 C -0.172 4.172 4 C -0.092 4.092 5 C -0.145 4.145 6 C -0.242 4.242 7 C -0.082 4.082 8 N -0.162 5.162 9 C 0.049 3.951 10 H 0.095 0.905 11 C -0.196 4.196 12 C -0.045 4.045 13 C -0.562 4.562 14 H 0.066 0.934 15 C -0.182 4.182 16 N -0.581 5.581 17 Si 0.763 3.237 18 H -0.200 1.200 19 H -0.205 1.205 20 H -0.173 1.173 21 C -0.033 4.033 22 C -0.176 4.176 23 H 0.094 0.906 24 H 0.105 0.895 25 H 0.082 0.918 26 H 0.167 0.833 27 H 0.162 0.838 28 H 0.186 0.814 29 H 0.194 0.806 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.048 0.952 34 H 0.025 0.975 35 H 0.077 0.923 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.651 17.472 -5.361 18.350 hybrid contribution 0.415 -0.728 0.809 1.165 sum -1.236 16.744 -4.552 17.395 Atomic orbital electron populations 1.20797 0.89168 1.03542 1.02907 1.19896 0.97190 0.91790 0.98690 1.20815 0.93914 0.97895 1.04579 1.20547 0.94100 0.96318 0.98279 1.19605 0.94032 0.92754 1.08106 1.21901 0.94648 0.94175 1.13432 1.22148 0.88371 0.94433 1.03260 1.44561 1.05066 1.05439 1.61090 1.21215 1.00321 0.76177 0.97401 0.90508 1.21937 1.01301 1.01224 0.95147 1.19771 0.96838 0.94633 0.93289 1.21154 1.31827 0.93943 1.09253 0.93391 1.25796 0.97257 0.94953 1.00182 1.70025 1.47206 1.07498 1.33410 0.85826 0.79538 0.78853 0.79467 1.20012 1.20478 1.17342 1.18709 0.91605 0.88445 1.04565 1.20116 0.90227 0.98925 1.08302 0.90636 0.89493 0.91767 0.83325 0.83822 0.81396 0.80623 0.91292 0.92186 0.91615 0.95241 0.97549 0.92298 0.87243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.09 9.99 71.24 0.71 -1.38 16 2 C -0.07 -1.98 5.88 -19.84 -0.12 -2.10 16 3 C -0.15 -3.65 9.61 22.03 0.21 -3.44 16 4 C -0.07 -1.92 10.05 22.23 0.22 -1.70 16 5 C -0.14 -4.48 6.37 -20.20 -0.13 -4.61 16 6 C -0.22 -6.37 11.08 23.51 0.26 -6.11 16 7 C 0.04 1.40 10.25 83.00 0.85 2.25 16 8 N -0.48 -17.59 2.65 -493.53 -1.31 -18.90 16 9 C 0.15 5.98 2.95 44.99 0.13 6.11 16 10 H 0.08 3.19 7.34 -2.38 -0.02 3.17 16 11 C -0.14 -4.91 9.04 71.98 0.65 -4.26 16 12 C -0.01 -0.34 3.49 29.85 0.10 -0.23 16 13 C -0.52 -28.89 8.96 25.60 0.23 -28.66 16 14 H 0.05 2.86 7.30 -2.91 -0.02 2.84 16 15 C 0.02 0.93 5.47 84.65 0.46 1.39 16 16 N -0.94 -57.38 13.96 21.45 0.30 -57.09 16 17 Si 0.94 43.90 27.47 68.60 1.88 45.79 16 18 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 21 C 0.07 2.64 6.81 39.03 0.27 2.90 16 22 C -0.16 -5.11 9.44 22.37 0.21 -4.90 16 23 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.09 1.28 8.08 -2.39 -0.02 1.26 16 25 H 0.06 1.24 8.08 -2.39 -0.02 1.22 16 26 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 27 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 28 H 0.17 3.79 8.06 -2.91 -0.02 3.76 16 29 H 0.18 4.90 8.06 -2.91 -0.02 4.87 16 30 H 0.07 2.69 6.95 -2.39 -0.02 2.67 16 31 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.06 2.16 7.90 -2.38 -0.02 2.14 16 33 H 0.03 1.33 7.09 -2.39 -0.02 1.31 16 34 H 0.01 0.30 7.57 -2.39 -0.02 0.28 16 35 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 36 H 0.11 3.62 7.56 -2.91 -0.02 3.60 16 Total: -1.00 -64.96 298.94 5.94 -59.02 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.99 Total: 15.90 kcal Atomic # 6 Polarization: -48.80 SS G_CDS: 4.07 Total: -44.73 kcal Atomic # 7 Polarization: -74.97 SS G_CDS: -1.01 Total: -75.98 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.88 Total: 45.79 kcal Total: -64.96 5.94 -59.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695820664.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.446 kcal (2) G-P(sol) polarization free energy of solvation -64.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds