Wall clock time and date at job start Mon Mar 30 2020 05:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38837 * 119.73079 * 2 1 4 4 C 1.37749 * 120.66086 * 180.29214 * 3 2 1 5 5 C 1.39129 * 119.78305 * 359.70025 * 4 3 2 6 6 C 1.40672 * 119.32989 * 359.97438 * 5 4 3 7 7 C 1.46487 * 106.03992 * 180.02562 * 6 5 4 8 8 C 1.34241 * 106.99389 * 0.02562 * 7 6 5 9 9 N 1.36827 * 109.93459 * 359.97438 * 8 7 6 10 10 C 1.46495 * 125.06390 * 180.02562 * 9 8 7 11 11 H 1.08999 * 109.46928 * 179.97438 * 10 9 8 12 12 C 1.52998 * 109.47150 * 59.97687 * 10 9 8 13 13 C 1.53006 * 109.47225 * 299.97431 * 10 9 8 14 14 C 1.50699 * 109.47079 * 184.99989 * 13 10 9 15 15 H 1.07999 * 120.00223 * 0.02562 * 14 13 10 16 16 C 1.37874 * 119.99833 * 179.97438 * 14 13 10 17 17 N 1.31514 * 119.99849 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00016 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46920 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47206 * 120.00380 * 18 16 14 21 21 H 1.48507 * 109.47218 * 240.00522 * 18 16 14 22 22 C 1.36617 * 119.73760 * 179.69173 * 2 1 3 23 23 H 1.09004 * 109.47659 * 270.30176 * 1 2 3 24 24 H 1.09004 * 109.47517 * 30.30803 * 1 2 3 25 25 H 1.09003 * 109.47103 * 150.30406 * 1 2 3 26 26 H 1.07993 * 119.67037 * 359.97438 * 3 2 1 27 27 H 1.08002 * 120.11185 * 179.71813 * 4 3 2 28 28 H 1.07997 * 126.50061 * 179.97438 * 7 6 5 29 29 H 1.07999 * 125.03256 * 179.97438 * 8 7 6 30 30 H 1.08997 * 109.46922 * 179.97438 * 12 10 9 31 31 H 1.08999 * 109.47284 * 299.99879 * 12 10 9 32 32 H 1.09002 * 109.47122 * 59.99912 * 12 10 9 33 33 H 1.09000 * 109.47129 * 305.00112 * 13 10 9 34 34 H 1.08998 * 109.46747 * 64.99862 * 13 10 9 35 35 H 0.97002 * 119.99535 * 179.97438 * 17 16 14 36 36 H 1.08002 * 120.12126 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.2056 0.0000 4 6 3.5728 1.2280 -0.0060 5 6 4.2834 0.0318 -0.0059 6 6 3.5810 -1.1869 0.0010 7 6 4.5987 -2.2406 -0.0001 8 6 5.7946 -1.6310 -0.0066 9 7 5.6261 -0.2731 -0.0104 10 6 6.7124 0.7098 -0.0183 11 1 6.2923 1.7155 -0.0202 12 6 7.5695 0.5126 -1.2702 13 6 7.5794 0.5217 1.2283 14 6 8.6220 1.6084 1.2837 15 1 8.6619 2.3585 0.5077 16 6 9.5242 1.6457 2.3256 17 7 9.4752 0.7326 3.2708 18 14 10.8161 2.9932 2.3946 19 1 10.6591 3.8900 1.2214 20 1 10.6461 3.7783 3.6435 21 1 12.1697 2.3827 2.3740 22 6 2.1847 -1.1862 0.0064 23 1 -0.3634 0.0054 1.0277 24 1 -0.3634 0.8872 -0.5186 25 1 -0.3633 -0.8927 -0.5091 26 1 1.6458 2.1352 -0.0004 27 1 4.0994 2.1709 -0.0106 28 1 4.4205 -3.3058 0.0044 29 1 6.7486 -2.1373 -0.0086 30 1 8.3774 1.2442 -1.2763 31 1 7.9896 -0.4932 -1.2683 32 1 6.9517 0.6467 -2.1582 33 1 6.9524 0.5740 2.1183 34 1 8.0701 -0.4508 1.1862 35 1 10.1103 0.7586 4.0036 36 1 1.6423 -2.1202 0.0110 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695821669.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:12 Heat of formation + Delta-G solvation = 38.296347 kcal Electronic energy + Delta-G solvation = -16841.941543 eV Core-core repulsion = 14290.659718 eV Total energy + Delta-G solvation = -2551.281825 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.89224 -37.36137 -34.74963 -32.45194 -31.69354 -29.97933 -28.28581 -27.14974 -25.91582 -23.74377 -22.21911 -21.36748 -20.38640 -18.76609 -16.89464 -15.99753 -15.82310 -14.74635 -14.70818 -14.26040 -13.85175 -13.68680 -13.34601 -13.13357 -12.67529 -12.34423 -12.26714 -11.96178 -11.95000 -11.58382 -11.23316 -11.06169 -10.96516 -10.82365 -10.52013 -10.43383 -10.15975 -9.70780 -9.33023 -9.12536 -8.51449 -7.64244 -7.12228 -6.15126 -4.19860 1.52494 2.00049 3.22118 3.22665 3.30186 3.32926 3.46527 4.24800 4.34496 4.99670 5.15420 5.20925 5.29045 5.33580 5.44346 5.61346 5.72911 5.76996 5.79636 5.87313 5.97319 5.98283 6.13213 6.17337 6.35856 6.40417 6.46568 6.62410 6.69773 6.77992 6.99679 7.19615 7.27565 7.42315 7.48444 7.74918 7.79470 7.93591 8.19395 8.85185 9.45179 10.96012 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.034914 B = 0.005273 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.767363 B = 5308.875328 C = 5573.947213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.127 4.127 3 C -0.109 4.109 4 C -0.119 4.119 5 C 0.094 3.906 6 C -0.109 4.109 7 C -0.231 4.231 8 C 0.075 3.925 9 N -0.464 5.464 10 C 0.130 3.870 11 H 0.084 0.916 12 C -0.147 4.147 13 C 0.020 3.980 14 C -0.524 4.524 15 H 0.060 0.940 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.895 3.105 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.077 4.077 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.118 0.882 27 H 0.117 0.883 28 H 0.139 0.861 29 H 0.163 0.837 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.040 0.960 33 H 0.022 0.978 34 H 0.024 0.976 35 H 0.262 0.738 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.862 -2.347 -7.402 14.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.128 4.128 3 C -0.129 4.129 4 C -0.139 4.139 5 C -0.013 4.013 6 C -0.113 4.113 7 C -0.256 4.256 8 C -0.053 4.053 9 N -0.143 5.143 10 C 0.030 3.970 11 H 0.102 0.898 12 C -0.205 4.205 13 C -0.018 4.018 14 C -0.562 4.562 15 H 0.078 0.922 16 C -0.141 4.141 17 N -0.528 5.528 18 Si 0.722 3.278 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.095 4.095 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.136 0.864 27 H 0.135 0.865 28 H 0.157 0.843 29 H 0.180 0.820 30 H 0.101 0.899 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.041 0.959 34 H 0.042 0.958 35 H 0.072 0.928 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.472 -2.169 -7.246 13.741 hybrid contribution 0.935 0.677 0.279 1.187 sum -10.537 -1.492 -6.967 12.720 Atomic orbital electron populations 1.20654 0.91804 1.01927 1.01591 1.19241 0.95437 0.92984 1.05113 1.20547 0.92816 0.97171 1.02326 1.20050 0.93658 0.95262 1.04960 1.18337 0.83764 0.95169 1.04062 1.19193 0.92997 0.92670 1.06487 1.21499 0.90659 0.97661 1.15808 1.21773 0.99357 0.82756 1.01413 1.44684 1.04370 1.06073 1.59212 1.21831 0.86003 0.89987 0.99172 0.89783 1.22047 0.99950 1.03018 0.95442 1.19448 0.93771 0.98184 0.90358 1.21071 1.14526 1.11823 1.08817 0.92168 1.24998 0.97693 0.96027 0.95415 1.69978 1.36795 1.34154 1.11864 0.86490 0.81347 0.81801 0.78120 1.19612 1.20889 1.20870 1.20001 0.91735 0.97141 1.00657 0.91976 0.92188 0.92219 0.86420 0.86495 0.84285 0.81990 0.89923 0.92638 0.94082 0.95925 0.95802 0.92789 0.86799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.08 9.99 36.01 0.36 -0.72 16 2 C -0.13 -1.79 5.85 -104.99 -0.61 -2.41 16 3 C -0.11 -1.61 9.66 -39.54 -0.38 -1.99 16 4 C -0.12 -2.02 9.81 -39.43 -0.39 -2.40 16 5 C 0.09 1.78 6.81 -83.99 -0.57 1.21 16 6 C -0.11 -1.92 6.37 -105.13 -0.67 -2.59 16 7 C -0.23 -3.87 11.08 -37.67 -0.42 -4.29 16 8 C 0.07 1.33 10.24 -16.73 -0.17 1.16 16 9 N -0.46 -8.96 2.65 -107.35 -0.28 -9.24 16 10 C 0.13 2.64 2.95 -67.93 -0.20 2.44 16 11 H 0.08 1.70 7.34 -51.93 -0.38 1.32 16 12 C -0.15 -2.63 9.04 37.16 0.34 -2.29 16 13 C 0.02 0.49 4.43 -27.88 -0.12 0.37 16 14 C -0.52 -13.93 8.41 -34.44 -0.29 -14.22 16 15 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 18 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 22 C -0.08 -1.18 9.67 -39.65 -0.38 -1.56 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 25 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 26 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 27 H 0.12 1.87 7.56 -52.49 -0.40 1.47 16 28 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 29 H 0.16 2.59 8.06 -52.49 -0.42 2.17 16 30 H 0.08 1.52 6.95 -51.93 -0.36 1.15 16 31 H 0.05 0.96 7.89 -51.93 -0.41 0.55 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.02 0.62 8.04 -51.93 -0.42 0.20 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 302.54 15.07 4.56 4.56 Total: -1.00 -29.59 302.54 -8.89 -38.48 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -5.27 Total: 1.29 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: -3.61 Total: -25.70 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.45 Total: -34.45 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.59 -8.89 -38.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695821669.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.776 kcal (2) G-P(sol) polarization free energy of solvation -29.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds