Wall clock time and date at job start Mon Mar 30 2020 05:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38837 * 119.73079 * 2 1 4 4 C 1.37749 * 120.66086 * 180.29214 * 3 2 1 5 5 C 1.39129 * 119.78305 * 359.70025 * 4 3 2 6 6 C 1.40672 * 119.32989 * 359.97438 * 5 4 3 7 7 C 1.46487 * 106.03992 * 180.02562 * 6 5 4 8 8 C 1.34241 * 106.99389 * 0.02562 * 7 6 5 9 9 N 1.36827 * 109.93459 * 359.97438 * 8 7 6 10 10 C 1.46495 * 125.06390 * 180.02562 * 9 8 7 11 11 H 1.08999 * 109.46928 * 179.97438 * 10 9 8 12 12 C 1.52998 * 109.47150 * 59.97687 * 10 9 8 13 13 C 1.53006 * 109.47225 * 299.97431 * 10 9 8 14 14 C 1.50699 * 109.47079 * 184.99989 * 13 10 9 15 15 H 1.07999 * 120.00223 * 0.02562 * 14 13 10 16 16 C 1.37874 * 119.99833 * 179.97438 * 14 13 10 17 17 N 1.31514 * 119.99849 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00016 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46920 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47206 * 120.00380 * 18 16 14 21 21 H 1.48507 * 109.47218 * 240.00522 * 18 16 14 22 22 C 1.36617 * 119.73760 * 179.69173 * 2 1 3 23 23 H 1.09004 * 109.47659 * 270.30176 * 1 2 3 24 24 H 1.09004 * 109.47517 * 30.30803 * 1 2 3 25 25 H 1.09003 * 109.47103 * 150.30406 * 1 2 3 26 26 H 1.07993 * 119.67037 * 359.97438 * 3 2 1 27 27 H 1.08002 * 120.11185 * 179.71813 * 4 3 2 28 28 H 1.07997 * 126.50061 * 179.97438 * 7 6 5 29 29 H 1.07999 * 125.03256 * 179.97438 * 8 7 6 30 30 H 1.08997 * 109.46922 * 179.97438 * 12 10 9 31 31 H 1.08999 * 109.47284 * 299.99879 * 12 10 9 32 32 H 1.09002 * 109.47122 * 59.99912 * 12 10 9 33 33 H 1.09000 * 109.47129 * 305.00112 * 13 10 9 34 34 H 1.08998 * 109.46747 * 64.99862 * 13 10 9 35 35 H 0.97002 * 119.99535 * 179.97438 * 17 16 14 36 36 H 1.08002 * 120.12126 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.2056 0.0000 4 6 3.5728 1.2280 -0.0060 5 6 4.2834 0.0318 -0.0059 6 6 3.5810 -1.1869 0.0010 7 6 4.5987 -2.2406 -0.0001 8 6 5.7946 -1.6310 -0.0066 9 7 5.6261 -0.2731 -0.0104 10 6 6.7124 0.7098 -0.0183 11 1 6.2923 1.7155 -0.0202 12 6 7.5695 0.5126 -1.2702 13 6 7.5794 0.5217 1.2283 14 6 8.6220 1.6084 1.2837 15 1 8.6619 2.3585 0.5077 16 6 9.5242 1.6457 2.3256 17 7 9.4752 0.7326 3.2708 18 14 10.8161 2.9932 2.3946 19 1 10.6591 3.8900 1.2214 20 1 10.6461 3.7783 3.6435 21 1 12.1697 2.3827 2.3740 22 6 2.1847 -1.1862 0.0064 23 1 -0.3634 0.0054 1.0277 24 1 -0.3634 0.8872 -0.5186 25 1 -0.3633 -0.8927 -0.5091 26 1 1.6458 2.1352 -0.0004 27 1 4.0994 2.1709 -0.0106 28 1 4.4205 -3.3058 0.0044 29 1 6.7486 -2.1373 -0.0086 30 1 8.3774 1.2442 -1.2763 31 1 7.9896 -0.4932 -1.2683 32 1 6.9517 0.6467 -2.1582 33 1 6.9524 0.5740 2.1183 34 1 8.0701 -0.4508 1.1862 35 1 10.1103 0.7586 4.0036 36 1 1.6423 -2.1202 0.0110 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695821669.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:11 Heat of formation + Delta-G solvation = 24.424896 kcal Electronic energy + Delta-G solvation = -16842.543054 eV Core-core repulsion = 14290.659718 eV Total energy + Delta-G solvation = -2551.883336 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.22042 -38.63250 -36.41621 -34.36121 -32.87728 -31.33197 -29.65532 -28.93029 -27.04662 -25.58531 -23.46907 -22.96932 -21.61490 -20.19426 -18.76724 -17.63950 -17.12887 -16.61824 -15.85380 -15.71519 -15.30167 -15.09757 -14.53146 -14.43642 -14.18571 -13.88671 -13.62904 -13.48533 -13.11903 -12.88447 -12.83701 -12.77968 -12.40264 -12.31492 -12.13464 -11.86487 -11.65417 -11.39276 -11.33762 -10.64197 -10.47070 -8.92664 -8.44533 -8.25074 -6.38373 0.27580 0.76493 1.39075 1.39943 1.52562 1.88278 2.04698 2.39298 3.01074 3.08586 3.75980 3.86254 3.98883 4.16593 4.19697 4.25457 4.40506 4.51213 4.61663 4.65839 4.83312 4.91608 4.94972 4.97537 4.99307 5.08209 5.20103 5.24700 5.31135 5.34023 5.44575 5.55557 5.69806 5.83580 5.95997 6.05760 6.07444 6.45102 6.52315 6.76689 7.31700 8.86286 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.034914 B = 0.005273 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.767363 B = 5308.875328 C = 5573.947213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.125 4.125 3 C -0.103 4.103 4 C -0.144 4.144 5 C 0.063 3.937 6 C -0.131 4.131 7 C -0.224 4.224 8 C 0.048 3.952 9 N -0.477 5.477 10 C 0.142 3.858 11 H 0.081 0.919 12 C -0.137 4.137 13 C 0.033 3.967 14 C -0.535 4.535 15 H 0.071 0.929 16 C 0.004 3.996 17 N -0.932 5.932 18 Si 0.967 3.033 19 H -0.257 1.257 20 H -0.282 1.282 21 H -0.278 1.278 22 C -0.084 4.084 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.147 0.853 27 H 0.117 0.883 28 H 0.167 0.833 29 H 0.170 0.830 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.060 0.940 33 H -0.020 1.020 34 H 0.002 0.998 35 H 0.264 0.736 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.322 -1.757 -8.488 15.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.126 4.126 3 C -0.122 4.122 4 C -0.164 4.164 5 C -0.044 4.044 6 C -0.136 4.136 7 C -0.248 4.248 8 C -0.079 4.079 9 N -0.158 5.158 10 C 0.041 3.959 11 H 0.099 0.901 12 C -0.194 4.194 13 C -0.005 4.005 14 C -0.573 4.573 15 H 0.090 0.910 16 C -0.195 4.195 17 N -0.572 5.572 18 Si 0.791 3.209 19 H -0.180 1.180 20 H -0.208 1.208 21 H -0.204 1.204 22 C -0.102 4.102 23 H 0.091 0.909 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.164 0.836 27 H 0.135 0.865 28 H 0.184 0.816 29 H 0.187 0.813 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.079 0.921 33 H -0.002 1.002 34 H 0.021 0.979 35 H 0.073 0.927 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.952 -1.585 -8.352 15.493 hybrid contribution 1.230 0.465 0.638 1.461 sum -11.723 -1.120 -7.714 14.078 Atomic orbital electron populations 1.20717 0.88747 1.03518 1.02721 1.19737 0.97638 0.92242 1.03013 1.20969 0.92041 0.98893 1.00337 1.20292 0.94870 0.94843 1.06438 1.18777 0.83683 0.96538 1.05395 1.19574 0.94287 0.92429 1.07274 1.21872 0.90008 0.98865 1.14069 1.22069 1.00373 0.82511 1.02906 1.44585 1.04369 1.06265 1.60619 1.21474 0.86132 0.90406 0.97911 0.90108 1.21936 0.99602 1.02958 0.94926 1.19220 0.93459 0.96792 0.91028 1.21486 1.14632 1.12189 1.08969 0.91040 1.25955 1.00086 0.98416 0.95005 1.70121 1.38018 1.36327 1.12736 0.85368 0.78304 0.78776 0.78439 1.18049 1.20795 1.20359 1.20374 0.90890 0.98859 1.00084 0.90918 0.90604 0.90754 0.83557 0.86546 0.81586 0.81316 0.90359 0.92454 0.92065 1.00159 0.97930 0.92706 0.84337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.72 9.99 71.24 0.71 -1.01 16 2 C -0.13 -3.21 5.85 -20.10 -0.12 -3.33 16 3 C -0.10 -2.85 9.66 22.30 0.22 -2.63 16 4 C -0.14 -4.87 9.81 22.37 0.22 -4.65 16 5 C 0.06 2.39 6.81 39.03 0.27 2.66 16 6 C -0.13 -4.56 6.37 -20.20 -0.13 -4.69 16 7 C -0.22 -7.39 11.08 23.51 0.26 -7.13 16 8 C 0.05 1.75 10.24 83.00 0.85 2.60 16 9 N -0.48 -18.97 2.65 -493.54 -1.31 -20.28 16 10 C 0.14 5.93 2.95 44.99 0.13 6.06 16 11 H 0.08 3.37 7.34 -2.39 -0.02 3.35 16 12 C -0.14 -4.88 9.04 71.98 0.65 -4.23 16 13 C 0.03 1.70 4.43 29.85 0.13 1.83 16 14 C -0.53 -28.96 8.41 25.60 0.22 -28.75 16 15 H 0.07 3.63 7.06 -2.91 -0.02 3.61 16 16 C 0.00 0.21 5.46 84.65 0.46 0.67 16 17 N -0.93 -55.94 13.29 21.45 0.28 -55.66 16 18 Si 0.97 42.93 29.54 68.60 2.03 44.96 16 19 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 21 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 22 C -0.08 -2.40 9.67 22.23 0.22 -2.18 16 23 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 24 H 0.08 1.08 8.08 -2.39 -0.02 1.06 16 25 H 0.07 1.08 8.08 -2.39 -0.02 1.06 16 26 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 27 H 0.12 3.79 7.56 -2.91 -0.02 3.77 16 28 H 0.17 4.37 8.06 -2.91 -0.02 4.34 16 29 H 0.17 5.63 8.06 -2.91 -0.02 5.61 16 30 H 0.08 2.84 6.95 -2.39 -0.02 2.82 16 31 H 0.06 2.00 7.89 -2.39 -0.02 1.98 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 34 H 0.00 0.13 8.04 -2.39 -0.02 0.11 16 35 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 36 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -65.06 302.54 6.13 -58.93 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 1.05 Total: 16.84 kcal Atomic # 6 Polarization: -48.87 SS G_CDS: 4.09 Total: -44.78 kcal Atomic # 7 Polarization: -74.92 SS G_CDS: -1.02 Total: -75.94 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -65.06 6.13 -58.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695821669.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.354 kcal (2) G-P(sol) polarization free energy of solvation -65.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds