Wall clock time and date at job start Mon Mar 30 2020 05:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38837 * 119.73272 * 2 1 4 4 C 1.37748 * 120.66139 * 179.97438 * 3 2 1 5 5 C 1.39125 * 119.78247 * 0.02562 * 4 3 2 6 6 C 1.40668 * 119.33279 * 359.97438 * 5 4 3 7 7 C 1.46491 * 106.03960 * 179.74453 * 6 5 4 8 8 C 1.34239 * 106.99536 * 0.39708 * 7 6 5 9 9 N 1.36835 * 109.93059 * 359.59412 * 8 7 6 10 10 C 1.46502 * 125.06342 * 180.27069 * 9 8 7 11 11 H 1.08995 * 109.47031 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.46732 * 300.01951 * 10 9 8 13 13 C 1.52993 * 109.47261 * 60.01839 * 10 9 8 14 14 C 1.50701 * 109.47074 * 174.99885 * 13 10 9 15 15 H 1.08001 * 119.99903 * 0.02562 * 14 13 10 16 16 C 1.37882 * 120.00127 * 180.02562 * 14 13 10 17 17 N 1.31515 * 119.99810 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99960 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47090 * 89.99717 * 18 16 14 20 20 H 1.48493 * 109.47297 * 209.99705 * 18 16 14 21 21 H 1.48501 * 109.47110 * 329.99915 * 18 16 14 22 22 C 1.36626 * 119.73669 * 179.97438 * 2 1 3 23 23 H 1.08996 * 109.46891 * 90.00172 * 1 2 3 24 24 H 1.08997 * 109.46790 * 209.99486 * 1 2 3 25 25 H 1.09003 * 109.47112 * 329.99922 * 1 2 3 26 26 H 1.07992 * 119.67056 * 359.97438 * 3 2 1 27 27 H 1.08008 * 120.10715 * 179.97438 * 4 3 2 28 28 H 1.07993 * 126.50256 * 180.28156 * 7 6 5 29 29 H 1.08002 * 125.03689 * 179.86393 * 8 7 6 30 30 H 1.09002 * 109.46978 * 179.97438 * 12 10 9 31 31 H 1.09001 * 109.47529 * 300.00622 * 12 10 9 32 32 H 1.09010 * 109.47109 * 60.00249 * 12 10 9 33 33 H 1.09001 * 109.47783 * 295.00415 * 13 10 9 34 34 H 1.09003 * 109.46875 * 55.00651 * 13 10 9 35 35 H 0.96993 * 119.99843 * 179.97438 * 17 16 14 36 36 H 1.07998 * 120.11907 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2056 0.0000 4 6 3.5729 1.2279 0.0005 5 6 4.2834 0.0318 0.0005 6 6 3.5810 -1.1870 0.0005 7 6 4.5987 -2.2407 -0.0057 8 6 5.7947 -1.6311 -0.0001 9 7 5.6261 -0.2732 0.0001 10 6 6.7124 0.7098 -0.0001 11 1 6.2924 1.7155 0.0007 12 6 7.5752 0.5166 1.2486 13 6 7.5738 0.5177 -1.2498 14 6 8.6161 1.6043 -1.3135 15 1 8.6599 2.3564 -0.5396 16 6 9.5136 1.6383 -2.3596 17 7 10.4235 2.5863 -2.4148 18 14 9.4373 0.3378 -3.6984 19 1 8.5345 0.7976 -4.7841 20 1 10.7982 0.1129 -4.2482 21 1 8.9183 -0.9308 -3.1271 22 6 2.1847 -1.1863 0.0005 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5137 25 1 -0.3633 0.8900 0.5139 26 1 1.6459 2.1352 -0.0004 27 1 4.0995 2.1709 0.0001 28 1 4.4206 -3.3058 -0.0117 29 1 6.7487 -2.1374 -0.0005 30 1 8.3837 1.2476 1.2482 31 1 6.9616 0.6533 2.1390 32 1 7.9953 -0.4893 1.2479 33 1 8.0647 -0.4546 -1.2070 34 1 6.9427 0.5673 -2.1372 35 1 11.0551 2.6100 -3.1505 36 1 1.6424 -2.1203 0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695821671.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:14 Heat of formation + Delta-G solvation = 42.069886 kcal Electronic energy + Delta-G solvation = -16904.334328 eV Core-core repulsion = 14353.216137 eV Total energy + Delta-G solvation = -2551.118192 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.99890 -37.45737 -34.86204 -32.44902 -31.77400 -30.15508 -28.46254 -27.64088 -25.98685 -23.55693 -22.29238 -21.22888 -20.47828 -18.79530 -17.32293 -16.11978 -15.95456 -14.78533 -14.66970 -14.27946 -13.87944 -13.80389 -13.39967 -13.29792 -12.77028 -12.60574 -12.34129 -12.18355 -12.01644 -11.68241 -11.32368 -11.21671 -11.01781 -10.87302 -10.53295 -10.26266 -10.04551 -9.93869 -9.40933 -9.24274 -8.68300 -7.73939 -7.22482 -6.19068 -4.19705 1.44039 1.91722 3.11289 3.22459 3.30398 3.33182 3.34277 4.16748 4.32802 4.91534 5.08430 5.13170 5.19299 5.25510 5.36640 5.52112 5.67708 5.68918 5.70058 5.79277 5.89584 5.91590 6.03925 6.08300 6.26629 6.31539 6.37873 6.46050 6.68389 6.70558 6.92158 6.94154 7.04027 7.12787 7.21374 7.51828 7.67694 7.83495 8.32909 8.81798 9.41721 10.93297 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.031348 B = 0.005697 C = 0.005617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.986273 B = 4913.488065 C = 4984.096916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.125 4.125 3 C -0.108 4.108 4 C -0.119 4.119 5 C 0.095 3.905 6 C -0.109 4.109 7 C -0.228 4.228 8 C 0.069 3.931 9 N -0.467 5.467 10 C 0.141 3.859 11 H 0.090 0.910 12 C -0.148 4.148 13 C -0.016 4.016 14 C -0.524 4.524 15 H 0.077 0.923 16 C 0.074 3.926 17 N -0.896 5.896 18 Si 0.877 3.123 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.266 1.266 22 C -0.077 4.077 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.140 0.860 29 H 0.162 0.838 30 H 0.087 0.913 31 H 0.043 0.957 32 H 0.054 0.946 33 H 0.023 0.977 34 H 0.018 0.982 35 H 0.266 0.734 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.412 -6.752 5.515 16.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.126 4.126 3 C -0.127 4.127 4 C -0.139 4.139 5 C -0.013 4.013 6 C -0.114 4.114 7 C -0.253 4.253 8 C -0.058 4.058 9 N -0.148 5.148 10 C 0.040 3.960 11 H 0.108 0.892 12 C -0.206 4.206 13 C -0.054 4.054 14 C -0.562 4.562 15 H 0.095 0.905 16 C -0.129 4.129 17 N -0.534 5.534 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.190 1.190 22 C -0.095 4.095 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.137 0.863 27 H 0.137 0.863 28 H 0.158 0.842 29 H 0.180 0.820 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.041 0.959 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.948 -6.445 5.414 16.291 hybrid contribution 0.268 -0.591 -0.882 1.095 sum -13.680 -7.036 4.532 16.037 Atomic orbital electron populations 1.20662 0.91734 1.02009 1.01635 1.19264 0.95500 0.92968 1.04879 1.20574 0.92821 0.97233 1.02066 1.20078 0.93687 0.95316 1.04853 1.18332 0.83649 0.95206 1.04077 1.19192 0.93026 0.92627 1.06550 1.21513 0.90651 0.97706 1.15463 1.21772 0.99370 0.82777 1.01902 1.44702 1.04453 1.06033 1.59563 1.21586 0.85732 0.90325 0.98346 0.89182 1.22059 1.00087 1.03147 0.95283 1.19930 0.95050 0.98526 0.91936 1.20899 1.13485 1.11511 1.10300 0.90482 1.24945 0.94871 0.95414 0.97668 1.69886 1.18450 1.32850 1.32238 0.86817 0.77453 0.82815 0.82481 1.20163 1.21138 1.19048 1.20006 0.91699 0.97183 1.00645 0.91938 0.92179 0.92111 0.86302 0.86325 0.84237 0.82029 0.89414 0.93809 0.92704 0.95885 0.96378 0.92460 0.86756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.04 9.99 36.01 0.36 -0.68 16 2 C -0.12 -1.69 5.85 -104.98 -0.61 -2.31 16 3 C -0.11 -1.52 9.66 -39.54 -0.38 -1.90 16 4 C -0.12 -1.94 9.81 -39.43 -0.39 -2.33 16 5 C 0.09 1.71 6.81 -83.99 -0.57 1.14 16 6 C -0.11 -1.84 6.37 -105.14 -0.67 -2.51 16 7 C -0.23 -3.60 11.08 -37.67 -0.42 -4.02 16 8 C 0.07 1.16 10.25 -16.73 -0.17 0.99 16 9 N -0.47 -8.58 2.65 -107.35 -0.28 -8.87 16 10 C 0.14 2.74 2.95 -67.93 -0.20 2.54 16 11 H 0.09 1.77 7.34 -51.93 -0.38 1.39 16 12 C -0.15 -2.60 9.04 37.16 0.34 -2.27 16 13 C -0.02 -0.38 3.50 -27.89 -0.10 -0.48 16 14 C -0.52 -14.05 8.96 -34.44 -0.31 -14.36 16 15 H 0.08 2.18 7.30 -52.49 -0.38 1.80 16 16 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 17 N -0.90 -26.63 13.96 55.43 0.77 -25.85 16 18 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 21 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 22 C -0.08 -1.12 9.67 -39.64 -0.38 -1.50 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.53 8.07 -51.93 -0.42 0.11 16 25 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 26 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 27 H 0.12 1.83 7.57 -52.48 -0.40 1.43 16 28 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 29 H 0.16 2.37 8.06 -52.49 -0.42 1.95 16 30 H 0.09 1.65 6.95 -51.93 -0.36 1.29 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.91 7.89 -51.92 -0.41 0.50 16 33 H 0.02 0.53 7.10 -51.93 -0.37 0.16 16 34 H 0.02 0.43 7.57 -51.93 -0.39 0.04 16 35 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 LS Contribution 298.94 15.07 4.50 4.50 Total: -1.00 -29.79 298.94 -8.52 -38.30 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -5.24 Total: 1.03 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: -3.61 Total: -25.72 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.49 Total: -34.72 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.79 -8.52 -38.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695821671.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.372 kcal (2) G-P(sol) polarization free energy of solvation -29.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds