Wall clock time and date at job start Mon Mar 30 2020 05:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38837 * 119.73272 * 2 1 4 4 C 1.37748 * 120.66139 * 179.97438 * 3 2 1 5 5 C 1.39125 * 119.78247 * 0.02562 * 4 3 2 6 6 C 1.40668 * 119.33279 * 359.97438 * 5 4 3 7 7 C 1.46491 * 106.03960 * 179.74453 * 6 5 4 8 8 C 1.34239 * 106.99536 * 0.39708 * 7 6 5 9 9 N 1.36835 * 109.93059 * 359.59412 * 8 7 6 10 10 C 1.46502 * 125.06342 * 180.27069 * 9 8 7 11 11 H 1.08995 * 109.47031 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.46732 * 300.01951 * 10 9 8 13 13 C 1.52993 * 109.47261 * 60.01839 * 10 9 8 14 14 C 1.50701 * 109.47074 * 174.99885 * 13 10 9 15 15 H 1.08001 * 119.99903 * 0.02562 * 14 13 10 16 16 C 1.37882 * 120.00127 * 180.02562 * 14 13 10 17 17 N 1.31515 * 119.99810 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99960 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47090 * 89.99717 * 18 16 14 20 20 H 1.48493 * 109.47297 * 209.99705 * 18 16 14 21 21 H 1.48501 * 109.47110 * 329.99915 * 18 16 14 22 22 C 1.36626 * 119.73669 * 179.97438 * 2 1 3 23 23 H 1.08996 * 109.46891 * 90.00172 * 1 2 3 24 24 H 1.08997 * 109.46790 * 209.99486 * 1 2 3 25 25 H 1.09003 * 109.47112 * 329.99922 * 1 2 3 26 26 H 1.07992 * 119.67056 * 359.97438 * 3 2 1 27 27 H 1.08008 * 120.10715 * 179.97438 * 4 3 2 28 28 H 1.07993 * 126.50256 * 180.28156 * 7 6 5 29 29 H 1.08002 * 125.03689 * 179.86393 * 8 7 6 30 30 H 1.09002 * 109.46978 * 179.97438 * 12 10 9 31 31 H 1.09001 * 109.47529 * 300.00622 * 12 10 9 32 32 H 1.09010 * 109.47109 * 60.00249 * 12 10 9 33 33 H 1.09001 * 109.47783 * 295.00415 * 13 10 9 34 34 H 1.09003 * 109.46875 * 55.00651 * 13 10 9 35 35 H 0.96993 * 119.99843 * 179.97438 * 17 16 14 36 36 H 1.07998 * 120.11907 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2056 0.0000 4 6 3.5729 1.2279 0.0005 5 6 4.2834 0.0318 0.0005 6 6 3.5810 -1.1870 0.0005 7 6 4.5987 -2.2407 -0.0057 8 6 5.7947 -1.6311 -0.0001 9 7 5.6261 -0.2732 0.0001 10 6 6.7124 0.7098 -0.0001 11 1 6.2924 1.7155 0.0007 12 6 7.5752 0.5166 1.2486 13 6 7.5738 0.5177 -1.2498 14 6 8.6161 1.6043 -1.3135 15 1 8.6599 2.3564 -0.5396 16 6 9.5136 1.6383 -2.3596 17 7 10.4235 2.5863 -2.4148 18 14 9.4373 0.3378 -3.6984 19 1 8.5345 0.7976 -4.7841 20 1 10.7982 0.1129 -4.2482 21 1 8.9183 -0.9308 -3.1271 22 6 2.1847 -1.1863 0.0005 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5137 25 1 -0.3633 0.8900 0.5139 26 1 1.6459 2.1352 -0.0004 27 1 4.0995 2.1709 0.0001 28 1 4.4206 -3.3058 -0.0117 29 1 6.7487 -2.1374 -0.0005 30 1 8.3837 1.2476 1.2482 31 1 6.9616 0.6533 2.1390 32 1 7.9953 -0.4893 1.2479 33 1 8.0647 -0.4546 -1.2070 34 1 6.9427 0.5673 -2.1372 35 1 11.0551 2.6100 -3.1505 36 1 1.6424 -2.1203 0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695821671.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:14 Heat of formation + Delta-G solvation = 27.609096 kcal Electronic energy + Delta-G solvation = -16904.961395 eV Core-core repulsion = 14353.216137 eV Total energy + Delta-G solvation = -2551.745259 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.24179 -38.66094 -36.44566 -34.40288 -32.89748 -31.48044 -29.84388 -29.22186 -27.05051 -25.29885 -23.46406 -22.80761 -21.63105 -20.15769 -19.23422 -17.66428 -17.14939 -16.48935 -15.86155 -15.74223 -15.44851 -15.07310 -14.69297 -14.54824 -14.26330 -13.94358 -13.76805 -13.50806 -13.15867 -13.03198 -12.84432 -12.73725 -12.36714 -12.22678 -12.05707 -11.77446 -11.68410 -11.54641 -11.43041 -10.83648 -10.49289 -8.93726 -8.44992 -8.34966 -6.39960 0.26966 0.75202 1.30465 1.32530 1.42612 1.88150 2.01103 2.29255 2.99548 3.00427 3.73047 3.83182 3.97860 4.16050 4.16334 4.19305 4.34434 4.50528 4.61008 4.64798 4.78919 4.85666 4.93421 4.94029 4.96571 5.07049 5.11225 5.17527 5.24241 5.30677 5.30849 5.50277 5.55525 5.83281 5.95142 6.05354 6.16017 6.43572 6.49666 6.66536 7.24597 8.80242 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.031348 B = 0.005697 C = 0.005617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.986273 B = 4913.488065 C = 4984.096916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.125 4.125 3 C -0.104 4.104 4 C -0.145 4.145 5 C 0.064 3.936 6 C -0.129 4.129 7 C -0.221 4.221 8 C 0.047 3.953 9 N -0.479 5.479 10 C 0.150 3.850 11 H 0.078 0.922 12 C -0.139 4.139 13 C -0.007 4.007 14 C -0.524 4.524 15 H 0.048 0.952 16 C 0.017 3.983 17 N -0.942 5.942 18 Si 0.939 3.061 19 H -0.274 1.274 20 H -0.280 1.280 21 H -0.250 1.250 22 C -0.083 4.083 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.144 0.856 27 H 0.114 0.886 28 H 0.168 0.832 29 H 0.177 0.823 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.029 0.971 34 H 0.006 0.994 35 H 0.268 0.732 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.720 -8.698 5.452 19.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.126 4.126 3 C -0.123 4.123 4 C -0.165 4.165 5 C -0.042 4.042 6 C -0.134 4.134 7 C -0.245 4.245 8 C -0.079 4.079 9 N -0.161 5.161 10 C 0.048 3.952 11 H 0.096 0.904 12 C -0.196 4.196 13 C -0.045 4.045 14 C -0.562 4.562 15 H 0.066 0.934 16 C -0.181 4.181 17 N -0.582 5.582 18 Si 0.763 3.237 19 H -0.200 1.200 20 H -0.205 1.205 21 H -0.173 1.173 22 C -0.101 4.101 23 H 0.091 0.909 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.162 0.838 27 H 0.132 0.868 28 H 0.185 0.815 29 H 0.194 0.806 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.047 0.953 34 H 0.025 0.975 35 H 0.077 0.923 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.282 -8.412 5.365 19.095 hybrid contribution 0.852 0.079 -0.805 1.175 sum -15.430 -8.332 4.560 18.119 Atomic orbital electron populations 1.20721 0.88866 1.03473 1.02728 1.19732 0.97581 0.92278 1.02980 1.20959 0.92101 0.98870 1.00364 1.20287 0.94860 0.94942 1.06446 1.18726 0.83689 0.96414 1.05412 1.19578 0.94234 0.92468 1.07139 1.21890 0.89957 0.98858 1.13810 1.22156 1.00614 0.82194 1.02913 1.44559 1.04189 1.06305 1.61022 1.21228 0.86031 0.90518 0.97389 0.90351 1.21942 0.99422 1.03108 0.95159 1.19770 0.94291 0.97162 0.93312 1.21160 1.14148 1.11685 1.09215 0.93379 1.25789 0.94608 0.97554 1.00181 1.70017 1.19692 1.35028 1.33428 0.85829 0.77676 0.80708 0.79486 1.19998 1.20517 1.17345 1.20374 0.90996 0.98762 0.99989 0.90878 0.90728 0.90763 0.83814 0.86773 0.81464 0.80566 0.91296 0.92154 0.91635 0.95260 0.97520 0.92296 0.84289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.63 9.99 71.24 0.71 -0.92 16 2 C -0.12 -3.02 5.85 -20.10 -0.12 -3.14 16 3 C -0.10 -2.75 9.66 22.30 0.22 -2.53 16 4 C -0.14 -4.69 9.81 22.37 0.22 -4.47 16 5 C 0.06 2.28 6.81 39.03 0.27 2.55 16 6 C -0.13 -4.15 6.37 -20.20 -0.13 -4.28 16 7 C -0.22 -6.49 11.08 23.51 0.26 -6.23 16 8 C 0.05 1.51 10.25 83.00 0.85 2.36 16 9 N -0.48 -17.43 2.65 -493.54 -1.31 -18.74 16 10 C 0.15 5.91 2.95 44.99 0.13 6.04 16 11 H 0.08 3.21 7.34 -2.39 -0.02 3.20 16 12 C -0.14 -4.89 9.04 71.98 0.65 -4.24 16 13 C -0.01 -0.34 3.50 29.85 0.10 -0.23 16 14 C -0.52 -28.82 8.96 25.60 0.23 -28.59 16 15 H 0.05 2.86 7.30 -2.91 -0.02 2.83 16 16 C 0.02 0.96 5.47 84.66 0.46 1.42 16 17 N -0.94 -57.32 13.96 21.45 0.30 -57.02 16 18 Si 0.94 43.81 27.47 68.60 1.88 45.70 16 19 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 21 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 22 C -0.08 -2.20 9.67 22.23 0.22 -1.99 16 23 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.07 1.01 8.07 -2.39 -0.02 0.99 16 25 H 0.07 1.02 8.08 -2.39 -0.02 1.00 16 26 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 27 H 0.11 3.64 7.57 -2.91 -0.02 3.61 16 28 H 0.17 3.80 8.06 -2.91 -0.02 3.78 16 29 H 0.18 4.88 8.06 -2.91 -0.02 4.85 16 30 H 0.07 2.67 6.95 -2.39 -0.02 2.65 16 31 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.06 2.14 7.89 -2.38 -0.02 2.12 16 33 H 0.03 1.31 7.10 -2.39 -0.02 1.30 16 34 H 0.01 0.31 7.57 -2.39 -0.02 0.30 16 35 H 0.27 15.28 8.31 -92.71 -0.77 14.50 16 36 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -64.58 298.94 5.94 -58.64 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.99 Total: 15.67 kcal Atomic # 6 Polarization: -48.31 SS G_CDS: 4.07 Total: -44.24 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -1.01 Total: -75.76 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.70 kcal Total: -64.58 5.94 -58.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695821671.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.246 kcal (2) G-P(sol) polarization free energy of solvation -64.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds