Wall clock time and date at job start Mon Mar 30 2020 05:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86794 * 119.99686 * 2 1 4 4 H 1.48503 * 109.47118 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47210 * 300.00159 * 3 2 1 6 6 H 1.48498 * 109.47448 * 60.00138 * 3 2 1 7 7 C 1.39942 * 120.00232 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00283 * 197.85361 * 7 2 1 9 9 C 1.41399 * 119.99889 * 17.85603 * 7 2 1 10 10 C 1.40720 * 120.24403 * 204.37768 * 9 7 2 11 11 C 1.37616 * 119.74751 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24846 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.75039 * 180.02562 * 12 11 10 14 14 N 1.46900 * 109.47194 * 90.00328 * 13 12 11 15 15 C 1.46888 * 110.99960 * 179.97438 * 14 13 12 16 16 H 1.09005 * 110.34829 * 327.28517 * 15 14 13 17 17 C 1.51104 * 110.39007 * 89.69639 * 15 14 13 18 18 C 1.30530 * 111.10070 * 102.37133 * 17 15 14 19 19 C 1.51160 * 111.12162 * 0.03741 * 18 17 15 20 20 C 1.54636 * 104.69664 * 16.38156 * 19 18 17 21 21 C 1.38637 * 120.49843 * 0.30143 * 12 11 10 22 22 C 1.37617 * 120.24827 * 359.43894 * 21 12 11 23 23 H 0.96994 * 120.00468 * 359.97438 * 1 2 3 24 24 H 1.08000 * 120.12599 * 0.02562 * 10 9 7 25 25 H 1.07993 * 119.87959 * 180.02562 * 11 10 9 26 26 H 1.08997 * 109.47184 * 330.00291 * 13 12 11 27 27 H 1.09003 * 109.46902 * 210.00516 * 13 12 11 28 28 H 1.00893 * 110.99647 * 303.95536 * 14 13 12 29 29 H 1.08001 * 124.44785 * 282.39940 * 17 15 14 30 30 H 1.08000 * 124.44296 * 180.02562 * 18 17 15 31 31 H 1.09007 * 110.37984 * 257.58807 * 19 18 17 32 32 H 1.08999 * 110.42342 * 135.19769 * 19 18 17 33 33 H 1.08995 * 111.03480 * 217.36317 * 20 19 18 34 34 H 1.09000 * 111.03587 * 93.46303 * 20 19 18 35 35 H 1.08002 * 119.87772 * 179.70520 * 21 12 11 36 36 H 1.08002 * 120.13170 * 180.27463 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 3.7022 1.3465 -0.0006 5 1 1.8833 2.3964 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0489 -1.2346 0.2862 9 6 1.3521 -2.4068 -0.3766 10 6 1.8260 -3.6499 0.0820 11 6 1.1801 -4.8065 -0.2907 12 6 0.0663 -4.7501 -1.1143 13 6 -0.6327 -6.0236 -1.5151 14 7 -1.6780 -6.3386 -0.5322 15 6 -2.3826 -7.5764 -0.8915 16 1 -2.4320 -7.6835 -1.9751 17 6 -1.6959 -8.7717 -0.2727 18 6 -2.3434 -9.1931 0.7794 19 6 -3.5709 -8.3495 1.0377 20 6 -3.8048 -7.5823 -0.2844 21 6 -0.4059 -3.5314 -1.5767 22 6 0.2210 -2.3617 -1.2124 23 1 -0.4850 0.8400 0.0004 24 1 2.6932 -3.6961 0.7240 25 1 1.5417 -5.7617 0.0603 26 1 0.0899 -6.8389 -1.5509 27 1 -1.0852 -5.8957 -2.4984 28 1 -1.2930 -6.3985 0.3985 29 1 -0.7883 -9.2184 -0.6511 30 1 -2.0418 -10.0343 1.3859 31 1 -3.3868 -7.6514 1.8544 32 1 -4.4274 -8.9840 1.2652 33 1 -4.1521 -6.5673 -0.0915 34 1 -4.5031 -8.1167 -0.9286 35 1 -1.2716 -3.4995 -2.2217 36 1 -0.1511 -1.4130 -1.5701 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698203770.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:23 Heat of formation + Delta-G solvation = 28.158602 kcal Electronic energy + Delta-G solvation = -16438.173417 eV Core-core repulsion = 13886.451986 eV Total energy + Delta-G solvation = -2551.721430 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.99646 -37.52966 -34.51341 -33.12445 -30.06804 -29.22028 -28.91188 -27.17735 -25.30512 -22.95169 -20.93053 -20.36357 -19.81706 -18.78725 -17.26665 -16.38819 -15.37499 -15.27603 -14.62269 -14.11061 -13.78782 -13.43153 -13.12828 -12.60297 -12.17211 -11.93803 -11.88417 -11.72265 -11.53849 -11.39971 -11.18509 -11.04595 -10.91844 -10.78733 -10.41388 -10.32755 -9.55753 -9.35208 -9.16864 -9.08190 -7.94385 -7.40739 -7.26874 -6.73271 -4.32236 2.20776 2.76941 3.08515 3.11417 3.14082 3.19977 3.95044 4.49897 4.67573 4.71473 4.95258 5.26549 5.29661 5.48743 5.71917 5.75236 5.82448 5.89577 5.95308 6.01050 6.16838 6.26896 6.35019 6.39732 6.46470 6.48905 6.84226 6.99178 7.10103 7.33304 7.39668 7.49322 7.65026 7.78982 7.94100 8.09117 8.18892 8.33535 8.68099 8.92684 9.01355 10.21065 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.046164 B = 0.004339 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.387789 B = 6450.905336 C = 6617.432477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.112 3.888 10 C -0.228 4.228 11 C -0.085 4.085 12 C -0.213 4.213 13 C 0.124 3.876 14 N -0.669 5.669 15 C 0.103 3.897 16 H 0.077 0.923 17 C -0.199 4.199 18 C -0.157 4.157 19 C -0.103 4.103 20 C -0.117 4.117 21 C -0.079 4.079 22 C -0.168 4.168 23 H 0.280 0.720 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.018 0.982 27 H 0.061 0.939 28 H 0.341 0.659 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.713 -10.886 -0.523 11.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.109 3.891 10 C -0.247 4.247 11 C -0.104 4.104 12 C -0.215 4.215 13 C -0.003 4.003 14 N -0.298 5.298 15 C -0.007 4.007 16 H 0.095 0.905 17 C -0.218 4.218 18 C -0.177 4.177 19 C -0.140 4.140 20 C -0.155 4.155 21 C -0.098 4.098 22 C -0.187 4.187 23 H 0.091 0.909 24 H 0.108 0.892 25 H 0.100 0.900 26 H 0.036 0.964 27 H 0.080 0.920 28 H 0.160 0.840 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.390 -10.283 -0.827 11.639 hybrid contribution 1.123 -0.003 0.386 1.187 sum -4.267 -10.286 -0.441 11.145 Atomic orbital electron populations 1.69843 1.07570 1.29066 1.35190 1.25905 0.94695 1.01270 0.92292 0.86300 0.81018 0.81086 0.78540 1.18434 1.19712 1.20017 1.19625 0.98124 0.91353 1.40241 0.90500 1.17628 0.91100 0.91954 0.88370 1.20929 1.03849 0.92920 1.07042 1.20354 0.95875 0.96218 0.97969 1.18920 1.00403 0.93179 1.09004 1.20597 0.90801 0.94435 0.94515 1.60870 1.31372 1.31300 1.06292 1.21415 0.93316 0.86782 0.99216 0.90498 1.24028 1.00357 0.98667 0.98787 1.23326 0.97356 0.99198 0.97788 1.21420 0.96082 0.97658 0.98846 1.22478 0.95974 1.01234 0.95822 1.20504 0.97709 0.92490 0.99113 1.21314 0.99477 0.96761 1.01154 0.90949 0.89205 0.89995 0.96398 0.92041 0.84011 0.86472 0.86361 0.90531 0.91523 0.89674 0.91404 0.89469 0.86521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.74 10.95 55.55 0.61 -20.14 16 2 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 3 Si 0.91 18.80 29.59 -169.99 -5.03 13.77 16 4 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 5 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.46 -12.48 9.05 -37.74 -0.34 -12.83 16 8 H 0.08 1.99 7.91 -52.49 -0.42 1.58 16 9 C 0.11 3.03 5.58 -106.82 -0.60 2.44 16 10 C -0.23 -5.68 9.80 -38.87 -0.38 -6.06 16 11 C -0.09 -1.93 9.67 -39.66 -0.38 -2.31 16 12 C -0.21 -4.68 5.42 -104.33 -0.56 -5.25 16 13 C 0.12 2.23 5.65 -4.98 -0.03 2.20 16 14 N -0.67 -11.09 6.29 -108.10 -0.68 -11.77 16 15 C 0.10 1.39 3.23 -67.81 -0.22 1.18 16 16 H 0.08 1.03 7.82 -51.93 -0.41 0.62 16 17 C -0.20 -2.46 10.09 -35.70 -0.36 -2.82 16 18 C -0.16 -1.77 10.78 -35.67 -0.38 -2.16 16 19 C -0.10 -1.13 6.82 -26.80 -0.18 -1.32 16 20 C -0.12 -1.41 6.90 -25.01 -0.17 -1.58 16 21 C -0.08 -1.89 9.67 -39.66 -0.38 -2.27 16 22 C -0.17 -4.43 8.70 -38.87 -0.34 -4.77 16 23 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 24 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 25 H 0.08 1.64 8.06 -52.49 -0.42 1.22 16 26 H 0.02 0.30 8.08 -51.93 -0.42 -0.12 16 27 H 0.06 1.07 8.01 -51.93 -0.42 0.65 16 28 H 0.34 5.86 8.43 -39.30 -0.33 5.53 16 29 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.12 8.08 -51.93 -0.42 0.70 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 36 H 0.12 3.18 6.16 -52.49 -0.32 2.86 16 LS Contribution 302.12 15.07 4.55 4.55 Total: -1.00 -27.18 302.12 -10.22 -37.40 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -5.25 Total: 9.89 kcal Atomic # 6 Polarization: -29.28 SS G_CDS: -4.42 Total: -33.70 kcal Atomic # 7 Polarization: -31.84 SS G_CDS: -0.07 Total: -31.91 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.18 -10.22 -37.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698203770.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.560 kcal (2) G-P(sol) polarization free energy of solvation -27.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds