Wall clock time and date at job start Mon Mar 30 2020 05:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86794 * 119.99686 * 2 1 4 4 H 1.48503 * 109.47118 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47210 * 300.00159 * 3 2 1 6 6 H 1.48498 * 109.47448 * 60.00138 * 3 2 1 7 7 C 1.39942 * 120.00232 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00283 * 197.85361 * 7 2 1 9 9 C 1.41399 * 119.99889 * 17.85603 * 7 2 1 10 10 C 1.40720 * 120.24403 * 204.37768 * 9 7 2 11 11 C 1.37616 * 119.74751 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24846 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.75039 * 180.02562 * 12 11 10 14 14 N 1.46900 * 109.47194 * 90.00328 * 13 12 11 15 15 C 1.46888 * 110.99960 * 179.97438 * 14 13 12 16 16 H 1.09005 * 110.34829 * 327.28517 * 15 14 13 17 17 C 1.51104 * 110.39007 * 89.69639 * 15 14 13 18 18 C 1.30530 * 111.10070 * 102.37133 * 17 15 14 19 19 C 1.51160 * 111.12162 * 0.03741 * 18 17 15 20 20 C 1.54636 * 104.69664 * 16.38156 * 19 18 17 21 21 C 1.38637 * 120.49843 * 0.30143 * 12 11 10 22 22 C 1.37617 * 120.24827 * 359.43894 * 21 12 11 23 23 H 0.96994 * 120.00468 * 359.97438 * 1 2 3 24 24 H 1.08000 * 120.12599 * 0.02562 * 10 9 7 25 25 H 1.07993 * 119.87959 * 180.02562 * 11 10 9 26 26 H 1.08997 * 109.47184 * 330.00291 * 13 12 11 27 27 H 1.09003 * 109.46902 * 210.00516 * 13 12 11 28 28 H 1.00893 * 110.99647 * 303.95536 * 14 13 12 29 29 H 1.08001 * 124.44785 * 282.39940 * 17 15 14 30 30 H 1.08000 * 124.44296 * 180.02562 * 18 17 15 31 31 H 1.09007 * 110.37984 * 257.58807 * 19 18 17 32 32 H 1.08999 * 110.42342 * 135.19769 * 19 18 17 33 33 H 1.08995 * 111.03480 * 217.36317 * 20 19 18 34 34 H 1.09000 * 111.03587 * 93.46303 * 20 19 18 35 35 H 1.08002 * 119.87772 * 179.70520 * 21 12 11 36 36 H 1.08002 * 120.13170 * 180.27463 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 3.7022 1.3465 -0.0006 5 1 1.8833 2.3964 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0489 -1.2346 0.2862 9 6 1.3521 -2.4068 -0.3766 10 6 1.8260 -3.6499 0.0820 11 6 1.1801 -4.8065 -0.2907 12 6 0.0663 -4.7501 -1.1143 13 6 -0.6327 -6.0236 -1.5151 14 7 -1.6780 -6.3386 -0.5322 15 6 -2.3826 -7.5764 -0.8915 16 1 -2.4320 -7.6835 -1.9751 17 6 -1.6959 -8.7717 -0.2727 18 6 -2.3434 -9.1931 0.7794 19 6 -3.5709 -8.3495 1.0377 20 6 -3.8048 -7.5823 -0.2844 21 6 -0.4059 -3.5314 -1.5767 22 6 0.2210 -2.3617 -1.2124 23 1 -0.4850 0.8400 0.0004 24 1 2.6932 -3.6961 0.7240 25 1 1.5417 -5.7617 0.0603 26 1 0.0899 -6.8389 -1.5509 27 1 -1.0852 -5.8957 -2.4984 28 1 -1.2930 -6.3985 0.3985 29 1 -0.7883 -9.2184 -0.6511 30 1 -2.0418 -10.0343 1.3859 31 1 -3.3868 -7.6514 1.8544 32 1 -4.4274 -8.9840 1.2652 33 1 -4.1521 -6.5673 -0.0915 34 1 -4.5031 -8.1167 -0.9286 35 1 -1.2716 -3.4995 -2.2217 36 1 -0.1511 -1.4130 -1.5701 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698203770.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:23 Heat of formation + Delta-G solvation = 14.219381 kcal Electronic energy + Delta-G solvation = -16438.777867 eV Core-core repulsion = 13886.451986 eV Total energy + Delta-G solvation = -2552.325880 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.11478 -39.27644 -36.14345 -34.74142 -31.80231 -31.11296 -29.84984 -28.63233 -26.76670 -24.57065 -22.84355 -21.70048 -21.27031 -19.73090 -19.21159 -17.48909 -17.12799 -16.44186 -16.05778 -15.72056 -15.57951 -14.92779 -14.50198 -14.21853 -13.81697 -13.59245 -13.37978 -12.95177 -12.81314 -12.66578 -12.62553 -12.51530 -12.25052 -12.14775 -12.01002 -11.74779 -11.35549 -11.21039 -10.99749 -10.11224 -9.33760 -9.28107 -9.08798 -8.62494 -6.32509 0.94844 1.16059 1.31092 1.38236 1.50825 1.53951 2.21461 2.70712 3.45679 3.74762 3.79987 3.91983 4.25991 4.30650 4.38379 4.44442 4.56028 4.61294 4.68990 4.79770 4.85515 4.94668 5.06083 5.07825 5.17288 5.25550 5.35300 5.40357 5.47950 5.57659 5.72579 5.93209 5.96530 6.11599 6.22023 6.31451 6.40460 6.54739 6.72513 6.95575 7.05704 8.34564 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.046164 B = 0.004339 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.387789 B = 6450.905336 C = 6617.432477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.035 3.965 3 Si 0.982 3.018 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.503 4.503 8 H 0.074 0.926 9 C 0.079 3.921 10 C -0.244 4.244 11 C -0.085 4.085 12 C -0.201 4.201 13 C 0.132 3.868 14 N -0.679 5.679 15 C 0.100 3.900 16 H 0.078 0.922 17 C -0.215 4.215 18 C -0.146 4.146 19 C -0.104 4.104 20 C -0.116 4.116 21 C -0.086 4.086 22 C -0.192 4.192 23 H 0.287 0.713 24 H 0.095 0.905 25 H 0.113 0.887 26 H 0.033 0.967 27 H 0.068 0.932 28 H 0.337 0.663 29 H 0.123 0.877 30 H 0.138 0.862 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.073 -12.349 -0.384 13.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.182 1.182 5 H -0.188 1.188 6 H -0.190 1.190 7 C -0.533 4.533 8 H 0.092 0.908 9 C 0.077 3.923 10 C -0.264 4.264 11 C -0.104 4.104 12 C -0.202 4.202 13 C 0.004 3.996 14 N -0.309 5.309 15 C -0.009 4.009 16 H 0.096 0.904 17 C -0.235 4.235 18 C -0.165 4.165 19 C -0.141 4.141 20 C -0.154 4.154 21 C -0.105 4.105 22 C -0.211 4.211 23 H 0.098 0.902 24 H 0.113 0.887 25 H 0.131 0.869 26 H 0.051 0.949 27 H 0.087 0.913 28 H 0.155 0.845 29 H 0.141 0.859 30 H 0.156 0.844 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.119 0.881 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.761 -11.771 -0.691 13.124 hybrid contribution 1.140 0.277 0.341 1.221 sum -4.622 -11.495 -0.350 12.394 Atomic orbital electron populations 1.69895 1.09059 1.30444 1.35813 1.26763 0.95462 1.04536 0.91205 0.85163 0.79392 0.76179 0.78975 1.18192 1.18844 1.18986 1.19867 0.98322 0.92693 1.42422 0.90806 1.17971 0.91950 0.93092 0.89308 1.21150 1.04467 0.93244 1.07503 1.20674 0.95568 0.96727 0.97398 1.19358 0.99692 0.94275 1.06893 1.20491 0.91383 0.92661 0.95066 1.60789 1.30706 1.33720 1.05653 1.21492 0.93843 0.86034 0.99567 0.90398 1.23984 1.01088 0.98792 0.99628 1.23576 0.96694 0.99114 0.97106 1.21452 0.96929 0.97730 0.97983 1.22478 0.95352 1.00893 0.96723 1.20738 0.97971 0.92544 0.99267 1.21276 1.00394 0.97034 1.02407 0.90189 0.88696 0.86929 0.94869 0.91347 0.84494 0.85938 0.84388 0.91148 0.89490 0.91139 0.89705 0.88052 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.57 10.95 21.83 0.24 -44.33 16 2 C 0.03 1.81 5.14 85.26 0.44 2.25 16 3 Si 0.98 39.10 29.59 68.60 2.03 41.13 16 4 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 5 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 6 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 7 C -0.50 -28.07 9.05 23.46 0.21 -27.86 16 8 H 0.07 3.98 7.91 -2.91 -0.02 3.96 16 9 C 0.08 4.42 5.58 -21.29 -0.12 4.30 16 10 C -0.24 -12.33 9.80 22.73 0.22 -12.10 16 11 C -0.09 -3.75 9.67 22.22 0.21 -3.54 16 12 C -0.20 -8.59 5.42 -19.67 -0.11 -8.70 16 13 C 0.13 4.46 5.65 85.56 0.48 4.94 16 14 N -0.68 -21.30 6.29 -495.91 -3.12 -24.42 16 15 C 0.10 2.49 3.23 44.86 0.14 2.64 16 16 H 0.08 1.91 7.82 -2.38 -0.02 1.89 16 17 C -0.22 -4.76 10.09 26.26 0.27 -4.49 16 18 C -0.15 -2.83 10.78 26.28 0.28 -2.55 16 19 C -0.10 -2.01 6.82 30.55 0.21 -1.80 16 20 C -0.12 -2.55 6.90 31.71 0.22 -2.33 16 21 C -0.09 -4.13 9.67 22.22 0.21 -3.92 16 22 C -0.19 -10.46 8.70 22.73 0.20 -10.26 16 23 H 0.29 13.95 8.30 -92.71 -0.77 13.19 16 24 H 0.09 4.55 8.06 -2.91 -0.02 4.53 16 25 H 0.11 4.23 8.06 -2.91 -0.02 4.21 16 26 H 0.03 1.03 8.08 -2.39 -0.02 1.01 16 27 H 0.07 2.23 8.01 -2.39 -0.02 2.21 16 28 H 0.34 11.00 8.43 -89.70 -0.76 10.24 16 29 H 0.12 2.56 8.06 -2.91 -0.02 2.53 16 30 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 31 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.07 1.76 8.08 -2.39 -0.02 1.74 16 34 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.10 4.45 8.06 -2.91 -0.02 4.43 16 36 H 0.10 5.62 6.16 -2.91 -0.02 5.60 16 Total: -1.00 -59.45 302.12 2.33 -57.12 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: 0.30 Total: 33.94 kcal Atomic # 6 Polarization: -66.31 SS G_CDS: 2.88 Total: -63.43 kcal Atomic # 7 Polarization: -65.87 SS G_CDS: -2.88 Total: -68.75 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Total: -59.45 2.33 -57.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698203770.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.335 kcal (2) G-P(sol) polarization free energy of solvation -59.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds