Wall clock time and date at job start Mon Mar 30 2020 05:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86797 * 120.00268 * 2 1 4 4 H 1.48500 * 109.47379 * 240.00313 * 3 2 1 5 5 H 1.48499 * 109.47092 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46998 * 120.00158 * 3 2 1 7 7 C 1.39950 * 119.99785 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99891 * 197.85901 * 7 2 1 9 9 C 1.41399 * 119.99653 * 17.85615 * 7 2 1 10 10 C 1.40715 * 120.24032 * 204.38468 * 9 7 2 11 11 C 1.37622 * 119.74555 * 179.97438 * 10 9 7 12 12 C 1.38638 * 120.24463 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.74522 * 179.71919 * 12 11 10 14 14 N 1.46904 * 109.47036 * 90.00033 * 13 12 11 15 15 C 1.46900 * 111.00002 * 179.97438 * 14 13 12 16 16 H 1.09003 * 110.34084 * 34.30040 * 15 14 13 17 17 C 1.51102 * 110.38853 * 272.01725 * 15 14 13 18 18 C 1.30805 * 110.94107 * 257.62323 * 17 15 14 19 19 C 1.51097 * 111.15198 * 359.94846 * 18 17 15 20 20 C 1.54625 * 110.38627 * 156.58732 * 15 14 13 21 21 C 1.38632 * 120.50319 * 359.97438 * 12 11 10 22 22 C 1.37620 * 120.24640 * 0.02562 * 21 12 11 23 23 H 0.97001 * 119.99739 * 359.97438 * 1 2 3 24 24 H 1.07998 * 120.12942 * 0.02562 * 10 9 7 25 25 H 1.07998 * 119.87554 * 179.97438 * 11 10 9 26 26 H 1.09004 * 109.46934 * 210.00192 * 13 12 11 27 27 H 1.08995 * 109.47150 * 329.99900 * 13 12 11 28 28 H 1.00906 * 110.99603 * 56.04543 * 14 13 12 29 29 H 1.07993 * 124.45251 * 77.61807 * 17 15 14 30 30 H 1.08004 * 124.40120 * 180.02562 * 18 17 15 31 31 H 1.09000 * 110.38659 * 224.78586 * 19 18 17 32 32 H 1.09001 * 110.38506 * 102.41044 * 19 18 17 33 33 H 1.09000 * 111.03957 * 212.21481 * 20 15 14 34 34 H 1.09003 * 111.03946 * 336.14480 * 20 15 14 35 35 H 1.08001 * 119.87567 * 179.97438 * 21 12 11 36 36 H 1.08007 * 120.12260 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2774 2.7464 0.0006 6 1 3.0961 1.6962 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0489 -1.2347 0.2863 9 6 1.3519 -2.4068 -0.3766 10 6 1.8256 -3.6500 0.0821 11 6 1.1790 -4.8065 -0.2897 12 6 0.0652 -4.7499 -1.1135 13 6 -0.6304 -6.0238 -1.5188 14 7 -1.6752 -6.3449 -0.5373 15 6 -2.3766 -7.5832 -0.9011 16 1 -1.6882 -8.2837 -1.3740 17 6 -3.5352 -7.2807 -1.8226 18 6 -4.6701 -7.3130 -1.1730 19 6 -4.4542 -7.6433 0.2856 20 6 -3.0224 -8.2238 0.3494 21 6 -0.4101 -3.5308 -1.5713 22 6 0.2207 -2.3616 -1.2122 23 1 -0.4850 0.8401 0.0004 24 1 2.6927 -3.6963 0.7242 25 1 1.5409 -5.7617 0.0608 26 1 -1.0830 -5.8936 -2.5019 27 1 0.0942 -6.8370 -1.5574 28 1 -2.3238 -5.5786 -0.4359 29 1 -3.4378 -7.0664 -2.8766 30 1 -5.6353 -7.1290 -1.6213 31 1 -5.1799 -8.3853 0.6184 32 1 -4.5258 -6.7415 0.8937 33 1 -3.0369 -9.3107 0.2690 34 1 -2.5119 -7.9073 1.2590 35 1 -1.2783 -3.4985 -2.2129 36 1 -0.1511 -1.4129 -1.5703 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698203772.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:26 Heat of formation + Delta-G solvation = 27.704256 kcal Electronic energy + Delta-G solvation = -16452.643722 eV Core-core repulsion = 13900.902590 eV Total energy + Delta-G solvation = -2551.741132 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.98440 -37.52737 -34.50413 -33.12337 -30.06380 -29.21302 -28.90255 -27.17668 -25.30459 -22.93787 -20.96573 -20.35332 -19.79292 -18.78349 -17.26141 -16.39131 -15.36783 -15.29839 -14.52714 -14.18311 -13.79982 -13.42807 -13.15045 -12.54142 -12.18393 -11.92628 -11.89960 -11.69408 -11.58209 -11.34805 -11.18740 -11.03458 -10.94459 -10.84147 -10.40632 -10.32842 -9.54186 -9.35990 -9.19221 -9.04822 -7.94745 -7.41544 -7.26267 -6.74137 -4.32519 2.21269 2.78357 3.07076 3.09775 3.12010 3.21952 3.94336 4.49826 4.68056 4.71745 4.95711 5.26484 5.30399 5.49387 5.71992 5.75426 5.82267 5.89898 5.95986 6.00975 6.16502 6.28789 6.36026 6.41325 6.45985 6.47975 6.84878 6.97678 7.09999 7.31102 7.41248 7.48814 7.64676 7.81352 7.93302 8.08160 8.18155 8.33571 8.66799 8.92244 9.00994 10.20403 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.041266 B = 0.004475 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.365797 B = 6255.989549 C = 6542.679301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.112 3.888 10 C -0.229 4.229 11 C -0.069 4.069 12 C -0.214 4.214 13 C 0.124 3.876 14 N -0.669 5.669 15 C 0.102 3.898 16 H 0.077 0.923 17 C -0.199 4.199 18 C -0.158 4.158 19 C -0.103 4.103 20 C -0.117 4.117 21 C -0.095 4.095 22 C -0.167 4.167 23 H 0.280 0.720 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.019 0.981 27 H 0.060 0.940 28 H 0.342 0.658 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.347 -9.570 -1.879 11.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.248 4.248 11 C -0.088 4.088 12 C -0.216 4.216 13 C -0.004 4.004 14 N -0.299 5.299 15 C -0.008 4.008 16 H 0.095 0.905 17 C -0.219 4.219 18 C -0.177 4.177 19 C -0.140 4.140 20 C -0.155 4.155 21 C -0.114 4.114 22 C -0.186 4.186 23 H 0.091 0.909 24 H 0.109 0.891 25 H 0.105 0.895 26 H 0.037 0.963 27 H 0.079 0.921 28 H 0.161 0.839 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.085 -9.723 -1.419 11.558 hybrid contribution -0.356 1.200 -0.822 1.497 sum -6.441 -8.523 -2.241 10.916 Atomic orbital electron populations 1.69829 1.07589 1.29229 1.35221 1.25905 0.94699 1.01261 0.92248 0.86386 0.80168 0.80296 0.79972 1.18844 1.20367 1.19009 1.19574 0.98135 0.91366 1.40322 0.90522 1.17613 0.91054 0.92005 0.88332 1.20977 1.03896 0.92940 1.07020 1.20339 0.95257 0.96345 0.96840 1.18916 1.01025 0.92584 1.09044 1.20593 0.92407 0.95875 0.91489 1.60910 1.15480 1.05044 1.48460 1.21414 0.92967 0.93498 0.92872 0.90510 1.24111 0.96405 1.01780 0.99601 1.23386 0.98002 1.00149 0.96173 1.21405 0.97319 1.00854 0.94433 1.22471 0.94898 0.99031 0.99066 1.20520 0.98214 0.92914 0.99727 1.21270 0.99495 0.96619 1.01223 0.90882 0.89119 0.89464 0.96316 0.92113 0.83920 0.86407 0.86350 0.91518 0.90514 0.91388 0.89719 0.89994 0.86584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.73 10.95 55.55 0.61 -20.12 16 2 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 3 Si 0.91 18.80 29.60 -169.99 -5.03 13.76 16 4 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 7 C -0.46 -12.49 9.05 -37.74 -0.34 -12.84 16 8 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 9 C 0.11 3.04 5.57 -106.83 -0.60 2.45 16 10 C -0.23 -5.74 9.80 -38.87 -0.38 -6.12 16 11 C -0.07 -1.58 9.67 -39.66 -0.38 -1.96 16 12 C -0.21 -4.70 5.41 -104.33 -0.56 -5.26 16 13 C 0.12 2.23 5.64 -4.97 -0.03 2.20 16 14 N -0.67 -11.10 6.28 -108.10 -0.68 -11.78 16 15 C 0.10 1.39 3.21 -67.81 -0.22 1.17 16 16 H 0.08 1.02 7.84 -51.93 -0.41 0.62 16 17 C -0.20 -2.52 10.10 -35.78 -0.36 -2.88 16 18 C -0.16 -1.81 10.78 -35.78 -0.39 -2.20 16 19 C -0.10 -1.14 6.81 -26.83 -0.18 -1.32 16 20 C -0.12 -1.39 6.90 -25.02 -0.17 -1.56 16 21 C -0.09 -2.23 9.67 -39.66 -0.38 -2.61 16 22 C -0.17 -4.38 8.70 -38.88 -0.34 -4.72 16 23 H 0.28 6.67 8.30 -40.82 -0.34 6.34 16 24 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 25 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 26 H 0.02 0.32 8.08 -51.93 -0.42 -0.10 16 27 H 0.06 1.04 8.01 -51.93 -0.42 0.63 16 28 H 0.34 5.98 8.46 -39.29 -0.33 5.65 16 29 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 30 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.09 8.08 -51.93 -0.42 0.67 16 35 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.12 3.15 6.16 -52.48 -0.32 2.82 16 LS Contribution 302.14 15.07 4.55 4.55 Total: -1.00 -27.06 302.14 -10.22 -37.29 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -5.25 Total: 10.09 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: -4.43 Total: -33.79 kcal Atomic # 7 Polarization: -31.83 SS G_CDS: -0.07 Total: -31.90 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.06 -10.22 -37.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698203772.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.991 kcal (2) G-P(sol) polarization free energy of solvation -27.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds