Wall clock time and date at job start Mon Mar 30 2020 05:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86797 * 120.00268 * 2 1 4 4 H 1.48500 * 109.47379 * 240.00313 * 3 2 1 5 5 H 1.48499 * 109.47092 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46998 * 120.00158 * 3 2 1 7 7 C 1.39950 * 119.99785 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99891 * 197.85901 * 7 2 1 9 9 C 1.41399 * 119.99653 * 17.85615 * 7 2 1 10 10 C 1.40715 * 120.24032 * 204.38468 * 9 7 2 11 11 C 1.37622 * 119.74555 * 179.97438 * 10 9 7 12 12 C 1.38638 * 120.24463 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.74522 * 179.71919 * 12 11 10 14 14 N 1.46904 * 109.47036 * 90.00033 * 13 12 11 15 15 C 1.46900 * 111.00002 * 179.97438 * 14 13 12 16 16 H 1.09003 * 110.34084 * 34.30040 * 15 14 13 17 17 C 1.51102 * 110.38853 * 272.01725 * 15 14 13 18 18 C 1.30805 * 110.94107 * 257.62323 * 17 15 14 19 19 C 1.51097 * 111.15198 * 359.94846 * 18 17 15 20 20 C 1.54625 * 110.38627 * 156.58732 * 15 14 13 21 21 C 1.38632 * 120.50319 * 359.97438 * 12 11 10 22 22 C 1.37620 * 120.24640 * 0.02562 * 21 12 11 23 23 H 0.97001 * 119.99739 * 359.97438 * 1 2 3 24 24 H 1.07998 * 120.12942 * 0.02562 * 10 9 7 25 25 H 1.07998 * 119.87554 * 179.97438 * 11 10 9 26 26 H 1.09004 * 109.46934 * 210.00192 * 13 12 11 27 27 H 1.08995 * 109.47150 * 329.99900 * 13 12 11 28 28 H 1.00906 * 110.99603 * 56.04543 * 14 13 12 29 29 H 1.07993 * 124.45251 * 77.61807 * 17 15 14 30 30 H 1.08004 * 124.40120 * 180.02562 * 18 17 15 31 31 H 1.09000 * 110.38659 * 224.78586 * 19 18 17 32 32 H 1.09001 * 110.38506 * 102.41044 * 19 18 17 33 33 H 1.09000 * 111.03957 * 212.21481 * 20 15 14 34 34 H 1.09003 * 111.03946 * 336.14480 * 20 15 14 35 35 H 1.08001 * 119.87567 * 179.97438 * 21 12 11 36 36 H 1.08007 * 120.12260 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2774 2.7464 0.0006 6 1 3.0961 1.6962 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0489 -1.2347 0.2863 9 6 1.3519 -2.4068 -0.3766 10 6 1.8256 -3.6500 0.0821 11 6 1.1790 -4.8065 -0.2897 12 6 0.0652 -4.7499 -1.1135 13 6 -0.6304 -6.0238 -1.5188 14 7 -1.6752 -6.3449 -0.5373 15 6 -2.3766 -7.5832 -0.9011 16 1 -1.6882 -8.2837 -1.3740 17 6 -3.5352 -7.2807 -1.8226 18 6 -4.6701 -7.3130 -1.1730 19 6 -4.4542 -7.6433 0.2856 20 6 -3.0224 -8.2238 0.3494 21 6 -0.4101 -3.5308 -1.5713 22 6 0.2207 -2.3616 -1.2122 23 1 -0.4850 0.8401 0.0004 24 1 2.6927 -3.6963 0.7242 25 1 1.5409 -5.7617 0.0608 26 1 -1.0830 -5.8936 -2.5019 27 1 0.0942 -6.8370 -1.5574 28 1 -2.3238 -5.5786 -0.4359 29 1 -3.4378 -7.0664 -2.8766 30 1 -5.6353 -7.1290 -1.6213 31 1 -5.1799 -8.3853 0.6184 32 1 -4.5258 -6.7415 0.8937 33 1 -3.0369 -9.3107 0.2690 34 1 -2.5119 -7.9073 1.2590 35 1 -1.2783 -3.4985 -2.2129 36 1 -0.1511 -1.4129 -1.5703 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698203772.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:26 Heat of formation + Delta-G solvation = 13.909044 kcal Electronic energy + Delta-G solvation = -16453.241927 eV Core-core repulsion = 13900.902590 eV Total energy + Delta-G solvation = -2552.339338 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.11058 -39.27358 -36.13695 -34.73874 -31.79314 -31.11649 -29.84059 -28.63171 -26.76784 -24.55377 -22.87651 -21.67044 -21.26817 -19.74385 -19.20473 -17.54151 -17.07126 -16.43848 -16.02093 -15.78980 -15.57525 -14.93058 -14.49831 -14.20271 -13.79971 -13.62442 -13.32237 -12.96609 -12.81676 -12.71166 -12.65295 -12.39284 -12.38829 -12.09371 -12.01667 -11.74463 -11.32660 -11.24503 -10.99831 -10.10414 -9.37296 -9.23645 -9.11136 -8.63046 -6.32558 0.95147 1.16735 1.29523 1.37813 1.49072 1.54270 2.21104 2.70666 3.45250 3.74361 3.79789 3.92204 4.25394 4.31058 4.37668 4.43859 4.58133 4.62593 4.69290 4.79433 4.85213 4.94048 5.05713 5.06259 5.17106 5.25833 5.35284 5.38935 5.49052 5.57051 5.72312 5.91893 5.96996 6.11310 6.23056 6.28403 6.41083 6.52409 6.71578 6.95368 7.05541 8.33877 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.041266 B = 0.004475 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.365797 B = 6255.989549 C = 6542.679301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.036 3.964 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.505 4.505 8 H 0.074 0.926 9 C 0.079 3.921 10 C -0.245 4.245 11 C -0.073 4.073 12 C -0.201 4.201 13 C 0.132 3.868 14 N -0.677 5.677 15 C 0.100 3.900 16 H 0.080 0.920 17 C -0.218 4.218 18 C -0.147 4.147 19 C -0.104 4.104 20 C -0.115 4.115 21 C -0.098 4.098 22 C -0.191 4.191 23 H 0.288 0.712 24 H 0.095 0.905 25 H 0.113 0.887 26 H 0.028 0.972 27 H 0.073 0.927 28 H 0.336 0.664 29 H 0.121 0.879 30 H 0.136 0.864 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.169 -10.654 -2.086 13.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.179 4.179 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.184 1.184 7 C -0.534 4.534 8 H 0.092 0.908 9 C 0.077 3.923 10 C -0.265 4.265 11 C -0.091 4.091 12 C -0.203 4.203 13 C 0.004 3.996 14 N -0.306 5.306 15 C -0.009 4.009 16 H 0.098 0.902 17 C -0.237 4.237 18 C -0.167 4.167 19 C -0.141 4.141 20 C -0.153 4.153 21 C -0.117 4.117 22 C -0.210 4.210 23 H 0.098 0.902 24 H 0.113 0.887 25 H 0.131 0.869 26 H 0.046 0.954 27 H 0.092 0.908 28 H 0.153 0.847 29 H 0.139 0.861 30 H 0.154 0.846 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.119 0.881 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.914 -10.837 -1.625 12.957 hybrid contribution -0.191 1.360 -0.760 1.569 sum -7.105 -9.477 -2.385 12.083 Atomic orbital electron populations 1.69883 1.09036 1.30539 1.35777 1.26758 0.95477 1.04495 0.91165 0.85259 0.78802 0.75623 0.80055 1.18504 1.19101 1.18361 1.19832 0.98385 0.92714 1.42516 0.90775 1.17959 0.91974 0.93045 0.89302 1.21185 1.04494 0.93290 1.07515 1.20654 0.95229 0.96693 0.96572 1.19355 1.00203 0.93826 1.06876 1.20499 0.92989 0.94019 0.92139 1.60849 1.15669 1.05883 1.48230 1.21503 0.93352 0.92044 0.94042 0.90197 1.24087 0.96345 1.03486 0.99816 1.23647 0.98504 0.98309 0.96213 1.21442 0.97355 1.01139 0.94180 1.22469 0.95068 1.00045 0.97669 1.20760 0.98497 0.92716 0.99704 1.21248 1.00359 0.97002 1.02423 0.90184 0.88726 0.86900 0.95379 0.90828 0.84688 0.86135 0.84582 0.89425 0.91190 0.89557 0.90872 0.88090 0.88319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.32 10.95 21.83 0.24 -44.08 16 2 C 0.04 1.85 5.14 85.26 0.44 2.29 16 3 Si 0.98 38.98 29.60 68.60 2.03 41.01 16 4 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 5 H -0.27 -9.95 7.11 99.48 0.71 -9.25 16 6 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 7 C -0.50 -28.14 9.05 23.46 0.21 -27.93 16 8 H 0.07 3.98 7.91 -2.91 -0.02 3.96 16 9 C 0.08 4.44 5.57 -21.29 -0.12 4.33 16 10 C -0.25 -12.51 9.80 22.73 0.22 -12.29 16 11 C -0.07 -3.28 9.67 22.22 0.21 -3.07 16 12 C -0.20 -8.61 5.41 -19.67 -0.11 -8.72 16 13 C 0.13 4.44 5.64 85.56 0.48 4.93 16 14 N -0.68 -21.20 6.28 -495.90 -3.11 -24.32 16 15 C 0.10 2.49 3.21 44.85 0.14 2.63 16 16 H 0.08 1.93 7.84 -2.39 -0.02 1.91 16 17 C -0.22 -4.99 10.10 25.97 0.26 -4.72 16 18 C -0.15 -2.99 10.78 25.97 0.28 -2.71 16 19 C -0.10 -2.04 6.81 30.53 0.21 -1.83 16 20 C -0.11 -2.45 6.90 31.70 0.22 -2.24 16 21 C -0.10 -4.60 9.67 22.22 0.21 -4.38 16 22 C -0.19 -10.32 8.70 22.73 0.20 -10.13 16 23 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 24 H 0.09 4.59 8.06 -2.91 -0.02 4.57 16 25 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 26 H 0.03 0.90 8.08 -2.39 -0.02 0.88 16 27 H 0.07 2.32 8.01 -2.39 -0.02 2.30 16 28 H 0.34 11.25 8.46 -89.69 -0.76 10.50 16 29 H 0.12 2.66 8.06 -2.91 -0.02 2.64 16 30 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 31 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.07 1.75 8.08 -2.39 -0.02 1.73 16 35 H 0.10 4.26 8.06 -2.91 -0.02 4.24 16 36 H 0.10 5.59 6.16 -2.91 -0.02 5.57 16 Total: -1.00 -59.01 302.14 2.33 -56.68 By element: Atomic # 1 Polarization: 34.25 SS G_CDS: 0.30 Total: 34.55 kcal Atomic # 6 Polarization: -66.71 SS G_CDS: 2.87 Total: -63.84 kcal Atomic # 7 Polarization: -65.53 SS G_CDS: -2.88 Total: -68.40 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -59.01 2.33 -56.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698203772.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.588 kcal (2) G-P(sol) polarization free energy of solvation -59.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds