Wall clock time and date at job start Mon Mar 30 2020 05:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99852 * 2 1 4 4 H 1.48493 * 109.47322 * 239.99436 * 3 2 1 5 5 H 1.48496 * 109.47161 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46942 * 119.99756 * 3 2 1 7 7 C 1.37876 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99946 * 182.52888 * 7 2 1 9 9 C 1.50702 * 119.99968 * 2.52306 * 7 2 1 10 10 H 1.09009 * 109.46660 * 174.80012 * 9 7 2 11 11 N 1.46897 * 109.47187 * 54.80157 * 9 7 2 12 12 C 1.46898 * 111.00171 * 84.99451 * 11 9 7 13 13 H 1.09005 * 110.34561 * 327.29109 * 12 11 9 14 14 C 1.51101 * 110.38163 * 89.69777 * 12 11 9 15 15 C 1.30529 * 111.10125 * 135.24992 * 14 12 11 16 16 C 1.51108 * 111.10485 * 359.97438 * 15 14 12 17 17 C 1.54626 * 104.72254 * 343.56467 * 16 15 14 18 18 C 1.50698 * 109.47135 * 294.79593 * 9 7 2 19 19 C 1.38237 * 119.99953 * 90.50953 * 18 9 7 20 20 C 1.38227 * 120.00251 * 179.97438 * 19 18 9 21 21 C 1.38243 * 119.99904 * 0.27315 * 20 19 18 22 22 C 1.38234 * 119.99665 * 359.51145 * 21 20 19 23 23 C 1.38234 * 120.00164 * 270.48336 * 18 9 7 24 24 H 0.96994 * 120.00282 * 0.02562 * 1 2 3 25 25 H 1.00905 * 110.99871 * 321.04262 * 11 9 7 26 26 H 1.07992 * 124.45420 * 315.22216 * 14 12 11 27 27 H 1.07999 * 124.44845 * 179.97438 * 15 14 12 28 28 H 1.08993 * 110.38653 * 224.75029 * 16 15 14 29 29 H 1.08997 * 110.48176 * 102.42813 * 16 15 14 30 30 H 1.08995 * 111.04014 * 266.60036 * 17 16 15 31 31 H 1.09007 * 111.06921 * 142.67999 * 17 16 15 32 32 H 1.08001 * 119.99710 * 359.96760 * 19 18 9 33 33 H 1.08002 * 120.00511 * 179.97438 * 20 19 18 34 34 H 1.08001 * 119.99683 * 179.72656 * 21 20 19 35 35 H 1.08008 * 120.00051 * 180.27398 * 22 21 20 36 36 H 1.08000 * 120.00382 * 359.97300 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0838 -1.1945 0.0418 9 6 1.2521 -2.4985 -0.0563 10 1 1.9603 -3.3230 -0.1403 11 7 0.3598 -2.4987 -1.2232 12 6 1.0740 -2.9303 -2.4321 13 1 2.1164 -2.6144 -2.3896 14 6 0.9821 -4.4302 -2.5903 15 6 0.7026 -4.7565 -3.8229 16 6 0.5610 -3.5286 -4.6920 17 6 0.3882 -2.3593 -3.6951 18 6 0.4364 -2.6631 1.2000 19 6 -0.8629 -2.1935 1.2470 20 6 -1.6114 -2.3449 2.3991 21 6 -1.0587 -2.9609 3.5065 22 6 0.2391 -3.4345 3.4580 23 6 0.9872 -3.2842 2.3054 24 1 -0.4850 0.8400 -0.0004 25 1 -0.0612 -1.5914 -1.3565 26 1 1.1288 -5.1392 -1.7890 27 1 0.5877 -5.7709 -4.1753 28 1 -0.3174 -3.6153 -5.3315 29 1 1.4566 -3.3834 -5.2961 30 1 -0.6664 -2.1556 -3.5098 31 1 0.9011 -1.4645 -4.0479 32 1 -1.2932 -1.7082 0.3834 33 1 -2.6264 -1.9776 2.4360 34 1 -1.6421 -3.0752 4.4081 35 1 0.6694 -3.9197 4.3217 36 1 2.0020 -3.6519 2.2685 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698248272.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:35 Heat of formation + Delta-G solvation = 34.182639 kcal Electronic energy + Delta-G solvation = -17450.556597 eV Core-core repulsion = 14899.096388 eV Total energy + Delta-G solvation = -2551.460209 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.11453 -39.24470 -36.44318 -33.43813 -31.68569 -31.20698 -29.77005 -28.52227 -26.48797 -24.26529 -22.93660 -21.61995 -21.38403 -19.40617 -18.26885 -17.54909 -16.97890 -16.63008 -16.27613 -15.57083 -15.31794 -15.00539 -14.12645 -14.05558 -13.78017 -13.54113 -13.23789 -12.93153 -12.79641 -12.64741 -12.62767 -12.48301 -12.07528 -12.06234 -11.87220 -11.62202 -11.37040 -11.21808 -10.62909 -9.74408 -9.42153 -9.10677 -8.80832 -7.95322 -6.32369 0.88940 1.03525 1.36594 1.39181 1.44986 1.52125 2.37484 3.07798 3.39947 3.86708 3.94691 3.98112 4.36055 4.39130 4.40519 4.53612 4.64920 4.69743 4.80065 4.90037 4.94686 4.99716 5.08290 5.21778 5.25451 5.27981 5.38609 5.53554 5.63748 5.69785 5.71539 5.92831 6.07932 6.10471 6.16641 6.39189 6.52197 6.61895 6.99281 7.24309 7.43772 8.83437 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.015897 B = 0.010318 C = 0.007173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.935829 B = 2713.000023 C = 3902.676014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.943 3.057 4 H -0.276 1.276 5 H -0.279 1.279 6 H -0.283 1.283 7 C -0.563 4.563 8 H 0.040 0.960 9 C 0.240 3.760 10 H 0.021 0.979 11 N -0.678 5.678 12 C 0.102 3.898 13 H 0.025 0.975 14 C -0.155 4.155 15 C -0.170 4.170 16 C -0.088 4.088 17 C -0.123 4.123 18 C -0.043 4.043 19 C -0.070 4.070 20 C -0.155 4.155 21 C -0.149 4.149 22 C -0.141 4.141 23 C -0.154 4.154 24 H 0.267 0.733 25 H 0.356 0.644 26 H 0.108 0.892 27 H 0.145 0.855 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.670 -5.285 -3.081 6.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.161 4.161 3 Si 0.769 3.231 4 H -0.201 1.201 5 H -0.204 1.204 6 H -0.209 1.209 7 C -0.602 4.602 8 H 0.059 0.941 9 C 0.131 3.869 10 H 0.039 0.961 11 N -0.314 5.314 12 C -0.008 4.008 13 H 0.042 0.958 14 C -0.174 4.174 15 C -0.188 4.188 16 C -0.125 4.125 17 C -0.161 4.161 18 C -0.044 4.044 19 C -0.089 4.089 20 C -0.173 4.173 21 C -0.167 4.167 22 C -0.159 4.159 23 C -0.173 4.173 24 H 0.077 0.923 25 H 0.180 0.820 26 H 0.126 0.874 27 H 0.162 0.838 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.154 0.846 35 H 0.152 0.848 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.098 -5.737 -2.964 6.789 hybrid contribution 1.336 1.907 0.172 2.335 sum -0.761 -3.829 -2.792 4.800 Atomic orbital electron populations 1.69721 1.05983 1.27249 1.48943 1.25465 0.95717 1.01112 0.93771 0.85864 0.78749 0.80239 0.78227 1.20104 1.20361 1.20850 1.21807 0.92899 0.92694 1.52778 0.94145 1.18024 0.88957 0.93063 0.86879 0.96100 1.61047 1.32297 1.35856 1.02150 1.21302 0.95437 0.92958 0.91149 0.95762 1.23267 1.00322 0.96260 0.97525 1.23382 1.01044 0.99633 0.94761 1.21266 1.02640 0.91569 0.97021 1.22605 1.00517 0.98275 0.94747 1.20272 0.94247 0.93631 0.96292 1.21223 0.93929 0.95387 0.98369 1.21378 1.00181 1.01457 0.94326 1.21176 0.95954 1.00888 0.98659 1.21133 0.95075 1.02010 0.97647 1.21067 0.99583 1.02253 0.94384 0.92291 0.81958 0.87426 0.83763 0.89647 0.89877 0.91491 0.91800 0.85722 0.86085 0.84630 0.84778 0.87518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.51 7.97 21.45 0.17 -45.34 16 2 C 0.04 2.17 5.05 84.65 0.43 2.60 16 3 Si 0.94 42.33 29.54 68.60 2.03 44.36 16 4 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 6 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 7 C -0.56 -30.27 8.56 25.60 0.22 -30.06 16 8 H 0.04 2.22 7.81 -2.91 -0.02 2.20 16 9 C 0.24 12.05 2.36 43.42 0.10 12.15 16 10 H 0.02 1.06 7.77 -2.38 -0.02 1.04 16 11 N -0.68 -31.81 5.21 -477.47 -2.49 -34.29 16 12 C 0.10 4.19 2.99 44.86 0.13 4.32 16 13 H 0.02 1.12 7.68 -2.38 -0.02 1.10 16 14 C -0.15 -5.55 10.34 26.26 0.27 -5.28 16 15 C -0.17 -4.88 10.78 26.26 0.28 -4.60 16 16 C -0.09 -2.36 6.81 30.53 0.21 -2.16 16 17 C -0.12 -4.26 6.60 31.71 0.21 -4.05 16 18 C -0.04 -2.11 4.79 -19.87 -0.10 -2.20 16 19 C -0.07 -3.33 7.66 22.27 0.17 -3.16 16 20 C -0.16 -6.33 10.05 22.27 0.22 -6.11 16 21 C -0.15 -5.43 10.05 22.27 0.22 -5.21 16 22 C -0.14 -5.29 10.05 22.27 0.22 -5.06 16 23 C -0.15 -6.76 9.70 22.27 0.22 -6.54 16 24 H 0.27 13.30 8.31 -92.71 -0.77 12.53 16 25 H 0.36 17.76 5.16 -89.69 -0.46 17.30 16 26 H 0.11 3.92 8.06 -2.91 -0.02 3.90 16 27 H 0.14 3.28 8.06 -2.91 -0.02 3.25 16 28 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.07 2.39 8.04 -2.39 -0.02 2.37 16 31 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 32 H 0.13 6.30 5.59 -2.91 -0.02 6.29 16 33 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 34 H 0.14 3.92 8.06 -2.91 -0.02 3.89 16 35 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 36 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -56.21 292.97 3.12 -53.09 By element: Atomic # 1 Polarization: 36.93 SS G_CDS: 0.59 Total: 37.52 kcal Atomic # 6 Polarization: -58.16 SS G_CDS: 2.82 Total: -55.34 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -2.31 Total: -79.63 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -56.21 3.12 -53.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698248272.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.274 kcal (2) G-P(sol) polarization free energy of solvation -56.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds