Wall clock time and date at job start Mon Mar 30 2020 05:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00098 * 2 1 4 4 H 1.48499 * 109.47025 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47232 * 60.00053 * 3 2 1 6 6 H 1.48499 * 109.46893 * 300.00160 * 3 2 1 7 7 C 1.37881 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00302 * 172.94593 * 7 2 1 9 9 C 1.50704 * 119.99699 * 352.94687 * 7 2 1 10 10 H 1.08997 * 109.47100 * 333.45749 * 9 7 2 11 11 N 1.46894 * 109.46907 * 213.45657 * 9 7 2 12 12 C 1.46903 * 111.00244 * 85.00380 * 11 9 7 13 13 H 1.09005 * 110.34368 * 34.29408 * 12 11 9 14 14 C 1.51100 * 110.38485 * 272.01045 * 12 11 9 15 15 C 1.30800 * 110.94681 * 257.61606 * 14 12 11 16 16 C 1.51098 * 111.14836 * 359.95691 * 15 14 12 17 17 C 1.54633 * 110.39156 * 156.58284 * 12 11 9 18 18 C 1.50704 * 109.47007 * 93.45784 * 9 7 2 19 19 C 1.38228 * 120.00059 * 73.67873 * 18 9 7 20 20 C 1.38235 * 119.99925 * 179.81136 * 19 18 9 21 21 C 1.38230 * 120.00133 * 0.39702 * 20 19 18 22 22 C 1.38235 * 119.99934 * 359.85927 * 21 20 19 23 23 C 1.38235 * 119.99790 * 253.95765 * 18 9 7 24 24 H 0.96993 * 119.99926 * 184.51963 * 1 2 3 25 25 H 1.00903 * 110.99937 * 208.95087 * 11 9 7 26 26 H 1.08000 * 124.44740 * 77.62367 * 14 12 11 27 27 H 1.07998 * 124.40316 * 179.97438 * 15 14 12 28 28 H 1.08999 * 110.38473 * 224.77971 * 16 15 14 29 29 H 1.08998 * 110.39176 * 102.40287 * 16 15 14 30 30 H 1.08996 * 111.04061 * 212.21021 * 17 12 11 31 31 H 1.09003 * 111.03595 * 336.14950 * 17 12 11 32 32 H 1.08001 * 119.99764 * 0.02562 * 19 18 9 33 33 H 1.08010 * 119.99805 * 180.23056 * 20 19 18 34 34 H 1.07998 * 120.00165 * 179.83711 * 21 20 19 35 35 H 1.08002 * 120.00091 * 179.97438 * 22 21 20 36 36 H 1.08000 * 120.00341 * 359.97277 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 1.2125 6 1 1.8904 2.3964 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0784 -1.1976 -0.1154 9 6 1.2596 -2.4943 0.1591 10 1 0.3357 -2.3184 0.7100 11 7 2.0956 -3.4501 0.8976 12 6 1.9533 -3.2634 2.3477 13 1 0.9348 -2.9621 2.5929 14 6 2.9410 -2.2337 2.8452 15 6 3.9589 -2.8077 3.4328 16 6 3.8161 -4.3119 3.4241 17 6 2.3257 -4.5635 3.0975 18 6 0.9344 -3.0572 -1.2005 19 6 1.9327 -3.6232 -1.9710 20 6 1.6337 -4.1430 -3.2165 21 6 0.3379 -4.0894 -3.6949 22 6 -0.6595 -3.5186 -2.9266 23 6 -0.3612 -3.0022 -1.6794 24 1 -0.4850 -0.8374 0.0662 25 1 1.8798 -4.3995 0.6325 26 1 2.8209 -1.1666 2.7303 27 1 4.7921 -2.2757 3.8675 28 1 4.0648 -4.7226 4.4027 29 1 4.4525 -4.7494 2.6549 30 1 1.7382 -4.6714 4.0092 31 1 2.2081 -5.4344 2.4527 32 1 2.9457 -3.6624 -1.5985 33 1 2.4130 -4.5886 -3.8171 34 1 0.1047 -4.4931 -4.6691 35 1 -1.6718 -3.4763 -3.3005 36 1 -1.1404 -2.5563 -1.0791 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698248275.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:38 Heat of formation + Delta-G solvation = 41.801586 kcal Electronic energy + Delta-G solvation = -17342.385539 eV Core-core repulsion = 14791.255712 eV Total energy + Delta-G solvation = -2551.129826 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.84000 -37.99022 -34.68101 -32.06974 -30.13558 -30.02841 -28.46121 -26.50283 -24.93702 -22.75848 -21.70315 -20.25875 -20.02822 -17.95283 -16.87059 -16.20116 -15.48274 -14.98781 -14.49706 -14.29922 -13.77161 -13.71060 -12.96147 -12.72579 -12.50618 -11.98450 -11.70336 -11.55708 -11.38814 -11.04711 -10.90856 -10.80059 -10.64437 -10.43156 -10.19038 -10.10633 -9.91163 -9.11884 -8.51436 -8.31156 -8.15321 -7.75082 -7.36902 -6.37664 -4.07642 2.17091 2.20583 2.95105 3.42146 3.44302 3.59239 4.46968 4.60261 5.04285 5.16853 5.24061 5.32001 5.57664 5.58969 5.66353 5.77514 5.83404 6.02216 6.08480 6.11868 6.24402 6.31921 6.38047 6.38558 6.40258 6.66462 6.72934 6.83264 6.92660 7.17123 7.20852 7.26297 7.54606 7.58862 7.77898 7.97052 8.01471 8.42978 8.61730 8.85808 9.59881 10.96546 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.014958 B = 0.010565 C = 0.007034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.452118 B = 2649.590434 C = 3979.931592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.019 3.981 3 Si 1.069 2.931 4 H -0.287 1.287 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.555 4.555 8 H 0.060 0.940 9 C 0.229 3.771 10 H 0.018 0.982 11 N -0.666 5.666 12 C 0.116 3.884 13 H 0.038 0.962 14 C -0.097 4.097 15 C -0.202 4.202 16 C -0.084 4.084 17 C -0.130 4.130 18 C -0.043 4.043 19 C -0.105 4.105 20 C -0.131 4.131 21 C -0.151 4.151 22 C -0.125 4.125 23 C -0.123 4.123 24 H 0.269 0.731 25 H 0.316 0.684 26 H 0.123 0.877 27 H 0.114 0.886 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.120 0.880 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.761 -8.081 1.753 8.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.186 4.186 3 Si 0.898 3.102 4 H -0.213 1.213 5 H -0.213 1.213 6 H -0.215 1.215 7 C -0.593 4.593 8 H 0.078 0.922 9 C 0.122 3.878 10 H 0.035 0.965 11 N -0.297 5.297 12 C 0.006 3.994 13 H 0.056 0.944 14 C -0.115 4.115 15 C -0.221 4.221 16 C -0.121 4.121 17 C -0.168 4.168 18 C -0.044 4.044 19 C -0.124 4.124 20 C -0.149 4.149 21 C -0.169 4.169 22 C -0.144 4.144 23 C -0.142 4.142 24 H 0.081 0.919 25 H 0.133 0.867 26 H 0.141 0.859 27 H 0.131 0.869 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.138 0.862 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.116 -6.052 1.654 7.005 hybrid contribution -0.706 -1.755 -0.066 1.893 sum 2.409 -7.807 1.587 8.323 Atomic orbital electron populations 1.70771 1.06872 1.30994 1.45816 1.25826 0.96470 1.02585 0.93736 0.83536 0.74775 0.74961 0.76965 1.21283 1.21350 1.21450 1.21823 0.95274 0.89676 1.52552 0.92210 1.18546 0.91929 0.91136 0.86187 0.96464 1.60794 1.59881 1.06409 1.02646 1.21184 0.96648 0.92620 0.88940 0.94386 1.23290 0.95471 0.99351 0.93411 1.23071 0.99306 0.95390 1.04323 1.21152 0.96148 0.94603 1.00178 1.22659 0.96698 0.97590 0.99809 1.20761 0.91907 0.92155 0.99618 1.20942 0.99451 0.98265 0.93698 1.21031 0.96088 1.01330 0.96480 1.20840 0.93665 1.02947 0.99449 1.20957 0.98479 0.99838 0.95082 1.21031 0.96740 1.00158 0.96283 0.91910 0.86681 0.85881 0.86856 0.92601 0.91306 0.91549 0.91349 0.86155 0.87387 0.87540 0.87405 0.87041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.20 13.62 55.43 0.76 -25.45 16 2 C 0.02 0.51 5.45 -17.82 -0.10 0.42 16 3 Si 1.07 24.98 29.91 -169.99 -5.08 19.90 16 4 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.55 -14.74 7.46 -34.44 -0.26 -14.99 16 8 H 0.06 1.67 7.82 -52.49 -0.41 1.26 16 9 C 0.23 5.44 2.01 -70.02 -0.14 5.30 16 10 H 0.02 0.46 5.67 -51.93 -0.29 0.16 16 11 N -0.67 -13.71 5.73 -102.28 -0.59 -14.30 16 12 C 0.12 2.21 3.21 -67.81 -0.22 1.99 16 13 H 0.04 0.79 7.47 -51.93 -0.39 0.40 16 14 C -0.10 -1.87 9.52 -35.78 -0.34 -2.21 16 15 C -0.20 -3.36 10.78 -35.78 -0.39 -3.74 16 16 C -0.08 -1.23 6.81 -26.83 -0.18 -1.41 16 17 C -0.13 -1.96 6.85 -25.01 -0.17 -2.13 16 18 C -0.04 -0.96 4.64 -104.62 -0.49 -1.45 16 19 C -0.11 -2.16 9.08 -39.59 -0.36 -2.52 16 20 C -0.13 -2.37 10.05 -39.59 -0.40 -2.77 16 21 C -0.15 -2.64 10.05 -39.59 -0.40 -3.04 16 22 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 23 C -0.12 -2.65 9.40 -39.58 -0.37 -3.02 16 24 H 0.27 7.65 5.55 -40.82 -0.23 7.42 16 25 H 0.32 5.99 7.50 -39.29 -0.29 5.69 16 26 H 0.12 2.61 7.94 -52.49 -0.42 2.19 16 27 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.96 7.57 -51.93 -0.39 0.57 16 32 H 0.12 2.48 7.91 -52.49 -0.42 2.06 16 33 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 34 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.11 2.44 7.21 -52.49 -0.38 2.06 16 LS Contribution 297.24 15.07 4.48 4.48 Total: -1.00 -28.52 297.24 -9.61 -38.13 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -4.97 Total: 9.57 kcal Atomic # 6 Polarization: -28.14 SS G_CDS: -4.20 Total: -32.34 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.17 Total: -39.75 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.08 Total: 19.90 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.52 -9.61 -38.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698248275.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.936 kcal (2) G-P(sol) polarization free energy of solvation -28.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds