Wall clock time and date at job start Mon Mar 30 2020 05:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00098 * 2 1 4 4 H 1.48499 * 109.47025 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47232 * 60.00053 * 3 2 1 6 6 H 1.48499 * 109.46893 * 300.00160 * 3 2 1 7 7 C 1.37881 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00302 * 172.94593 * 7 2 1 9 9 C 1.50704 * 119.99699 * 352.94687 * 7 2 1 10 10 H 1.08997 * 109.47100 * 333.45749 * 9 7 2 11 11 N 1.46894 * 109.46907 * 213.45657 * 9 7 2 12 12 C 1.46903 * 111.00244 * 85.00380 * 11 9 7 13 13 H 1.09005 * 110.34368 * 34.29408 * 12 11 9 14 14 C 1.51100 * 110.38485 * 272.01045 * 12 11 9 15 15 C 1.30800 * 110.94681 * 257.61606 * 14 12 11 16 16 C 1.51098 * 111.14836 * 359.95691 * 15 14 12 17 17 C 1.54633 * 110.39156 * 156.58284 * 12 11 9 18 18 C 1.50704 * 109.47007 * 93.45784 * 9 7 2 19 19 C 1.38228 * 120.00059 * 73.67873 * 18 9 7 20 20 C 1.38235 * 119.99925 * 179.81136 * 19 18 9 21 21 C 1.38230 * 120.00133 * 0.39702 * 20 19 18 22 22 C 1.38235 * 119.99934 * 359.85927 * 21 20 19 23 23 C 1.38235 * 119.99790 * 253.95765 * 18 9 7 24 24 H 0.96993 * 119.99926 * 184.51963 * 1 2 3 25 25 H 1.00903 * 110.99937 * 208.95087 * 11 9 7 26 26 H 1.08000 * 124.44740 * 77.62367 * 14 12 11 27 27 H 1.07998 * 124.40316 * 179.97438 * 15 14 12 28 28 H 1.08999 * 110.38473 * 224.77971 * 16 15 14 29 29 H 1.08998 * 110.39176 * 102.40287 * 16 15 14 30 30 H 1.08996 * 111.04061 * 212.21021 * 17 12 11 31 31 H 1.09003 * 111.03595 * 336.14950 * 17 12 11 32 32 H 1.08001 * 119.99764 * 0.02562 * 19 18 9 33 33 H 1.08010 * 119.99805 * 180.23056 * 20 19 18 34 34 H 1.07998 * 120.00165 * 179.83711 * 21 20 19 35 35 H 1.08002 * 120.00091 * 179.97438 * 22 21 20 36 36 H 1.08000 * 120.00341 * 359.97277 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 1.2125 6 1 1.8904 2.3964 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0784 -1.1976 -0.1154 9 6 1.2596 -2.4943 0.1591 10 1 0.3357 -2.3184 0.7100 11 7 2.0956 -3.4501 0.8976 12 6 1.9533 -3.2634 2.3477 13 1 0.9348 -2.9621 2.5929 14 6 2.9410 -2.2337 2.8452 15 6 3.9589 -2.8077 3.4328 16 6 3.8161 -4.3119 3.4241 17 6 2.3257 -4.5635 3.0975 18 6 0.9344 -3.0572 -1.2005 19 6 1.9327 -3.6232 -1.9710 20 6 1.6337 -4.1430 -3.2165 21 6 0.3379 -4.0894 -3.6949 22 6 -0.6595 -3.5186 -2.9266 23 6 -0.3612 -3.0022 -1.6794 24 1 -0.4850 -0.8374 0.0662 25 1 1.8798 -4.3995 0.6325 26 1 2.8209 -1.1666 2.7303 27 1 4.7921 -2.2757 3.8675 28 1 4.0648 -4.7226 4.4027 29 1 4.4525 -4.7494 2.6549 30 1 1.7382 -4.6714 4.0092 31 1 2.2081 -5.4344 2.4527 32 1 2.9457 -3.6624 -1.5985 33 1 2.4130 -4.5886 -3.8171 34 1 0.1047 -4.4931 -4.6691 35 1 -1.6718 -3.4763 -3.3005 36 1 -1.1404 -2.5563 -1.0791 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698248275.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:37 Heat of formation + Delta-G solvation = 26.148206 kcal Electronic energy + Delta-G solvation = -17343.064320 eV Core-core repulsion = 14791.255712 eV Total energy + Delta-G solvation = -2551.808608 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.41247 -39.43648 -36.41609 -33.98272 -31.69554 -31.57163 -29.81481 -28.13944 -26.72544 -24.52021 -23.24795 -21.94373 -21.40501 -19.40701 -18.84240 -17.72057 -16.93813 -16.55276 -16.11531 -15.85526 -15.67787 -15.18387 -14.66702 -14.35485 -14.07902 -13.56211 -13.32927 -13.10774 -12.82411 -12.63990 -12.51316 -12.26543 -12.11819 -12.01055 -11.92978 -11.65555 -11.57507 -11.03896 -10.52756 -9.78610 -9.69456 -9.38611 -9.16873 -8.50517 -6.23376 0.61703 0.66168 1.48092 1.49808 1.56432 1.72785 2.53324 3.01236 3.24898 3.56494 3.81303 3.88173 4.13610 4.22289 4.28782 4.32896 4.41078 4.50271 4.67514 4.74556 4.77254 4.84127 4.94422 4.97192 5.05244 5.17506 5.26521 5.30188 5.35364 5.68530 5.69876 5.76114 5.93066 5.97858 6.09633 6.14388 6.28609 6.51628 6.61280 6.91706 7.51102 8.80854 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.014958 B = 0.010565 C = 0.007034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.452118 B = 2649.590434 C = 3979.931592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.029 4.029 3 Si 1.108 2.892 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.550 4.550 8 H 0.041 0.959 9 C 0.238 3.762 10 H -0.020 1.020 11 N -0.662 5.662 12 C 0.110 3.890 13 H 0.006 0.994 14 C -0.146 4.146 15 C -0.169 4.169 16 C -0.081 4.081 17 C -0.119 4.119 18 C -0.069 4.069 19 C -0.117 4.117 20 C -0.124 4.124 21 C -0.139 4.139 22 C -0.126 4.126 23 C -0.147 4.147 24 H 0.259 0.741 25 H 0.325 0.675 26 H 0.090 0.910 27 H 0.135 0.865 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.145 0.855 34 H 0.150 0.850 35 H 0.135 0.865 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.340 -10.059 0.802 10.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.228 4.228 3 Si 0.932 3.068 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.210 1.210 7 C -0.589 4.589 8 H 0.060 0.940 9 C 0.130 3.870 10 H -0.002 1.002 11 N -0.293 5.293 12 C 0.000 4.000 13 H 0.024 0.976 14 C -0.165 4.165 15 C -0.187 4.187 16 C -0.118 4.118 17 C -0.157 4.157 18 C -0.070 4.070 19 C -0.136 4.136 20 C -0.142 4.142 21 C -0.157 4.157 22 C -0.144 4.144 23 C -0.166 4.166 24 H 0.070 0.930 25 H 0.143 0.857 26 H 0.108 0.892 27 H 0.153 0.847 28 H 0.108 0.892 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.133 0.867 33 H 0.163 0.837 34 H 0.167 0.833 35 H 0.153 0.847 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.706 -8.055 0.709 9.355 hybrid contribution -1.168 -1.261 0.226 1.733 sum 3.538 -9.316 0.935 10.009 Atomic orbital electron populations 1.70856 1.07666 1.30447 1.48658 1.26976 0.96593 1.05738 0.93506 0.83036 0.74473 0.72122 0.77197 1.19915 1.20670 1.21048 1.21902 0.94291 0.91243 1.51482 0.94019 1.18266 0.90234 0.91237 0.87303 1.00246 1.60689 1.58669 1.06301 1.03629 1.21288 0.95119 0.95175 0.88378 0.97627 1.23105 0.97907 0.98063 0.97454 1.23472 0.97856 0.96925 1.00496 1.21219 0.95495 0.92777 1.02289 1.22642 0.97490 0.95456 1.00086 1.20631 0.93100 0.94314 0.98961 1.20973 0.98606 0.99025 0.94948 1.21431 0.97530 0.99816 0.95377 1.21329 0.92757 1.01007 1.00608 1.21289 1.00460 0.98816 0.93817 1.21049 0.96123 1.01626 0.97836 0.93015 0.85719 0.89166 0.84731 0.89157 0.90600 0.89854 0.89969 0.86717 0.83710 0.83256 0.84750 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.17 13.62 21.45 0.29 -56.88 16 2 C -0.03 -1.69 5.45 84.66 0.46 -1.23 16 3 Si 1.11 51.98 29.91 68.60 2.05 54.03 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 7 C -0.55 -30.75 7.46 25.60 0.19 -30.56 16 8 H 0.04 2.43 7.82 -2.91 -0.02 2.40 16 9 C 0.24 11.97 2.01 43.43 0.09 12.05 16 10 H -0.02 -1.14 5.67 -2.39 -0.01 -1.15 16 11 N -0.66 -28.24 5.73 -477.50 -2.74 -30.98 16 12 C 0.11 4.35 3.21 44.85 0.14 4.50 16 13 H 0.01 0.26 7.47 -2.38 -0.02 0.24 16 14 C -0.15 -5.87 9.52 25.98 0.25 -5.63 16 15 C -0.17 -5.35 10.78 25.98 0.28 -5.07 16 16 C -0.08 -2.12 6.81 30.53 0.21 -1.91 16 17 C -0.12 -3.41 6.85 31.71 0.22 -3.19 16 18 C -0.07 -3.18 4.64 -19.87 -0.09 -3.27 16 19 C -0.12 -4.75 9.08 22.27 0.20 -4.55 16 20 C -0.12 -4.09 10.05 22.27 0.22 -3.87 16 21 C -0.14 -4.35 10.05 22.27 0.22 -4.13 16 22 C -0.13 -4.51 10.05 22.27 0.22 -4.29 16 23 C -0.15 -6.53 9.40 22.27 0.21 -6.32 16 24 H 0.26 15.87 5.55 -92.71 -0.51 15.36 16 25 H 0.32 12.54 7.50 -89.69 -0.67 11.87 16 26 H 0.09 4.14 7.94 -2.91 -0.02 4.11 16 27 H 0.13 3.66 8.06 -2.91 -0.02 3.64 16 28 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.08 2.14 7.57 -2.39 -0.02 2.12 16 32 H 0.11 4.70 7.91 -2.91 -0.02 4.68 16 33 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 34 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 35 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 36 H 0.09 4.26 7.21 -2.91 -0.02 4.24 16 Total: -1.00 -65.69 297.24 3.07 -62.62 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: 0.64 Total: 28.65 kcal Atomic # 6 Polarization: -60.28 SS G_CDS: 2.83 Total: -57.45 kcal Atomic # 7 Polarization: -85.41 SS G_CDS: -2.45 Total: -87.86 kcal Atomic # 14 Polarization: 51.98 SS G_CDS: 2.05 Total: 54.03 kcal Total: -65.69 3.07 -62.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698248275.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.767 kcal (2) G-P(sol) polarization free energy of solvation -65.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds