Wall clock time and date at job start Mon Mar 30 2020 05:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 119.99972 * 2 1 4 4 H 1.48504 * 109.46778 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47082 * 299.99808 * 3 2 1 6 6 H 1.48494 * 109.47168 * 59.99858 * 3 2 1 7 7 C 1.37875 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00666 * 174.45722 * 7 2 1 9 9 C 1.50697 * 119.99890 * 354.18560 * 7 2 1 10 10 H 1.09006 * 109.47496 * 33.76322 * 9 7 2 11 11 N 1.46907 * 109.47379 * 153.76134 * 9 7 2 12 12 C 1.46900 * 110.99814 * 275.00165 * 11 9 7 13 13 H 1.09003 * 110.34510 * 324.16047 * 12 11 9 14 14 C 1.51102 * 110.38763 * 86.45450 * 12 11 9 15 15 C 1.30525 * 111.10720 * 102.37401 * 14 12 11 16 16 C 1.51107 * 111.09995 * 359.97438 * 15 14 12 17 17 C 1.54632 * 104.72622 * 16.44082 * 16 15 14 18 18 C 1.50692 * 109.47366 * 273.76364 * 9 7 2 19 19 C 1.38237 * 119.99902 * 286.02413 * 18 9 7 20 20 C 1.38239 * 120.00324 * 179.76274 * 19 18 9 21 21 C 1.38239 * 119.99609 * 0.50759 * 20 19 18 22 22 C 1.38235 * 120.00066 * 359.74747 * 21 20 19 23 23 C 1.38233 * 120.00641 * 106.29698 * 18 9 7 24 24 H 0.97000 * 120.00404 * 0.02562 * 1 2 3 25 25 H 1.00898 * 111.00031 * 38.95325 * 11 9 7 26 26 H 1.08006 * 124.44418 * 282.39047 * 14 12 11 27 27 H 1.07995 * 124.44849 * 180.02562 * 15 14 12 28 28 H 1.09002 * 110.38452 * 135.25331 * 16 15 14 29 29 H 1.08997 * 110.38588 * 257.51203 * 16 15 14 30 30 H 1.09001 * 111.03475 * 217.33300 * 17 16 15 31 31 H 1.08996 * 111.03575 * 93.40215 * 17 16 15 32 32 H 1.08001 * 119.99919 * 359.97438 * 19 18 9 33 33 H 1.07991 * 120.00320 * 180.23073 * 20 19 18 34 34 H 1.07995 * 119.99989 * 179.71593 * 21 20 19 35 35 H 1.08001 * 120.00295 * 179.97438 * 22 21 20 36 36 H 1.08006 * 119.99641 * 0.02562 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0807 -1.1963 -0.0898 9 6 1.2568 -2.4957 0.1333 10 1 0.2884 -2.4105 -0.3598 11 7 2.0333 -3.5728 -0.4953 12 6 1.7675 -3.6400 -1.9385 13 1 0.7232 -3.4037 -2.1430 14 6 2.6776 -2.6934 -2.6860 15 6 3.6616 -3.3368 -3.2529 16 6 3.5721 -4.8199 -2.9775 17 6 2.1228 -5.0416 -2.4861 18 6 1.0514 -2.8104 1.5926 19 6 2.1136 -3.2481 2.3615 20 6 1.9264 -3.5322 3.7013 21 6 0.6745 -3.3886 4.2699 22 6 -0.3888 -2.9559 3.4998 23 6 -0.2003 -2.6669 2.1612 24 1 -0.4851 0.8400 -0.0004 25 1 3.0195 -3.4608 -0.3142 26 1 2.5330 -1.6246 -2.7435 27 1 4.4382 -2.8704 -3.8409 28 1 3.7547 -5.3872 -3.8901 29 1 4.2851 -5.1061 -2.2043 30 1 2.0881 -5.7912 -1.6954 31 1 1.4673 -5.3164 -3.3124 32 1 3.0906 -3.3649 1.9161 33 1 2.7570 -3.8706 4.3028 34 1 0.5272 -3.6148 5.3155 35 1 -1.3670 -2.8441 3.9439 36 1 -1.0313 -2.3295 1.5594 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698248278.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:40 Heat of formation + Delta-G solvation = 39.074671 kcal Electronic energy + Delta-G solvation = -17307.491685 eV Core-core repulsion = 14756.243610 eV Total energy + Delta-G solvation = -2551.248074 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.70698 -37.91393 -34.43988 -31.97246 -29.99672 -29.85160 -28.42911 -26.68490 -25.11771 -22.71619 -21.53214 -19.86689 -19.75430 -18.23007 -16.63646 -16.16162 -15.40913 -15.06172 -14.50279 -14.13632 -13.78521 -13.31785 -12.84993 -12.43935 -12.29441 -11.75251 -11.72697 -11.35612 -11.25825 -11.11608 -11.03007 -10.85614 -10.77466 -10.44972 -10.24558 -9.98394 -9.86490 -9.48103 -8.62679 -8.50575 -7.95574 -7.65413 -7.29159 -6.13054 -4.21566 2.38356 2.43827 2.86352 3.21016 3.30435 3.33316 4.31908 4.81557 5.16320 5.18686 5.20836 5.45846 5.71594 5.72756 5.81743 5.88864 5.93086 6.08949 6.14245 6.34765 6.37916 6.45693 6.50095 6.58768 6.72260 6.77419 6.92607 7.07921 7.12719 7.22797 7.39381 7.48077 7.51284 7.72087 7.77660 8.02541 8.08070 8.16369 8.57260 8.89472 9.43912 10.89453 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.015076 B = 0.010455 C = 0.007055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.820912 B = 2677.585981 C = 3968.007027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.074 3.926 3 Si 0.885 3.115 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.533 4.533 8 H 0.058 0.942 9 C 0.230 3.770 10 H 0.068 0.932 11 N -0.673 5.673 12 C 0.117 3.883 13 H 0.076 0.924 14 C -0.148 4.148 15 C -0.200 4.200 16 C -0.094 4.094 17 C -0.120 4.120 18 C -0.008 4.008 19 C -0.111 4.111 20 C -0.134 4.134 21 C -0.156 4.156 22 C -0.131 4.131 23 C -0.110 4.110 24 H 0.263 0.737 25 H 0.329 0.671 26 H 0.124 0.876 27 H 0.111 0.889 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.842 -6.735 -0.828 7.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.130 4.130 3 Si 0.713 3.287 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.571 4.571 8 H 0.076 0.924 9 C 0.122 3.878 10 H 0.086 0.914 11 N -0.300 5.300 12 C 0.006 3.994 13 H 0.094 0.906 14 C -0.167 4.167 15 C -0.219 4.219 16 C -0.131 4.131 17 C -0.158 4.158 18 C -0.010 4.010 19 C -0.130 4.130 20 C -0.152 4.152 21 C -0.174 4.174 22 C -0.149 4.149 23 C -0.129 4.129 24 H 0.073 0.927 25 H 0.145 0.855 26 H 0.142 0.858 27 H 0.129 0.871 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.126 0.874 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.188 -7.120 -0.653 7.477 hybrid contribution 1.040 2.157 -0.127 2.398 sum 3.228 -4.963 -0.779 5.972 Atomic orbital electron populations 1.69892 1.05884 1.26886 1.48917 1.24921 0.94786 0.99086 0.94216 0.86647 0.80365 0.84022 0.77695 1.19729 1.21010 1.20849 1.21631 0.93393 0.91013 1.51085 0.92420 1.18419 0.95753 0.86715 0.86878 0.91408 1.61053 1.12142 1.48874 1.07933 1.21212 0.98426 0.91392 0.88335 0.90593 1.24118 0.96928 1.00433 0.95239 1.23122 1.00093 0.95828 1.02894 1.21288 0.97607 0.94274 0.99945 1.22500 0.95380 0.98008 0.99883 1.20435 0.91568 0.90659 0.98299 1.20812 0.98818 1.00219 0.93126 1.20934 0.96516 1.02286 0.95485 1.20771 0.93681 1.04244 0.98696 1.20968 0.97954 1.01256 0.94712 1.21050 0.97753 0.99607 0.94493 0.92707 0.85459 0.85786 0.87098 0.92421 0.91532 0.90405 0.91860 0.87392 0.87810 0.87921 0.87728 0.86419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.82 12.90 55.43 0.71 -23.11 16 2 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 3 Si 0.88 20.72 29.54 -169.99 -5.02 15.70 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.53 -13.48 7.15 -34.44 -0.25 -13.72 16 8 H 0.06 1.48 7.70 -52.48 -0.40 1.08 16 9 C 0.23 5.38 2.20 -70.02 -0.15 5.23 16 10 H 0.07 1.78 6.61 -51.93 -0.34 1.43 16 11 N -0.67 -13.62 5.67 -102.28 -0.58 -14.20 16 12 C 0.12 2.17 3.21 -67.82 -0.22 1.96 16 13 H 0.08 1.53 7.50 -51.93 -0.39 1.14 16 14 C -0.15 -2.71 9.17 -35.70 -0.33 -3.04 16 15 C -0.20 -3.17 10.78 -35.69 -0.38 -3.56 16 16 C -0.09 -1.34 6.81 -26.83 -0.18 -1.52 16 17 C -0.12 -1.83 6.90 -25.02 -0.17 -2.01 16 18 C -0.01 -0.19 4.93 -104.63 -0.52 -0.70 16 19 C -0.11 -2.32 9.27 -39.58 -0.37 -2.69 16 20 C -0.13 -2.51 10.05 -39.58 -0.40 -2.91 16 21 C -0.16 -2.84 10.05 -39.58 -0.40 -3.24 16 22 C -0.13 -2.54 10.05 -39.58 -0.40 -2.94 16 23 C -0.11 -2.44 9.67 -39.58 -0.38 -2.83 16 24 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 25 H 0.33 6.65 7.60 -39.29 -0.30 6.35 16 26 H 0.12 2.52 7.89 -52.48 -0.41 2.10 16 27 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.08 1.19 8.08 -51.93 -0.42 0.77 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.11 2.15 7.46 -52.49 -0.39 1.76 16 33 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.12 2.70 7.99 -52.48 -0.42 2.28 16 LS Contribution 300.89 15.07 4.53 4.53 Total: -1.00 -26.30 300.89 -9.77 -36.07 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -5.17 Total: 11.12 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: -4.24 Total: -30.11 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.14 Total: -37.31 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -26.30 -9.77 -36.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698248278.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.141 kcal (2) G-P(sol) polarization free energy of solvation -26.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds