Wall clock time and date at job start Mon Mar 30 2020 05:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 119.99972 * 2 1 4 4 H 1.48504 * 109.46778 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47082 * 299.99808 * 3 2 1 6 6 H 1.48494 * 109.47168 * 59.99858 * 3 2 1 7 7 C 1.37875 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00666 * 174.45722 * 7 2 1 9 9 C 1.50697 * 119.99890 * 354.18560 * 7 2 1 10 10 H 1.09006 * 109.47496 * 33.76322 * 9 7 2 11 11 N 1.46907 * 109.47379 * 153.76134 * 9 7 2 12 12 C 1.46900 * 110.99814 * 275.00165 * 11 9 7 13 13 H 1.09003 * 110.34510 * 324.16047 * 12 11 9 14 14 C 1.51102 * 110.38763 * 86.45450 * 12 11 9 15 15 C 1.30525 * 111.10720 * 102.37401 * 14 12 11 16 16 C 1.51107 * 111.09995 * 359.97438 * 15 14 12 17 17 C 1.54632 * 104.72622 * 16.44082 * 16 15 14 18 18 C 1.50692 * 109.47366 * 273.76364 * 9 7 2 19 19 C 1.38237 * 119.99902 * 286.02413 * 18 9 7 20 20 C 1.38239 * 120.00324 * 179.76274 * 19 18 9 21 21 C 1.38239 * 119.99609 * 0.50759 * 20 19 18 22 22 C 1.38235 * 120.00066 * 359.74747 * 21 20 19 23 23 C 1.38233 * 120.00641 * 106.29698 * 18 9 7 24 24 H 0.97000 * 120.00404 * 0.02562 * 1 2 3 25 25 H 1.00898 * 111.00031 * 38.95325 * 11 9 7 26 26 H 1.08006 * 124.44418 * 282.39047 * 14 12 11 27 27 H 1.07995 * 124.44849 * 180.02562 * 15 14 12 28 28 H 1.09002 * 110.38452 * 135.25331 * 16 15 14 29 29 H 1.08997 * 110.38588 * 257.51203 * 16 15 14 30 30 H 1.09001 * 111.03475 * 217.33300 * 17 16 15 31 31 H 1.08996 * 111.03575 * 93.40215 * 17 16 15 32 32 H 1.08001 * 119.99919 * 359.97438 * 19 18 9 33 33 H 1.07991 * 120.00320 * 180.23073 * 20 19 18 34 34 H 1.07995 * 119.99989 * 179.71593 * 21 20 19 35 35 H 1.08001 * 120.00295 * 179.97438 * 22 21 20 36 36 H 1.08006 * 119.99641 * 0.02562 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0807 -1.1963 -0.0898 9 6 1.2568 -2.4957 0.1333 10 1 0.2884 -2.4105 -0.3598 11 7 2.0333 -3.5728 -0.4953 12 6 1.7675 -3.6400 -1.9385 13 1 0.7232 -3.4037 -2.1430 14 6 2.6776 -2.6934 -2.6860 15 6 3.6616 -3.3368 -3.2529 16 6 3.5721 -4.8199 -2.9775 17 6 2.1228 -5.0416 -2.4861 18 6 1.0514 -2.8104 1.5926 19 6 2.1136 -3.2481 2.3615 20 6 1.9264 -3.5322 3.7013 21 6 0.6745 -3.3886 4.2699 22 6 -0.3888 -2.9559 3.4998 23 6 -0.2003 -2.6669 2.1612 24 1 -0.4851 0.8400 -0.0004 25 1 3.0195 -3.4608 -0.3142 26 1 2.5330 -1.6246 -2.7435 27 1 4.4382 -2.8704 -3.8409 28 1 3.7547 -5.3872 -3.8901 29 1 4.2851 -5.1061 -2.2043 30 1 2.0881 -5.7912 -1.6954 31 1 1.4673 -5.3164 -3.3124 32 1 3.0906 -3.3649 1.9161 33 1 2.7570 -3.8706 4.3028 34 1 0.5272 -3.6148 5.3155 35 1 -1.3670 -2.8441 3.9439 36 1 -1.0313 -2.3295 1.5594 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698248278.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:40 Heat of formation + Delta-G solvation = 25.749363 kcal Electronic energy + Delta-G solvation = -17308.069513 eV Core-core repulsion = 14756.243610 eV Total energy + Delta-G solvation = -2551.825903 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.24130 -39.38492 -36.14310 -33.85999 -31.56643 -31.40326 -29.75875 -28.36046 -26.78643 -24.43606 -23.09937 -21.51432 -21.14134 -19.67741 -18.53623 -17.66927 -16.96604 -16.71720 -16.12032 -15.69307 -15.29986 -15.04945 -14.39832 -14.00596 -13.82560 -13.47507 -13.29419 -13.05365 -12.91930 -12.71105 -12.62177 -12.32895 -12.12005 -12.03392 -11.91916 -11.62407 -11.48652 -11.25982 -10.58966 -9.94628 -9.52931 -9.25192 -8.99210 -8.10293 -6.26157 0.79734 0.86666 1.32027 1.36117 1.44430 1.48002 2.36297 3.10646 3.28099 3.70266 3.88190 4.07560 4.29377 4.35042 4.42935 4.48153 4.56864 4.71188 4.74447 4.89766 4.95542 5.02130 5.07383 5.15354 5.23131 5.36494 5.42417 5.49537 5.50864 5.66537 5.75122 5.84009 5.92837 6.02747 6.09209 6.23635 6.35873 6.48548 6.86290 6.96244 7.41075 8.88620 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.015076 B = 0.010455 C = 0.007055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.820912 B = 2677.585981 C = 3968.007027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.027 3.973 3 Si 0.939 3.061 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.285 1.285 7 C -0.528 4.528 8 H 0.051 0.949 9 C 0.241 3.759 10 H 0.026 0.974 11 N -0.664 5.664 12 C 0.111 3.889 13 H 0.044 0.956 14 C -0.188 4.188 15 C -0.166 4.166 16 C -0.090 4.090 17 C -0.110 4.110 18 C -0.035 4.035 19 C -0.124 4.124 20 C -0.129 4.129 21 C -0.148 4.148 22 C -0.132 4.132 23 C -0.138 4.138 24 H 0.261 0.739 25 H 0.330 0.670 26 H 0.093 0.907 27 H 0.133 0.867 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.129 0.871 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.809 -8.194 0.166 9.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.174 4.174 3 Si 0.765 3.235 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.211 1.211 7 C -0.567 4.567 8 H 0.069 0.931 9 C 0.132 3.868 10 H 0.044 0.956 11 N -0.291 5.291 12 C 0.001 3.999 13 H 0.062 0.938 14 C -0.208 4.208 15 C -0.185 4.185 16 C -0.127 4.127 17 C -0.148 4.148 18 C -0.037 4.037 19 C -0.142 4.142 20 C -0.147 4.147 21 C -0.166 4.166 22 C -0.150 4.150 23 C -0.156 4.156 24 H 0.070 0.930 25 H 0.146 0.854 26 H 0.111 0.889 27 H 0.150 0.850 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.130 0.870 33 H 0.158 0.842 34 H 0.161 0.839 35 H 0.147 0.853 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.167 -8.590 0.330 9.553 hybrid contribution 0.437 2.531 -0.444 2.606 sum 4.604 -6.059 -0.115 7.610 Atomic orbital electron populations 1.70021 1.06993 1.27134 1.50549 1.25560 0.95429 1.01811 0.94559 0.85801 0.79423 0.80849 0.77380 1.19222 1.20837 1.21074 1.21785 0.92991 0.92031 1.49908 0.93080 1.18100 0.93831 0.87058 0.87807 0.95615 1.61066 1.11677 1.47274 1.09104 1.21292 0.96914 0.94048 0.87653 0.93796 1.23831 0.99180 0.99118 0.98673 1.23466 0.98398 0.96821 0.99835 1.21333 0.96642 0.93040 1.01647 1.22449 0.96718 0.95361 1.00271 1.20410 0.92729 0.92695 0.97839 1.20935 0.98300 1.00657 0.94333 1.21352 0.98001 1.00670 0.94666 1.21235 0.92776 1.02193 1.00397 1.21265 0.99874 1.00371 0.93506 1.21030 0.97103 1.01501 0.96006 0.93012 0.85353 0.88854 0.84969 0.89301 0.90405 0.90135 0.90402 0.86986 0.84168 0.83882 0.85273 0.88958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.90 12.90 21.45 0.28 -51.63 16 2 C 0.03 1.49 5.45 84.66 0.46 1.95 16 3 Si 0.94 43.66 29.54 68.60 2.03 45.69 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 7 C -0.53 -27.84 7.15 25.60 0.18 -27.66 16 8 H 0.05 2.70 7.70 -2.91 -0.02 2.68 16 9 C 0.24 11.89 2.20 43.42 0.10 11.99 16 10 H 0.03 1.47 6.61 -2.38 -0.02 1.46 16 11 N -0.66 -27.77 5.67 -477.52 -2.71 -30.48 16 12 C 0.11 4.29 3.21 44.85 0.14 4.43 16 13 H 0.04 1.93 7.50 -2.39 -0.02 1.91 16 14 C -0.19 -7.09 9.17 26.26 0.24 -6.85 16 15 C -0.17 -4.96 10.78 26.27 0.28 -4.68 16 16 C -0.09 -2.27 6.81 30.53 0.21 -2.07 16 17 C -0.11 -3.22 6.90 31.70 0.22 -3.01 16 18 C -0.04 -1.66 4.93 -19.87 -0.10 -1.76 16 19 C -0.12 -5.06 9.27 22.27 0.21 -4.86 16 20 C -0.13 -4.44 10.05 22.27 0.22 -4.21 16 21 C -0.15 -4.90 10.05 22.27 0.22 -4.68 16 22 C -0.13 -4.97 10.05 22.27 0.22 -4.75 16 23 C -0.14 -6.30 9.67 22.27 0.22 -6.08 16 24 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 25 H 0.33 13.49 7.60 -89.70 -0.68 12.81 16 26 H 0.09 4.05 7.89 -2.91 -0.02 4.02 16 27 H 0.13 3.40 8.06 -2.91 -0.02 3.38 16 28 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.08 2.33 8.08 -2.39 -0.02 2.31 16 31 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.11 4.38 7.46 -2.91 -0.02 4.35 16 33 H 0.14 3.78 8.06 -2.92 -0.02 3.76 16 34 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 35 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 36 H 0.09 4.57 7.99 -2.91 -0.02 4.55 16 Total: -1.00 -59.50 300.89 2.80 -56.70 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: 0.37 Total: 31.95 kcal Atomic # 6 Polarization: -55.06 SS G_CDS: 2.83 Total: -52.23 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -2.43 Total: -82.11 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -59.50 2.80 -56.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698248278.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.451 kcal (2) G-P(sol) polarization free energy of solvation -59.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds