Wall clock time and date at job start Mon Mar 30 2020 05:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00002 * 2 1 4 4 H 1.48497 * 109.46908 * 265.55895 * 3 2 1 5 5 H 1.48502 * 109.46802 * 25.55913 * 3 2 1 6 6 H 1.48504 * 109.46902 * 145.55903 * 3 2 1 7 7 C 1.37885 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99706 * 352.80279 * 7 2 1 9 9 C 1.50699 * 119.99954 * 172.79552 * 7 2 1 10 10 H 1.09003 * 109.47009 * 5.03225 * 9 7 2 11 11 N 1.46898 * 109.46926 * 125.03373 * 9 7 2 12 12 C 1.46900 * 110.99970 * 275.00104 * 11 9 7 13 13 H 1.08998 * 110.34839 * 35.83292 * 12 11 9 14 14 C 1.51110 * 110.38721 * 273.54666 * 12 11 9 15 15 C 1.30523 * 111.10374 * 257.75972 * 14 12 11 16 16 C 1.51103 * 111.10632 * 359.60731 * 15 14 12 17 17 C 1.54631 * 110.48179 * 158.18931 * 12 11 9 18 18 C 1.50700 * 109.47171 * 245.03720 * 9 7 2 19 19 C 1.38233 * 119.99626 * 285.65490 * 18 9 7 20 20 C 1.38239 * 119.99942 * 179.79081 * 19 18 9 21 21 C 1.38233 * 119.99672 * 0.44137 * 20 19 18 22 22 C 1.38238 * 120.00350 * 359.80738 * 21 20 19 23 23 C 1.38232 * 119.99852 * 359.97438 * 22 21 20 24 24 H 0.96997 * 119.99835 * 359.97438 * 1 2 3 25 25 H 1.00895 * 111.00248 * 38.95698 * 11 9 7 26 26 H 1.07995 * 124.44694 * 77.48662 * 14 12 11 27 27 H 1.07999 * 124.44568 * 179.73955 * 15 14 12 28 28 H 1.08995 * 110.53033 * 225.02320 * 16 15 14 29 29 H 1.09007 * 110.28714 * 102.72855 * 16 15 14 30 30 H 1.09003 * 111.03589 * 212.25471 * 17 12 11 31 31 H 1.08992 * 111.03880 * 336.15741 * 17 12 11 32 32 H 1.08003 * 120.00197 * 359.97438 * 19 18 9 33 33 H 1.08002 * 120.00179 * 180.26879 * 20 19 18 34 34 H 1.08008 * 119.99803 * 179.84055 * 21 20 19 35 35 H 1.07999 * 119.99912 * 180.02562 * 22 21 20 36 36 H 1.07999 * 120.00496 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5905 1.9922 -1.3959 5 1 1.4027 2.6779 0.6041 6 1 3.4966 1.4690 0.7919 7 6 2.0046 -1.1941 0.0005 8 1 1.4709 -2.1257 0.1181 9 6 3.5027 -1.1993 -0.1631 10 1 3.8701 -0.1732 -0.1778 11 7 4.1153 -1.9229 0.9590 12 6 4.3077 -1.0366 2.1146 13 1 3.4853 -0.3250 2.1876 14 6 5.6266 -0.3072 2.0047 15 6 6.5268 -0.8442 2.7824 16 6 5.9559 -2.0154 3.5478 17 6 4.4227 -1.8626 3.4167 18 6 3.8642 -1.8808 -1.4577 19 6 3.7732 -3.2561 -1.5636 20 6 4.1007 -3.8809 -2.7525 21 6 4.5279 -3.1312 -3.8324 22 6 4.6238 -1.7564 -3.7249 23 6 4.2920 -1.1312 -2.5375 24 1 -0.4850 0.8400 0.0004 25 1 3.5665 -2.7312 1.2107 26 1 5.8025 0.5437 1.3634 27 1 7.5454 -0.4959 2.8692 28 1 6.2540 -1.9694 4.5951 29 1 6.2834 -2.9544 3.1014 30 1 4.0102 -1.3157 4.2646 31 1 3.9400 -2.8337 3.3079 32 1 3.4434 -3.8422 -0.7185 33 1 4.0254 -4.9550 -2.8366 34 1 4.7862 -3.6196 -4.7605 35 1 4.9571 -1.1707 -4.5688 36 1 4.3673 -0.0571 -2.4533 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698248281.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:43 Heat of formation + Delta-G solvation = 42.685107 kcal Electronic energy + Delta-G solvation = -17333.151309 eV Core-core repulsion = 14782.059795 eV Total energy + Delta-G solvation = -2551.091514 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.83960 -38.05247 -34.65066 -32.09493 -30.35228 -30.07646 -28.56534 -27.04003 -25.24496 -22.64004 -21.81174 -20.15861 -19.83466 -18.00208 -17.13943 -16.27681 -15.58554 -15.11745 -14.67295 -14.40468 -13.97509 -13.43680 -12.89964 -12.71654 -12.59627 -12.14491 -11.93685 -11.71687 -11.46498 -11.19473 -11.08621 -10.95452 -10.84583 -10.50259 -10.37274 -9.98899 -9.85786 -9.42643 -8.81042 -8.58193 -8.18413 -7.87901 -7.29534 -6.26395 -4.27725 2.14745 2.21730 2.73357 3.16993 3.24614 3.25955 4.25095 4.57503 5.03263 5.09046 5.13866 5.28617 5.56200 5.57610 5.63523 5.70178 5.75726 5.94316 6.05001 6.10800 6.26566 6.28257 6.37119 6.41092 6.47103 6.53261 6.58672 6.78671 6.87130 6.93752 7.17625 7.27050 7.36066 7.42223 7.56052 7.80070 7.98085 8.27009 8.49770 8.78718 9.36129 10.86012 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.014937 B = 0.010966 C = 0.007720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.051276 B = 2552.732582 C = 3626.097492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.081 3.919 3 Si 0.866 3.134 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.258 1.258 7 C -0.535 4.535 8 H 0.077 0.923 9 C 0.205 3.795 10 H 0.051 0.949 11 N -0.673 5.673 12 C 0.108 3.892 13 H 0.055 0.945 14 C -0.133 4.133 15 C -0.178 4.178 16 C -0.088 4.088 17 C -0.124 4.124 18 C -0.013 4.013 19 C -0.103 4.103 20 C -0.125 4.125 21 C -0.151 4.151 22 C -0.123 4.123 23 C -0.134 4.134 24 H 0.266 0.734 25 H 0.335 0.665 26 H 0.111 0.889 27 H 0.114 0.886 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.206 -2.867 1.403 10.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.124 4.124 3 Si 0.693 3.307 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.182 1.182 7 C -0.574 4.574 8 H 0.095 0.905 9 C 0.097 3.903 10 H 0.069 0.931 11 N -0.303 5.303 12 C -0.002 4.002 13 H 0.073 0.927 14 C -0.152 4.152 15 C -0.197 4.197 16 C -0.125 4.125 17 C -0.162 4.162 18 C -0.014 4.014 19 C -0.121 4.121 20 C -0.144 4.144 21 C -0.170 4.170 22 C -0.141 4.141 23 C -0.152 4.152 24 H 0.076 0.924 25 H 0.153 0.847 26 H 0.129 0.871 27 H 0.132 0.868 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.132 0.868 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 10.650 -2.673 1.183 11.043 hybrid contribution -0.674 1.169 0.039 1.350 sum 9.975 -1.504 1.222 10.162 Atomic orbital electron populations 1.69914 1.06349 1.27292 1.48692 1.25103 0.94701 0.98969 0.93643 0.87047 0.80559 0.83880 0.79239 1.19849 1.21300 1.18233 1.21522 0.90018 0.95063 1.50770 0.90498 1.18672 0.93366 0.93014 0.85254 0.93090 1.60985 1.54044 1.09196 1.06125 1.21121 0.94796 0.94222 0.90078 0.92731 1.23272 0.96149 0.98173 0.97561 1.23077 0.98350 0.97866 1.00388 1.21232 0.95057 0.97585 0.98675 1.22568 0.95853 1.00351 0.97383 1.20280 0.91275 0.93518 0.96362 1.20809 0.99886 0.94551 0.96896 1.21017 1.00603 0.98941 0.93794 1.20831 1.03691 0.94108 0.98338 1.20920 1.01260 0.94672 0.97219 1.20935 1.01420 0.99255 0.93625 0.92382 0.84705 0.87130 0.86794 0.92334 0.90984 0.91462 0.90839 0.86791 0.87288 0.87447 0.87330 0.87435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 13.96 55.43 0.77 -25.37 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 3 Si 0.87 20.68 26.54 -169.99 -4.51 16.17 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.26 -5.82 6.25 56.52 0.35 -5.47 16 7 C -0.54 -14.18 8.51 -34.44 -0.29 -14.47 16 8 H 0.08 2.23 8.06 -52.48 -0.42 1.81 16 9 C 0.20 4.66 2.01 -70.02 -0.14 4.52 16 10 H 0.05 1.20 4.05 -51.93 -0.21 0.99 16 11 N -0.67 -13.53 5.66 -102.28 -0.58 -14.11 16 12 C 0.11 2.04 3.00 -67.81 -0.20 1.84 16 13 H 0.05 1.19 6.77 -51.93 -0.35 0.84 16 14 C -0.13 -2.35 10.18 -35.69 -0.36 -2.71 16 15 C -0.18 -2.68 10.78 -35.70 -0.38 -3.07 16 16 C -0.09 -1.23 6.81 -26.82 -0.18 -1.42 16 17 C -0.12 -1.92 6.86 -25.01 -0.17 -2.10 16 18 C -0.01 -0.29 4.93 -104.62 -0.52 -0.80 16 19 C -0.10 -2.04 9.27 -39.58 -0.37 -2.41 16 20 C -0.13 -2.20 10.05 -39.58 -0.40 -2.59 16 21 C -0.15 -2.55 10.05 -39.58 -0.40 -2.94 16 22 C -0.12 -2.18 10.05 -39.58 -0.40 -2.57 16 23 C -0.13 -2.73 9.67 -39.58 -0.38 -3.11 16 24 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 25 H 0.33 6.59 7.30 -39.29 -0.29 6.31 16 26 H 0.11 1.97 8.06 -52.49 -0.42 1.54 16 27 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.09 7.60 -51.93 -0.39 0.70 16 32 H 0.11 2.17 7.45 -52.48 -0.39 1.78 16 33 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 35 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.11 2.14 7.99 -52.49 -0.42 1.72 16 LS Contribution 296.50 15.07 4.47 4.47 Total: -1.00 -28.71 296.50 -9.19 -37.90 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -5.04 Total: 10.66 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: -4.30 Total: -29.71 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.19 Total: -39.48 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.51 Total: 16.17 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.71 -9.19 -37.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698248281.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.582 kcal (2) G-P(sol) polarization free energy of solvation -28.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds