Wall clock time and date at job start Mon Mar 30 2020 05:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00002 * 2 1 4 4 H 1.48497 * 109.46908 * 265.55895 * 3 2 1 5 5 H 1.48502 * 109.46802 * 25.55913 * 3 2 1 6 6 H 1.48504 * 109.46902 * 145.55903 * 3 2 1 7 7 C 1.37885 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99706 * 352.80279 * 7 2 1 9 9 C 1.50699 * 119.99954 * 172.79552 * 7 2 1 10 10 H 1.09003 * 109.47009 * 5.03225 * 9 7 2 11 11 N 1.46898 * 109.46926 * 125.03373 * 9 7 2 12 12 C 1.46900 * 110.99970 * 275.00104 * 11 9 7 13 13 H 1.08998 * 110.34839 * 35.83292 * 12 11 9 14 14 C 1.51110 * 110.38721 * 273.54666 * 12 11 9 15 15 C 1.30523 * 111.10374 * 257.75972 * 14 12 11 16 16 C 1.51103 * 111.10632 * 359.60731 * 15 14 12 17 17 C 1.54631 * 110.48179 * 158.18931 * 12 11 9 18 18 C 1.50700 * 109.47171 * 245.03720 * 9 7 2 19 19 C 1.38233 * 119.99626 * 285.65490 * 18 9 7 20 20 C 1.38239 * 119.99942 * 179.79081 * 19 18 9 21 21 C 1.38233 * 119.99672 * 0.44137 * 20 19 18 22 22 C 1.38238 * 120.00350 * 359.80738 * 21 20 19 23 23 C 1.38232 * 119.99852 * 359.97438 * 22 21 20 24 24 H 0.96997 * 119.99835 * 359.97438 * 1 2 3 25 25 H 1.00895 * 111.00248 * 38.95698 * 11 9 7 26 26 H 1.07995 * 124.44694 * 77.48662 * 14 12 11 27 27 H 1.07999 * 124.44568 * 179.73955 * 15 14 12 28 28 H 1.08995 * 110.53033 * 225.02320 * 16 15 14 29 29 H 1.09007 * 110.28714 * 102.72855 * 16 15 14 30 30 H 1.09003 * 111.03589 * 212.25471 * 17 12 11 31 31 H 1.08992 * 111.03880 * 336.15741 * 17 12 11 32 32 H 1.08003 * 120.00197 * 359.97438 * 19 18 9 33 33 H 1.08002 * 120.00179 * 180.26879 * 20 19 18 34 34 H 1.08008 * 119.99803 * 179.84055 * 21 20 19 35 35 H 1.07999 * 119.99912 * 180.02562 * 22 21 20 36 36 H 1.07999 * 120.00496 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5905 1.9922 -1.3959 5 1 1.4027 2.6779 0.6041 6 1 3.4966 1.4690 0.7919 7 6 2.0046 -1.1941 0.0005 8 1 1.4709 -2.1257 0.1181 9 6 3.5027 -1.1993 -0.1631 10 1 3.8701 -0.1732 -0.1778 11 7 4.1153 -1.9229 0.9590 12 6 4.3077 -1.0366 2.1146 13 1 3.4853 -0.3250 2.1876 14 6 5.6266 -0.3072 2.0047 15 6 6.5268 -0.8442 2.7824 16 6 5.9559 -2.0154 3.5478 17 6 4.4227 -1.8626 3.4167 18 6 3.8642 -1.8808 -1.4577 19 6 3.7732 -3.2561 -1.5636 20 6 4.1007 -3.8809 -2.7525 21 6 4.5279 -3.1312 -3.8324 22 6 4.6238 -1.7564 -3.7249 23 6 4.2920 -1.1312 -2.5375 24 1 -0.4850 0.8400 0.0004 25 1 3.5665 -2.7312 1.2107 26 1 5.8025 0.5437 1.3634 27 1 7.5454 -0.4959 2.8692 28 1 6.2540 -1.9694 4.5951 29 1 6.2834 -2.9544 3.1014 30 1 4.0102 -1.3157 4.2646 31 1 3.9400 -2.8337 3.3079 32 1 3.4434 -3.8422 -0.7185 33 1 4.0254 -4.9550 -2.8366 34 1 4.7862 -3.6196 -4.7605 35 1 4.9571 -1.1707 -4.5688 36 1 4.3673 -0.0571 -2.4533 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698248281.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:42 Heat of formation + Delta-G solvation = 26.029854 kcal Electronic energy + Delta-G solvation = -17333.873535 eV Core-core repulsion = 14782.059795 eV Total energy + Delta-G solvation = -2551.813740 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.32358 -39.41981 -36.31589 -34.10772 -31.82562 -31.52121 -29.83240 -28.74083 -26.85263 -24.32211 -23.26571 -21.50998 -21.42457 -19.39121 -19.12415 -17.72226 -16.92408 -16.74794 -16.42117 -15.86984 -15.40820 -14.97372 -14.82806 -14.19875 -14.03287 -13.79464 -13.68256 -13.10696 -12.94011 -12.86100 -12.55697 -12.25048 -12.23698 -11.96618 -11.87033 -11.80571 -11.50526 -11.27025 -10.85366 -9.92042 -9.63865 -9.38480 -8.98195 -8.40972 -6.44360 0.68066 0.74955 1.23048 1.25562 1.33891 1.45038 2.22206 2.90872 3.18848 3.63663 3.81577 3.92672 4.15605 4.28418 4.35146 4.38637 4.45609 4.55588 4.61265 4.72471 4.85066 4.91610 4.94180 5.02183 5.08359 5.20871 5.28944 5.33319 5.38799 5.43941 5.66776 5.74840 5.79590 5.97235 6.06142 6.11249 6.32326 6.43545 6.62356 6.79313 7.23090 8.75158 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.014937 B = 0.010966 C = 0.007720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.051276 B = 2552.732582 C = 3626.097492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.027 3.973 3 Si 0.922 3.078 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.244 1.244 7 C -0.527 4.527 8 H 0.038 0.962 9 C 0.215 3.785 10 H 0.041 0.959 11 N -0.662 5.662 12 C 0.099 3.901 13 H 0.016 0.984 14 C -0.175 4.175 15 C -0.146 4.146 16 C -0.085 4.085 17 C -0.122 4.122 18 C -0.047 4.047 19 C -0.120 4.120 20 C -0.124 4.124 21 C -0.143 4.143 22 C -0.122 4.122 23 C -0.157 4.157 24 H 0.266 0.734 25 H 0.332 0.668 26 H 0.102 0.898 27 H 0.144 0.856 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.141 0.859 34 H 0.148 0.852 35 H 0.140 0.860 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.056 -3.636 0.895 13.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.173 4.173 3 Si 0.747 3.253 4 H -0.191 1.191 5 H -0.213 1.213 6 H -0.168 1.168 7 C -0.566 4.566 8 H 0.056 0.944 9 C 0.106 3.894 10 H 0.059 0.941 11 N -0.291 5.291 12 C -0.011 4.011 13 H 0.034 0.966 14 C -0.193 4.193 15 C -0.164 4.164 16 C -0.122 4.122 17 C -0.160 4.160 18 C -0.048 4.048 19 C -0.139 4.139 20 C -0.142 4.142 21 C -0.161 4.161 22 C -0.140 4.140 23 C -0.176 4.176 24 H 0.076 0.924 25 H 0.150 0.850 26 H 0.120 0.880 27 H 0.161 0.839 28 H 0.107 0.893 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.128 0.872 33 H 0.159 0.841 34 H 0.166 0.834 35 H 0.158 0.842 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 13.528 -3.452 0.681 13.978 hybrid contribution -1.510 1.257 0.176 1.972 sum 12.018 -2.195 0.856 12.247 Atomic orbital electron populations 1.70047 1.08009 1.28059 1.51456 1.25842 0.95313 1.02409 0.93738 0.86131 0.79789 0.79737 0.79660 1.19109 1.21275 1.16781 1.21709 0.92196 0.93329 1.49380 0.94367 1.18464 0.90623 0.93186 0.87139 0.94082 1.61013 1.52884 1.09017 1.06232 1.21263 0.94544 0.94008 0.91249 0.96623 1.23156 0.96286 0.99576 1.00318 1.23453 0.98909 0.96502 0.97577 1.21277 0.93172 0.97300 1.00443 1.22585 0.97808 0.99917 0.95681 1.20273 0.93838 0.94628 0.96049 1.20926 1.00724 0.94004 0.98232 1.21403 0.99215 1.00734 0.92874 1.21326 1.01559 0.93756 0.99459 1.21300 1.00062 0.95649 0.96968 1.21108 1.02582 0.99278 0.94611 0.92449 0.84976 0.88013 0.83868 0.89264 0.90226 0.90611 0.90552 0.87205 0.84125 0.83447 0.84198 0.87885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.95 13.96 21.45 0.30 -57.65 16 2 C 0.03 1.54 5.47 84.66 0.46 2.00 16 3 Si 0.92 44.31 26.54 68.60 1.82 46.13 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 6 H -0.24 -11.05 6.25 99.48 0.62 -10.43 16 7 C -0.53 -29.42 8.51 25.60 0.22 -29.20 16 8 H 0.04 2.37 8.06 -2.91 -0.02 2.34 16 9 C 0.21 10.09 2.01 43.42 0.09 10.18 16 10 H 0.04 2.00 4.05 -2.39 -0.01 1.99 16 11 N -0.66 -27.26 5.66 -477.50 -2.70 -29.96 16 12 C 0.10 3.81 3.00 44.85 0.13 3.95 16 13 H 0.02 0.72 6.77 -2.39 -0.02 0.70 16 14 C -0.17 -6.04 10.18 26.27 0.27 -5.77 16 15 C -0.15 -3.98 10.78 26.27 0.28 -3.70 16 16 C -0.09 -2.10 6.81 30.53 0.21 -1.90 16 17 C -0.12 -3.67 6.86 31.71 0.22 -3.45 16 18 C -0.05 -2.05 4.93 -19.87 -0.10 -2.15 16 19 C -0.12 -4.75 9.27 22.27 0.21 -4.55 16 20 C -0.12 -4.04 10.05 22.27 0.22 -3.81 16 21 C -0.14 -4.28 10.05 22.27 0.22 -4.05 16 22 C -0.12 -4.00 10.05 22.27 0.22 -3.78 16 23 C -0.16 -6.34 9.67 22.27 0.22 -6.12 16 24 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 25 H 0.33 13.61 7.30 -89.70 -0.65 12.96 16 26 H 0.10 3.63 8.06 -2.91 -0.02 3.60 16 27 H 0.14 3.10 8.06 -2.91 -0.02 3.07 16 28 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.08 1.92 8.14 -2.38 -0.02 1.91 16 30 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.08 2.22 7.60 -2.39 -0.02 2.21 16 32 H 0.11 4.28 7.45 -2.91 -0.02 4.26 16 33 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 34 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 35 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 36 H 0.10 4.11 7.99 -2.91 -0.02 4.09 16 Total: -1.00 -65.32 296.50 2.61 -62.70 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: 0.32 Total: 31.14 kcal Atomic # 6 Polarization: -55.24 SS G_CDS: 2.87 Total: -52.36 kcal Atomic # 7 Polarization: -85.21 SS G_CDS: -2.41 Total: -87.61 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.82 Total: 46.13 kcal Total: -65.32 2.61 -62.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698248281.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.734 kcal (2) G-P(sol) polarization free energy of solvation -65.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds