Wall clock time and date at job start Mon Mar 30 2020 05:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30908 * 1 3 3 Si 1.86803 * 119.99921 * 2 1 4 4 H 1.48502 * 109.46799 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47027 * 299.99535 * 3 2 1 6 6 H 1.48496 * 109.47038 * 60.00070 * 3 2 1 7 7 C 1.39860 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00115 * 194.96188 * 7 2 1 9 9 C 1.41137 * 120.00485 * 14.95465 * 7 2 1 10 10 C 1.40883 * 120.16214 * 205.52844 * 9 7 2 11 11 C 1.36335 * 119.84162 * 180.02562 * 10 9 7 12 12 C 1.39566 * 120.15778 * 0.02562 * 11 10 9 13 13 N 1.38859 * 119.84418 * 179.97438 * 12 11 10 14 14 C 1.47476 * 110.99827 * 313.25699 * 13 12 11 15 15 C 1.53510 * 87.93146 * 221.29302 * 14 13 12 16 16 C 1.53000 * 114.17087 * 139.66881 * 15 14 13 17 17 C 1.53005 * 117.50013 * 154.90608 * 16 15 14 18 18 C 1.53006 * 117.49731 * 86.25004 * 16 15 14 19 19 C 1.47479 * 111.00226 * 217.28287 * 13 12 11 20 20 C 1.39567 * 120.31815 * 359.97438 * 12 11 10 21 21 C 1.36339 * 120.15985 * 359.97438 * 20 12 11 22 22 H 0.96992 * 120.00153 * 0.02562 * 1 2 3 23 23 H 1.08002 * 120.07640 * 0.04406 * 10 9 7 24 24 H 1.07994 * 119.92383 * 180.30635 * 11 10 9 25 25 H 1.09003 * 113.47989 * 336.06171 * 14 13 12 26 26 H 1.08995 * 113.48060 * 106.52928 * 14 13 12 27 27 H 1.08997 * 114.17592 * 272.37445 * 15 14 13 28 28 H 1.08999 * 115.55011 * 300.57851 * 16 15 14 29 29 H 1.09003 * 117.49644 * 359.97438 * 17 16 15 30 30 H 1.08996 * 117.49732 * 145.02080 * 17 16 15 31 31 H 1.09007 * 117.49678 * 214.98350 * 18 16 15 32 32 H 1.08996 * 117.49732 * 359.97438 * 18 16 15 33 33 H 1.08996 * 113.47597 * 253.46637 * 19 13 12 34 34 H 1.08997 * 113.47580 * 23.87718 * 19 13 12 35 35 H 1.08000 * 119.92258 * 179.97438 * 20 12 11 36 36 H 1.08003 * 120.08299 * 179.97438 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 3.7031 1.3464 0.0006 5 1 1.8844 2.3964 -1.2126 6 1 1.8843 2.3964 1.2125 7 6 2.0084 -1.2112 0.0005 8 1 3.0609 -1.2270 0.2420 9 6 1.3386 -2.4130 -0.3143 10 6 1.8212 -3.6420 0.1771 11 6 1.1695 -4.7990 -0.1316 12 6 0.0271 -4.7680 -0.9327 13 7 -0.6314 -5.9504 -1.2435 14 6 0.3225 -6.9884 -1.6764 15 6 -0.6852 -7.3814 -2.7657 16 6 -0.0494 -7.7119 -4.1176 17 6 -0.8234 -8.6422 -5.0538 18 6 0.4328 -9.1469 -4.3394 19 6 -1.1430 -5.9228 -2.6264 20 6 -0.4568 -3.5542 -1.4231 21 6 0.1842 -2.3892 -1.1216 22 1 -0.4850 0.8400 -0.0004 23 1 2.7052 -3.6675 0.7970 24 1 1.5354 -5.7413 0.2484 25 1 1.2542 -6.5841 -2.0722 26 1 0.4833 -7.7681 -0.9320 27 1 -1.4257 -8.1142 -2.4454 28 1 0.5316 -6.9097 -4.5725 29 1 -1.7854 -9.0191 -4.7064 30 1 -0.7513 -8.4522 -6.1246 31 1 1.3309 -9.2888 -4.9407 32 1 0.2975 -9.8553 -3.5222 33 1 -2.2243 -5.7994 -2.6869 34 1 -0.6032 -5.2333 -3.2754 35 1 -1.3412 -3.5376 -2.0428 36 1 -0.1911 -1.4507 -1.5021 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701857852.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:56 Heat of formation + Delta-G solvation = 78.631894 kcal Electronic energy + Delta-G solvation = -16708.169366 eV Core-core repulsion = 14158.636622 eV Total energy + Delta-G solvation = -2549.532744 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.36525 -37.44062 -36.21960 -33.51709 -30.39458 -29.62797 -27.54457 -25.62034 -24.36309 -22.35901 -21.92888 -20.69176 -19.81733 -19.33770 -17.32008 -16.34583 -15.50767 -15.25330 -14.92736 -14.17653 -13.89723 -13.67223 -12.81562 -12.56441 -12.23383 -12.03514 -11.96910 -11.79127 -11.58576 -11.30922 -11.07512 -11.00536 -10.82120 -10.76443 -10.39304 -10.06330 -9.77862 -9.63896 -9.34330 -9.28700 -8.73224 -7.56758 -6.93907 -6.72721 -4.28642 2.70228 3.05511 3.07796 3.12443 3.14909 3.71677 3.93541 4.47480 4.61178 4.70490 4.81002 4.98713 5.23683 5.36154 5.51497 5.57574 5.69120 5.79541 5.81699 5.89690 6.01429 6.06125 6.06751 6.15752 6.18284 6.24091 6.44544 6.54748 6.89438 7.08353 7.18983 7.38816 7.45139 7.61306 8.02694 8.06719 8.19107 8.32477 8.63713 8.89469 8.99031 10.20531 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.047539 B = 0.004609 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.851219 B = 6073.819439 C = 6166.005941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.460 4.460 8 H 0.077 0.923 9 C 0.101 3.899 10 C -0.212 4.212 11 C -0.101 4.101 12 C -0.068 4.068 13 N -0.420 5.420 14 C 0.014 3.986 15 C -0.090 4.090 16 C -0.138 4.138 17 C -0.181 4.181 18 C -0.179 4.179 19 C 0.013 3.987 20 C -0.115 4.115 21 C -0.150 4.150 22 H 0.279 0.721 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.544 -10.038 -7.214 12.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.490 4.490 8 H 0.095 0.905 9 C 0.098 3.902 10 C -0.232 4.232 11 C -0.121 4.121 12 C -0.164 4.164 13 N -0.136 5.136 14 C -0.114 4.114 15 C -0.109 4.109 16 C -0.156 4.156 17 C -0.218 4.218 18 C -0.216 4.216 19 C -0.115 4.115 20 C -0.135 4.135 21 C -0.169 4.169 22 H 0.090 0.910 23 H 0.111 0.889 24 H 0.107 0.893 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.113 0.887 28 H 0.122 0.878 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.198 -9.976 -6.610 12.026 hybrid contribution 0.806 1.085 -0.410 1.412 sum -0.392 -8.891 -7.019 11.334 Atomic orbital electron populations 1.69855 1.07484 1.28970 1.36012 1.25905 0.94767 1.01281 0.92386 0.86257 0.80898 0.81001 0.78533 1.18455 1.19755 1.20000 1.19556 0.97139 0.91000 1.41293 0.90496 1.17641 0.91618 0.92065 0.88841 1.20631 1.03070 0.92979 1.06528 1.20050 0.95265 0.96996 0.99795 1.18758 0.98683 0.89955 1.08974 1.66213 1.21668 1.06009 1.19724 1.23769 0.95536 0.96084 0.96003 1.22334 0.98350 0.97464 0.92735 1.22256 1.03107 0.93583 0.96691 1.22947 0.96164 1.04605 0.98040 1.22902 0.98093 0.97383 1.03253 1.23786 1.01207 0.95166 0.91323 1.20343 0.99255 0.92394 1.01487 1.21031 0.98557 0.96653 1.00708 0.90991 0.88863 0.89279 0.91122 0.90799 0.88658 0.87799 0.88890 0.89085 0.89050 0.88853 0.90657 0.90965 0.89186 0.86087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.84 10.84 55.54 0.60 -20.23 16 2 C 0.07 1.86 5.19 -17.34 -0.09 1.77 16 3 Si 0.91 18.75 29.59 -169.99 -5.03 13.72 16 4 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.46 -12.30 9.04 -37.88 -0.34 -12.64 16 8 H 0.08 1.98 7.89 -52.49 -0.41 1.56 16 9 C 0.10 2.72 5.57 -106.79 -0.60 2.13 16 10 C -0.21 -5.29 9.74 -39.27 -0.38 -5.67 16 11 C -0.10 -2.34 8.92 -39.77 -0.35 -2.69 16 12 C -0.07 -1.54 5.34 -83.69 -0.45 -1.98 16 13 N -0.42 -8.13 6.50 -180.43 -1.17 -9.30 16 14 C 0.01 0.22 6.23 -7.55 -0.05 0.18 16 15 C -0.09 -1.22 4.14 -90.09 -0.37 -1.60 16 16 C -0.14 -1.62 5.47 -90.61 -0.50 -2.12 16 17 C -0.18 -1.79 10.25 -26.69 -0.27 -2.06 16 18 C -0.18 -1.80 10.25 -26.69 -0.27 -2.07 16 19 C 0.01 0.22 6.02 -7.55 -0.05 0.17 16 20 C -0.11 -2.74 8.69 -39.77 -0.35 -3.09 16 21 C -0.15 -3.93 8.63 -39.26 -0.34 -4.27 16 22 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 23 H 0.09 2.19 8.06 -52.49 -0.42 1.76 16 24 H 0.09 1.86 7.55 -52.49 -0.40 1.47 16 25 H 0.07 1.20 7.59 -51.93 -0.39 0.80 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 0.84 8.14 -51.92 -0.42 0.41 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.07 1.24 7.25 -51.93 -0.38 0.86 16 35 H 0.09 1.98 7.14 -52.49 -0.37 1.61 16 36 H 0.12 3.28 6.12 -52.48 -0.32 2.96 16 LS Contribution 296.74 15.07 4.47 4.47 Total: -1.00 -27.63 296.74 -10.75 -38.38 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.21 Total: 6.92 kcal Atomic # 6 Polarization: -29.55 SS G_CDS: -4.40 Total: -33.96 kcal Atomic # 7 Polarization: -28.96 SS G_CDS: -0.57 Total: -29.53 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.63 -10.75 -38.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701857852.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.013 kcal (2) G-P(sol) polarization free energy of solvation -27.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds