Wall clock time and date at job start Mon Mar 30 2020 05:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30908 * 1 3 3 Si 1.86803 * 119.99921 * 2 1 4 4 H 1.48502 * 109.46799 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47027 * 299.99535 * 3 2 1 6 6 H 1.48496 * 109.47038 * 60.00070 * 3 2 1 7 7 C 1.39860 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00115 * 194.96188 * 7 2 1 9 9 C 1.41137 * 120.00485 * 14.95465 * 7 2 1 10 10 C 1.40883 * 120.16214 * 205.52844 * 9 7 2 11 11 C 1.36335 * 119.84162 * 180.02562 * 10 9 7 12 12 C 1.39566 * 120.15778 * 0.02562 * 11 10 9 13 13 N 1.38859 * 119.84418 * 179.97438 * 12 11 10 14 14 C 1.47476 * 110.99827 * 313.25699 * 13 12 11 15 15 C 1.53510 * 87.93146 * 221.29302 * 14 13 12 16 16 C 1.53000 * 114.17087 * 139.66881 * 15 14 13 17 17 C 1.53005 * 117.50013 * 154.90608 * 16 15 14 18 18 C 1.53006 * 117.49731 * 86.25004 * 16 15 14 19 19 C 1.47479 * 111.00226 * 217.28287 * 13 12 11 20 20 C 1.39567 * 120.31815 * 359.97438 * 12 11 10 21 21 C 1.36339 * 120.15985 * 359.97438 * 20 12 11 22 22 H 0.96992 * 120.00153 * 0.02562 * 1 2 3 23 23 H 1.08002 * 120.07640 * 0.04406 * 10 9 7 24 24 H 1.07994 * 119.92383 * 180.30635 * 11 10 9 25 25 H 1.09003 * 113.47989 * 336.06171 * 14 13 12 26 26 H 1.08995 * 113.48060 * 106.52928 * 14 13 12 27 27 H 1.08997 * 114.17592 * 272.37445 * 15 14 13 28 28 H 1.08999 * 115.55011 * 300.57851 * 16 15 14 29 29 H 1.09003 * 117.49644 * 359.97438 * 17 16 15 30 30 H 1.08996 * 117.49732 * 145.02080 * 17 16 15 31 31 H 1.09007 * 117.49678 * 214.98350 * 18 16 15 32 32 H 1.08996 * 117.49732 * 359.97438 * 18 16 15 33 33 H 1.08996 * 113.47597 * 253.46637 * 19 13 12 34 34 H 1.08997 * 113.47580 * 23.87718 * 19 13 12 35 35 H 1.08000 * 119.92258 * 179.97438 * 20 12 11 36 36 H 1.08003 * 120.08299 * 179.97438 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 3.7031 1.3464 0.0006 5 1 1.8844 2.3964 -1.2126 6 1 1.8843 2.3964 1.2125 7 6 2.0084 -1.2112 0.0005 8 1 3.0609 -1.2270 0.2420 9 6 1.3386 -2.4130 -0.3143 10 6 1.8212 -3.6420 0.1771 11 6 1.1695 -4.7990 -0.1316 12 6 0.0271 -4.7680 -0.9327 13 7 -0.6314 -5.9504 -1.2435 14 6 0.3225 -6.9884 -1.6764 15 6 -0.6852 -7.3814 -2.7657 16 6 -0.0494 -7.7119 -4.1176 17 6 -0.8234 -8.6422 -5.0538 18 6 0.4328 -9.1469 -4.3394 19 6 -1.1430 -5.9228 -2.6264 20 6 -0.4568 -3.5542 -1.4231 21 6 0.1842 -2.3892 -1.1216 22 1 -0.4850 0.8400 -0.0004 23 1 2.7052 -3.6675 0.7970 24 1 1.5354 -5.7413 0.2484 25 1 1.2542 -6.5841 -2.0722 26 1 0.4833 -7.7681 -0.9320 27 1 -1.4257 -8.1142 -2.4454 28 1 0.5316 -6.9097 -4.5725 29 1 -1.7854 -9.0191 -4.7064 30 1 -0.7513 -8.4522 -6.1246 31 1 1.3309 -9.2888 -4.9407 32 1 0.2975 -9.8553 -3.5222 33 1 -2.2243 -5.7994 -2.6869 34 1 -0.6032 -5.2333 -3.2754 35 1 -1.3412 -3.5376 -2.0428 36 1 -0.1911 -1.4507 -1.5021 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701857852.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:55 Heat of formation + Delta-G solvation = 64.119653 kcal Electronic energy + Delta-G solvation = -16708.798664 eV Core-core repulsion = 14158.636622 eV Total energy + Delta-G solvation = -2550.162042 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.80025 -39.02345 -37.41840 -35.36339 -32.12222 -31.51678 -29.19975 -27.00814 -26.07242 -23.32120 -23.13883 -22.54243 -21.31785 -20.62247 -19.24690 -17.84022 -17.01623 -16.69578 -16.04051 -15.81996 -15.66970 -14.90584 -14.43396 -14.19629 -13.98933 -13.66762 -13.50931 -13.35955 -12.87208 -12.74296 -12.46140 -12.34563 -12.21057 -12.02108 -11.94124 -11.64204 -11.23066 -11.11822 -11.04143 -10.59274 -10.41261 -9.50847 -8.79456 -8.60278 -6.26905 0.87516 1.09643 1.37898 1.47662 1.53316 2.20985 2.67544 2.82889 3.27220 3.61739 3.69625 3.78329 4.09792 4.24020 4.26977 4.35618 4.36622 4.48318 4.57186 4.59940 4.71017 4.72034 4.85329 4.88528 4.99319 5.09311 5.16853 5.21412 5.32230 5.33548 5.44821 5.46524 5.66425 5.69459 6.06824 6.20596 6.27576 6.48038 6.70344 6.93118 7.05208 8.34895 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.047539 B = 0.004609 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.851219 B = 6073.819439 C = 6166.005941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.032 3.968 3 Si 0.985 3.015 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.266 1.266 7 C -0.498 4.498 8 H 0.075 0.925 9 C 0.067 3.933 10 C -0.223 4.223 11 C -0.108 4.108 12 C -0.051 4.051 13 N -0.439 5.439 14 C 0.013 3.987 15 C -0.063 4.063 16 C -0.159 4.159 17 C -0.169 4.169 18 C -0.170 4.170 19 C 0.009 3.991 20 C -0.124 4.124 21 C -0.169 4.169 22 H 0.287 0.713 23 H 0.101 0.899 24 H 0.114 0.886 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.111 0.889 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.630 -11.555 -7.986 14.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.182 4.182 3 Si 0.805 3.195 4 H -0.181 1.181 5 H -0.189 1.189 6 H -0.191 1.191 7 C -0.528 4.528 8 H 0.093 0.907 9 C 0.065 3.935 10 C -0.243 4.243 11 C -0.128 4.128 12 C -0.147 4.147 13 N -0.155 5.155 14 C -0.115 4.115 15 C -0.081 4.081 16 C -0.177 4.177 17 C -0.206 4.206 18 C -0.207 4.207 19 C -0.119 4.119 20 C -0.144 4.144 21 C -0.189 4.189 22 H 0.097 0.903 23 H 0.119 0.881 24 H 0.132 0.868 25 H 0.079 0.921 26 H 0.106 0.894 27 H 0.129 0.871 28 H 0.112 0.888 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.122 0.878 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.291 -11.524 -7.389 13.750 hybrid contribution 0.753 1.362 -0.200 1.569 sum -0.539 -10.162 -7.589 12.695 Atomic orbital electron populations 1.69913 1.08977 1.30327 1.36662 1.26770 0.95537 1.04555 0.91298 0.85122 0.79334 0.76089 0.78917 1.18128 1.18851 1.19117 1.19794 0.97336 0.92199 1.43425 0.90664 1.17972 0.92504 0.93146 0.89918 1.20841 1.03611 0.93157 1.06706 1.20311 0.95311 0.97406 0.99735 1.19007 0.97764 0.90972 1.06974 1.66118 1.22518 1.05005 1.21871 1.23825 0.95224 0.95120 0.97298 1.22185 0.97234 0.95743 0.92965 1.22127 1.04732 0.94562 0.96305 1.23045 0.96494 1.02745 0.98296 1.22997 0.98660 0.95641 1.03431 1.23856 1.01562 0.97249 0.89235 1.20521 0.99704 0.92357 1.01804 1.20986 0.99332 0.96878 1.01729 0.90257 0.88121 0.86841 0.92093 0.89365 0.87103 0.88849 0.88005 0.88077 0.88148 0.88112 0.89776 0.92056 0.87756 0.87733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.76 10.84 21.81 0.24 -44.53 16 2 C 0.03 1.65 5.19 85.22 0.44 2.10 16 3 Si 0.98 38.95 29.59 68.60 2.03 40.98 16 4 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 5 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 6 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 7 C -0.50 -27.56 9.04 23.37 0.21 -27.35 16 8 H 0.08 4.01 7.89 -2.91 -0.02 3.99 16 9 C 0.07 3.75 5.57 -21.27 -0.12 3.63 16 10 C -0.22 -11.36 9.74 22.47 0.22 -11.14 16 11 C -0.11 -4.95 8.92 22.15 0.20 -4.76 16 12 C -0.05 -2.29 5.34 38.67 0.21 -2.09 16 13 N -0.44 -16.34 6.50 -724.75 -4.71 -21.05 16 14 C 0.01 0.38 6.23 83.58 0.52 0.90 16 15 C -0.06 -1.54 4.14 -10.45 -0.04 -1.58 16 16 C -0.16 -3.34 5.47 -10.79 -0.06 -3.40 16 17 C -0.17 -2.78 10.25 30.62 0.31 -2.46 16 18 C -0.17 -2.86 10.25 30.62 0.31 -2.55 16 19 C 0.01 0.27 6.02 83.58 0.50 0.77 16 20 C -0.12 -6.02 8.69 22.15 0.19 -5.82 16 21 C -0.17 -9.24 8.63 22.48 0.19 -9.04 16 22 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 23 H 0.10 4.82 8.06 -2.91 -0.02 4.79 16 24 H 0.11 4.58 7.55 -2.91 -0.02 4.56 16 25 H 0.06 1.98 7.59 -2.39 -0.02 1.96 16 26 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.06 2.06 7.25 -2.39 -0.02 2.04 16 35 H 0.10 4.64 7.14 -2.91 -0.02 4.62 16 36 H 0.10 5.95 6.12 -2.91 -0.02 5.94 16 Total: -1.00 -60.54 296.74 1.71 -58.84 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: 1.05 Total: 28.54 kcal Atomic # 6 Polarization: -65.88 SS G_CDS: 3.09 Total: -62.78 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: -4.47 Total: -65.58 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.98 kcal Total: -60.54 1.71 -58.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701857852.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.956 kcal (2) G-P(sol) polarization free energy of solvation -60.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds