Wall clock time and date at job start Mon Mar 30 2020 05:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86802 * 120.00295 * 2 1 4 4 H 1.48504 * 109.46872 * 239.99538 * 3 2 1 5 5 H 1.48503 * 109.46856 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47552 * 119.99393 * 3 2 1 7 7 C 1.39936 * 119.99801 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00083 * 196.11362 * 7 2 1 9 9 C 1.41405 * 120.00268 * 16.11483 * 7 2 1 10 10 C 1.40782 * 120.20642 * 206.14523 * 9 7 2 11 11 C 1.37651 * 119.89055 * 179.97438 * 10 9 7 12 12 C 1.38528 * 120.32270 * 359.72224 * 11 10 9 13 13 C 1.39282 * 120.42630 * 0.55482 * 12 11 10 14 14 N 1.39683 * 119.95533 * 179.72129 * 13 12 11 15 15 C 1.47957 * 111.00482 * 215.75876 * 14 13 12 16 16 C 1.53933 * 86.18391 * 137.57988 * 15 14 13 17 17 C 1.53000 * 113.73358 * 221.92093 * 16 15 14 18 18 C 1.53000 * 117.50148 * 248.61804 * 17 16 15 19 19 C 1.52997 * 60.00279 * 252.51131 * 18 17 16 20 20 C 1.47968 * 110.99702 * 315.11882 * 14 13 12 21 21 C 1.38318 * 120.09725 * 359.44417 * 13 12 11 22 22 H 0.97001 * 119.99890 * 0.02562 * 1 2 3 23 23 H 1.07991 * 120.05761 * 359.97438 * 10 9 7 24 24 H 1.07998 * 119.83640 * 179.97438 * 11 10 9 25 25 H 1.08002 * 119.78638 * 180.27091 * 12 11 10 26 26 H 1.09003 * 113.75748 * 23.26343 * 15 14 13 27 27 H 1.08998 * 113.76076 * 251.90071 * 15 14 13 28 28 H 1.09006 * 113.73384 * 90.63889 * 16 15 14 29 29 H 1.08999 * 115.54916 * 34.32906 * 17 16 15 30 30 H 1.09005 * 117.49732 * 0.02562 * 18 17 16 31 31 H 1.09001 * 117.49867 * 145.02043 * 18 17 16 32 32 H 1.08993 * 117.49904 * 252.51113 * 19 18 17 33 33 H 1.09009 * 117.49576 * 107.48542 * 19 18 17 34 34 H 1.08997 * 113.75868 * 108.09911 * 20 14 13 35 35 H 1.08991 * 113.75922 * 336.72910 * 20 14 13 36 36 H 1.08003 * 120.16542 * 180.29795 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0962 1.6962 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0561 -1.2302 0.2601 9 6 1.3426 -2.4126 -0.3388 10 6 1.8077 -3.6450 0.1581 11 6 1.1547 -4.8098 -0.1760 12 6 0.0378 -4.7753 -0.9947 13 6 -0.4304 -3.5642 -1.4984 14 7 -1.5541 -3.5415 -2.3279 15 6 -1.4204 -2.5035 -3.3737 16 6 -1.9965 -3.5517 -4.3428 17 6 -1.2929 -3.5870 -5.7010 18 6 -2.0848 -3.1081 -6.9194 19 6 -1.7972 -4.5991 -6.7317 20 6 -1.4803 -4.6089 -3.3500 21 6 0.2122 -2.3831 -1.1739 22 1 -0.4850 0.8401 -0.0004 23 1 2.6753 -3.6764 0.8003 24 1 1.5125 -5.7547 0.2054 25 1 -0.4704 -5.6941 -1.2478 26 1 -0.3882 -2.2271 -3.5887 27 1 -2.0700 -1.6414 -3.2224 28 1 -3.0829 -3.5217 -4.4263 29 1 -0.2232 -3.3786 -5.6819 30 1 -3.1068 -2.7676 -6.7533 31 1 -1.5360 -2.5844 -7.7022 32 1 -1.0593 -5.0562 -7.3909 33 1 -2.6303 -5.2397 -6.4421 34 1 -2.1778 -5.4289 -3.1797 35 1 -0.4656 -4.9482 -3.5580 36 1 -0.1528 -1.4428 -1.5601 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701859081.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:36 Heat of formation + Delta-G solvation = 74.409322 kcal Electronic energy + Delta-G solvation = -17003.005072 eV Core-core repulsion = 14453.289224 eV Total energy + Delta-G solvation = -2549.715849 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.16403 -37.33644 -36.05385 -33.55506 -30.43268 -29.53548 -26.52168 -25.97626 -24.76804 -22.31581 -22.06529 -20.69395 -19.63831 -19.16364 -17.31828 -15.97566 -15.46134 -15.15147 -14.69324 -14.35834 -14.14202 -13.57810 -12.87274 -12.62682 -12.45636 -12.00298 -11.80466 -11.53992 -11.42591 -11.19145 -11.02263 -10.99201 -10.83843 -10.56664 -10.38318 -10.12265 -9.70360 -9.61791 -9.44997 -9.20065 -8.81820 -7.36324 -6.88262 -6.63592 -4.35762 2.78974 2.99030 3.07418 3.10065 3.23804 3.77035 3.94750 4.45595 4.64482 4.74897 4.78634 5.00544 5.28548 5.43114 5.53270 5.61777 5.70171 5.81159 5.89234 5.90751 6.05943 6.09355 6.10551 6.22682 6.28552 6.45656 6.52650 6.61182 6.82972 7.09047 7.25319 7.29701 7.48582 7.84336 7.93519 8.07548 8.13260 8.36847 8.69365 8.92312 8.99926 10.22949 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.022450 B = 0.006754 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.921419 B = 4144.765656 C = 4997.442673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.466 4.466 8 H 0.076 0.924 9 C 0.122 3.878 10 C -0.237 4.237 11 C -0.082 4.082 12 C -0.256 4.256 13 C 0.078 3.922 14 N -0.439 5.439 15 C 0.024 3.976 16 C -0.091 4.091 17 C -0.140 4.140 18 C -0.180 4.180 19 C -0.179 4.179 20 C 0.021 3.979 21 C -0.183 4.183 22 H 0.280 0.720 23 H 0.091 0.909 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.933 -3.409 -10.107 11.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.495 4.495 8 H 0.095 0.905 9 C 0.119 3.881 10 C -0.257 4.257 11 C -0.101 4.101 12 C -0.277 4.277 13 C -0.017 4.017 14 N -0.154 5.154 15 C -0.103 4.103 16 C -0.110 4.110 17 C -0.159 4.159 18 C -0.217 4.217 19 C -0.216 4.216 20 C -0.106 4.106 21 C -0.204 4.204 22 H 0.091 0.909 23 H 0.109 0.891 24 H 0.107 0.893 25 H 0.106 0.894 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.112 0.888 29 H 0.123 0.877 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.724 -3.221 -9.640 10.824 hybrid contribution 0.993 0.739 -0.174 1.250 sum -2.731 -2.481 -9.813 10.484 Atomic orbital electron populations 1.69833 1.07453 1.29151 1.35358 1.25892 0.94723 1.01148 0.92358 0.86404 0.80150 0.80433 0.79934 1.18901 1.20348 1.19022 1.19519 0.97476 0.91033 1.41515 0.90541 1.17469 0.90824 0.92055 0.87791 1.20978 1.04223 0.93074 1.07382 1.20388 0.95583 0.96457 0.97679 1.20066 1.02233 0.94871 1.10545 1.19200 0.90161 0.94708 0.97674 1.65784 1.35372 1.03875 1.10419 1.23900 1.01065 0.95677 0.89672 1.22641 0.99655 0.97316 0.91352 1.22316 0.99256 1.04189 0.90106 1.22939 1.01357 0.97065 1.00357 1.22886 1.03578 0.92307 1.02858 1.23860 1.00938 0.95333 0.90496 1.21170 0.99827 0.95505 1.03927 0.90899 0.89104 0.89348 0.89377 0.90463 0.89859 0.88845 0.87735 0.88888 0.89083 0.89074 0.88891 0.90268 0.90777 0.85842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.88 10.96 55.55 0.61 -20.27 16 2 C 0.08 1.94 5.16 -17.34 -0.09 1.85 16 3 Si 0.91 18.84 29.59 -169.99 -5.03 13.81 16 4 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 7 C -0.47 -12.53 9.05 -37.74 -0.34 -12.87 16 8 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 9 C 0.12 3.31 5.56 -106.85 -0.59 2.72 16 10 C -0.24 -5.98 9.79 -38.83 -0.38 -6.36 16 11 C -0.08 -1.91 10.02 -39.69 -0.40 -2.31 16 12 C -0.26 -5.94 8.95 -39.09 -0.35 -6.29 16 13 C 0.08 1.88 5.39 -83.86 -0.45 1.43 16 14 N -0.44 -9.05 6.35 -174.63 -1.11 -10.16 16 15 C 0.02 0.44 6.30 -2.77 -0.02 0.43 16 16 C -0.09 -1.32 3.99 -89.69 -0.36 -1.68 16 17 C -0.14 -1.77 5.43 -90.62 -0.49 -2.26 16 18 C -0.18 -1.92 10.24 -26.73 -0.27 -2.20 16 19 C -0.18 -1.90 10.25 -26.73 -0.27 -2.17 16 20 C 0.02 0.35 6.45 -2.76 -0.02 0.34 16 21 C -0.18 -4.81 7.38 -38.67 -0.29 -5.09 16 22 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 23 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 24 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 25 H 0.09 1.86 7.47 -52.49 -0.39 1.47 16 26 H 0.08 1.49 7.19 -51.93 -0.37 1.11 16 27 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.09 1.28 8.13 -51.93 -0.42 0.86 16 29 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.07 1.28 7.54 -51.93 -0.39 0.89 16 36 H 0.12 3.33 5.23 -52.48 -0.27 3.06 16 LS Contribution 297.07 15.07 4.48 4.48 Total: -1.00 -28.11 297.07 -10.58 -38.70 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -5.21 Total: 7.91 kcal Atomic # 6 Polarization: -30.15 SS G_CDS: -4.32 Total: -34.47 kcal Atomic # 7 Polarization: -29.92 SS G_CDS: -0.50 Total: -30.42 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.11 -10.58 -38.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701859081.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.106 kcal (2) G-P(sol) polarization free energy of solvation -28.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds