Wall clock time and date at job start Mon Mar 30 2020 05:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86802 * 120.00295 * 2 1 4 4 H 1.48504 * 109.46872 * 239.99538 * 3 2 1 5 5 H 1.48503 * 109.46856 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47552 * 119.99393 * 3 2 1 7 7 C 1.39936 * 119.99801 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00083 * 196.11362 * 7 2 1 9 9 C 1.41405 * 120.00268 * 16.11483 * 7 2 1 10 10 C 1.40782 * 120.20642 * 206.14523 * 9 7 2 11 11 C 1.37651 * 119.89055 * 179.97438 * 10 9 7 12 12 C 1.38528 * 120.32270 * 359.72224 * 11 10 9 13 13 C 1.39282 * 120.42630 * 0.55482 * 12 11 10 14 14 N 1.39683 * 119.95533 * 179.72129 * 13 12 11 15 15 C 1.47957 * 111.00482 * 215.75876 * 14 13 12 16 16 C 1.53933 * 86.18391 * 137.57988 * 15 14 13 17 17 C 1.53000 * 113.73358 * 221.92093 * 16 15 14 18 18 C 1.53000 * 117.50148 * 248.61804 * 17 16 15 19 19 C 1.52997 * 60.00279 * 252.51131 * 18 17 16 20 20 C 1.47968 * 110.99702 * 315.11882 * 14 13 12 21 21 C 1.38318 * 120.09725 * 359.44417 * 13 12 11 22 22 H 0.97001 * 119.99890 * 0.02562 * 1 2 3 23 23 H 1.07991 * 120.05761 * 359.97438 * 10 9 7 24 24 H 1.07998 * 119.83640 * 179.97438 * 11 10 9 25 25 H 1.08002 * 119.78638 * 180.27091 * 12 11 10 26 26 H 1.09003 * 113.75748 * 23.26343 * 15 14 13 27 27 H 1.08998 * 113.76076 * 251.90071 * 15 14 13 28 28 H 1.09006 * 113.73384 * 90.63889 * 16 15 14 29 29 H 1.08999 * 115.54916 * 34.32906 * 17 16 15 30 30 H 1.09005 * 117.49732 * 0.02562 * 18 17 16 31 31 H 1.09001 * 117.49867 * 145.02043 * 18 17 16 32 32 H 1.08993 * 117.49904 * 252.51113 * 19 18 17 33 33 H 1.09009 * 117.49576 * 107.48542 * 19 18 17 34 34 H 1.08997 * 113.75868 * 108.09911 * 20 14 13 35 35 H 1.08991 * 113.75922 * 336.72910 * 20 14 13 36 36 H 1.08003 * 120.16542 * 180.29795 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0962 1.6962 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0561 -1.2302 0.2601 9 6 1.3426 -2.4126 -0.3388 10 6 1.8077 -3.6450 0.1581 11 6 1.1547 -4.8098 -0.1760 12 6 0.0378 -4.7753 -0.9947 13 6 -0.4304 -3.5642 -1.4984 14 7 -1.5541 -3.5415 -2.3279 15 6 -1.4204 -2.5035 -3.3737 16 6 -1.9965 -3.5517 -4.3428 17 6 -1.2929 -3.5870 -5.7010 18 6 -2.0848 -3.1081 -6.9194 19 6 -1.7972 -4.5991 -6.7317 20 6 -1.4803 -4.6089 -3.3500 21 6 0.2122 -2.3831 -1.1739 22 1 -0.4850 0.8401 -0.0004 23 1 2.6753 -3.6764 0.8003 24 1 1.5125 -5.7547 0.2054 25 1 -0.4704 -5.6941 -1.2478 26 1 -0.3882 -2.2271 -3.5887 27 1 -2.0700 -1.6414 -3.2224 28 1 -3.0829 -3.5217 -4.4263 29 1 -0.2232 -3.3786 -5.6819 30 1 -3.1068 -2.7676 -6.7533 31 1 -1.5360 -2.5844 -7.7022 32 1 -1.0593 -5.0562 -7.3909 33 1 -2.6303 -5.2397 -6.4421 34 1 -2.1778 -5.4289 -3.1797 35 1 -0.4656 -4.9482 -3.5580 36 1 -0.1528 -1.4428 -1.5601 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701859081.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:36 Heat of formation + Delta-G solvation = 59.481293 kcal Electronic energy + Delta-G solvation = -17003.652400 eV Core-core repulsion = 14453.289224 eV Total energy + Delta-G solvation = -2550.363177 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.65886 -38.89503 -37.33322 -35.45687 -32.13126 -31.42590 -28.16163 -27.56479 -26.53101 -23.43460 -23.12635 -22.55942 -21.13943 -20.58364 -19.15540 -17.65708 -16.79914 -16.64644 -16.30064 -15.93719 -15.76715 -14.92176 -14.46584 -14.28820 -14.14232 -13.55089 -13.44646 -13.07132 -12.83445 -12.65750 -12.45931 -12.30329 -12.25640 -12.11758 -12.01542 -11.62356 -11.34824 -11.07147 -11.00895 -10.67758 -10.52124 -9.32443 -8.74729 -8.49818 -6.38222 0.94391 1.09484 1.36112 1.47768 1.52157 2.19639 2.68560 2.81927 3.10257 3.57535 3.67964 3.76017 4.06282 4.24536 4.29258 4.33584 4.42699 4.53524 4.55707 4.66489 4.70374 4.71586 4.83505 4.85961 4.96276 5.07398 5.14283 5.19648 5.30331 5.32092 5.41393 5.49037 5.61692 5.97966 6.08120 6.11044 6.25295 6.44169 6.76599 6.94487 7.04705 8.33922 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.022450 B = 0.006754 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.921419 B = 4144.765656 C = 4997.442673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.036 3.964 3 Si 0.981 3.019 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.503 4.503 8 H 0.075 0.925 9 C 0.090 3.910 10 C -0.260 4.260 11 C -0.079 4.079 12 C -0.260 4.260 13 C 0.081 3.919 14 N -0.458 5.458 15 C 0.019 3.981 16 C -0.062 4.062 17 C -0.163 4.163 18 C -0.171 4.171 19 C -0.164 4.164 20 C 0.023 3.977 21 C -0.209 4.209 22 H 0.286 0.714 23 H 0.096 0.904 24 H 0.123 0.877 25 H 0.114 0.886 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.591 -4.093 -11.499 12.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.532 4.532 8 H 0.093 0.907 9 C 0.087 3.913 10 C -0.280 4.280 11 C -0.098 4.098 12 C -0.281 4.281 13 C -0.015 4.015 14 N -0.174 5.174 15 C -0.108 4.108 16 C -0.081 4.081 17 C -0.182 4.182 18 C -0.208 4.208 19 C -0.201 4.201 20 C -0.103 4.103 21 C -0.231 4.231 22 H 0.097 0.903 23 H 0.115 0.885 24 H 0.141 0.859 25 H 0.132 0.868 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.128 0.872 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.086 0.914 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.390 -3.928 -11.042 12.515 hybrid contribution 1.122 0.844 0.235 1.424 sum -3.268 -3.084 -10.807 11.704 Atomic orbital electron populations 1.69905 1.09002 1.30417 1.35860 1.26762 0.95475 1.04463 0.91206 0.85271 0.78784 0.75653 0.80105 1.18409 1.19157 1.18313 1.19793 0.97718 0.92296 1.43429 0.90674 1.17883 0.91694 0.93174 0.88534 1.21178 1.05099 0.93418 1.08303 1.20764 0.95040 0.97199 0.96776 1.20425 1.02217 0.95511 1.09978 1.19457 0.90410 0.94235 0.97446 1.65741 1.33655 1.06343 1.11654 1.23883 1.00267 0.96188 0.90497 1.22454 1.00361 0.93835 0.91467 1.22160 0.98696 1.07502 0.89855 1.23042 1.01401 0.97452 0.98887 1.22986 1.03674 0.92310 1.01100 1.23949 1.01294 0.95503 0.89590 1.21105 1.00820 0.95901 1.05239 0.90296 0.88543 0.85883 0.86848 0.92386 0.90354 0.87203 0.89064 0.88083 0.88122 0.87931 0.87876 0.88237 0.91414 0.87512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.96 10.96 21.82 0.24 -44.72 16 2 C 0.04 1.85 5.16 85.25 0.44 2.29 16 3 Si 0.98 39.22 29.59 68.60 2.03 41.25 16 4 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 5 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 6 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 7 C -0.50 -28.13 9.05 23.46 0.21 -27.92 16 8 H 0.08 4.04 7.90 -2.91 -0.02 4.02 16 9 C 0.09 5.09 5.56 -21.31 -0.12 4.98 16 10 C -0.26 -13.40 9.79 22.75 0.22 -13.18 16 11 C -0.08 -3.62 10.02 22.20 0.22 -3.40 16 12 C -0.26 -11.85 8.95 22.59 0.20 -11.65 16 13 C 0.08 3.93 5.39 38.16 0.21 4.14 16 14 N -0.46 -18.81 6.35 -706.41 -4.49 -23.30 16 15 C 0.02 0.71 6.30 86.41 0.54 1.25 16 16 C -0.06 -1.72 3.99 -10.15 -0.04 -1.76 16 17 C -0.16 -3.83 5.43 -10.79 -0.06 -3.89 16 18 C -0.17 -3.17 10.24 30.59 0.31 -2.86 16 19 C -0.16 -2.94 10.25 30.59 0.31 -2.63 16 20 C 0.02 0.74 6.45 86.41 0.56 1.30 16 21 C -0.21 -11.44 7.38 22.86 0.17 -11.27 16 22 H 0.29 14.17 8.30 -92.71 -0.77 13.40 16 23 H 0.10 4.69 8.06 -2.92 -0.02 4.67 16 24 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 25 H 0.11 4.52 7.47 -2.91 -0.02 4.50 16 26 H 0.06 2.35 7.19 -2.39 -0.02 2.33 16 27 H 0.08 2.88 8.14 -2.39 -0.02 2.87 16 28 H 0.11 2.70 8.13 -2.38 -0.02 2.68 16 29 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.07 2.25 7.54 -2.39 -0.02 2.23 16 36 H 0.11 6.09 5.23 -2.91 -0.02 6.08 16 Total: -1.00 -62.27 297.07 2.02 -60.25 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: 1.05 Total: 31.12 kcal Atomic # 6 Polarization: -67.79 SS G_CDS: 3.19 Total: -64.61 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: -4.25 Total: -68.02 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.25 kcal Total: -62.27 2.02 -60.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701859081.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.734 kcal (2) G-P(sol) polarization free energy of solvation -62.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds