Wall clock time and date at job start Mon Mar 30 2020 05:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86803 * 119.99968 * 2 1 4 4 H 1.48503 * 109.46808 * 274.66129 * 3 2 1 5 5 H 1.48501 * 109.47111 * 34.66028 * 3 2 1 6 6 H 1.48495 * 109.47097 * 154.65899 * 3 2 1 7 7 C 1.39927 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00197 * 162.20920 * 7 2 1 9 9 C 1.41416 * 119.99709 * 342.20873 * 7 2 1 10 10 C 1.40778 * 120.20643 * 335.25705 * 9 7 2 11 11 C 1.37658 * 119.89144 * 179.97438 * 10 9 7 12 12 C 1.38514 * 120.32207 * 359.97047 * 11 10 9 13 13 C 1.39302 * 120.42683 * 359.79611 * 12 11 10 14 14 N 1.39692 * 119.95111 * 180.25145 * 13 12 11 15 15 C 1.46500 * 119.99692 * 0.20770 * 14 13 12 16 16 C 1.53006 * 109.46628 * 179.97438 * 15 14 13 17 17 H 1.08997 * 115.55099 * 330.58570 * 16 15 14 18 18 C 1.53006 * 117.49412 * 116.25610 * 16 15 14 19 19 C 1.52988 * 117.49898 * 184.91479 * 16 15 14 20 20 C 1.52990 * 138.59135 * 121.62117 * 19 16 15 21 21 C 1.52992 * 138.58952 * 23.40186 * 19 16 15 22 22 C 1.38304 * 120.09447 * 0.46200 * 13 12 11 23 23 H 0.97000 * 120.00313 * 359.97438 * 1 2 3 24 24 H 1.08001 * 120.05489 * 359.95219 * 10 9 7 25 25 H 1.07999 * 119.83520 * 179.97438 * 11 10 9 26 26 H 1.08005 * 119.78623 * 179.97438 * 12 11 10 27 27 H 0.96991 * 119.99539 * 180.21220 * 14 13 12 28 28 H 1.08992 * 109.47439 * 299.99945 * 15 14 13 29 29 H 1.08998 * 109.47262 * 60.00345 * 15 14 13 30 30 H 1.09004 * 117.49430 * 214.98132 * 18 16 15 31 31 H 1.08992 * 117.49914 * 359.97438 * 18 16 15 32 32 H 1.08998 * 117.49774 * 336.59416 * 20 19 16 33 33 H 1.08998 * 117.49938 * 121.61472 * 20 19 16 34 34 H 1.09000 * 117.50532 * 238.38687 * 21 19 16 35 35 H 1.09007 * 117.49692 * 23.38195 * 21 19 16 36 36 H 1.08004 * 120.16387 * 179.78953 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3912 2.1033 -1.3955 5 1 1.4925 2.6223 0.7962 6 1 3.5856 1.4138 0.5992 7 6 2.0080 -1.2118 0.0005 8 1 3.0492 -1.2343 -0.2852 9 6 1.3516 -2.4070 0.3753 10 6 0.2236 -2.3619 1.2164 11 6 -0.4106 -3.5293 1.5767 12 6 0.0552 -4.7494 1.1151 13 6 1.1673 -4.8092 0.2784 14 7 1.6254 -6.0446 -0.1855 15 6 0.9336 -7.2757 0.2045 16 6 1.6320 -8.4775 -0.4351 17 1 2.1268 -8.2823 -1.3865 18 6 2.2802 -9.4988 0.5019 19 6 0.9901 -9.8527 -0.2420 20 6 0.4361 -10.9913 -1.1007 21 6 -0.3873 -10.4429 0.0663 22 6 1.8210 -3.6475 -0.0903 23 1 -0.4850 0.8400 0.0004 24 1 -0.1434 -1.4129 1.5786 25 1 -1.2757 -3.4936 2.2223 26 1 -0.4488 -5.6600 1.4036 27 1 2.4015 -6.0873 -0.7656 28 1 0.9560 -7.3771 1.2894 29 1 -0.1012 -7.2342 -0.1353 30 1 3.2013 -9.9756 0.1667 31 1 2.2095 -9.3143 1.5737 32 1 0.1050 -10.7454 -2.1096 33 1 0.8855 -11.9770 -0.9803 34 1 -0.4799 -11.0679 0.9546 35 1 -1.2603 -9.8361 -0.1744 36 1 2.6854 -3.6929 -0.7362 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705224231.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:47 Heat of formation + Delta-G solvation = 72.751104 kcal Electronic energy + Delta-G solvation = -16173.570768 eV Core-core repulsion = 13623.783014 eV Total energy + Delta-G solvation = -2549.787754 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.73899 -37.58311 -35.01190 -33.34222 -32.18454 -29.71751 -28.25519 -25.24945 -24.94132 -22.56774 -21.45811 -20.61208 -19.97355 -18.98765 -17.23642 -15.56474 -15.50171 -15.15002 -15.10867 -14.48760 -14.12211 -14.01075 -13.40991 -12.83297 -12.51823 -12.07629 -11.78718 -11.69044 -11.52634 -11.24711 -11.09513 -11.00525 -10.58498 -10.39994 -10.09375 -10.03868 -9.97718 -9.65341 -9.28445 -9.14704 -8.66704 -7.34363 -6.67617 -6.16477 -4.27200 2.88607 3.11966 3.17116 3.25966 3.40415 3.50428 3.56902 3.99647 4.07713 4.45169 4.74863 4.75426 4.78494 5.32604 5.40794 5.44984 5.48825 5.57004 5.67522 5.73448 5.85634 5.89224 5.98285 6.09229 6.26129 6.37061 6.59099 7.07639 7.10257 7.15535 7.38313 7.44405 7.83051 7.95815 8.18343 8.28855 8.55159 8.68759 8.82909 9.03886 9.16209 10.28673 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.054749 B = 0.003967 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.297598 B = 7056.431689 C = 7333.134868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.078 3.922 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.465 4.465 8 H 0.075 0.925 9 C 0.142 3.858 10 C -0.199 4.199 11 C -0.075 4.075 12 C -0.302 4.302 13 C 0.224 3.776 14 N -0.762 5.762 15 C 0.169 3.831 16 C -0.107 4.107 17 H 0.108 0.892 18 C -0.124 4.124 19 C -0.227 4.227 20 C -0.132 4.132 21 C -0.130 4.130 22 C -0.290 4.290 23 H 0.278 0.722 24 H 0.114 0.886 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.388 0.612 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.161 -14.130 -0.308 14.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.495 4.495 8 H 0.093 0.907 9 C 0.139 3.861 10 C -0.219 4.219 11 C -0.094 4.094 12 C -0.325 4.325 13 C 0.126 3.874 14 N -0.396 5.396 15 C 0.043 3.957 16 C -0.125 4.125 17 H 0.125 0.875 18 C -0.161 4.161 19 C -0.228 4.228 20 C -0.169 4.169 21 C -0.167 4.167 22 C -0.314 4.314 23 H 0.089 0.911 24 H 0.132 0.868 25 H 0.103 0.897 26 H 0.102 0.898 27 H 0.221 0.779 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.810 -14.082 -0.226 14.107 hybrid contribution 0.568 0.704 -0.322 0.960 sum 1.377 -13.378 -0.547 13.460 Atomic orbital electron populations 1.69865 1.07549 1.28918 1.35462 1.25886 0.94667 1.01145 0.92284 0.86368 0.80811 0.80968 0.78926 1.19698 1.20115 1.18491 1.19543 0.98022 0.91302 1.40656 0.90661 1.17334 0.90291 0.91273 0.87234 1.21164 1.00611 0.96610 1.03551 1.20437 0.97678 0.92904 0.98404 1.19862 1.03454 0.96516 1.12690 1.17469 0.93036 0.83966 0.92940 1.44402 1.34745 1.02827 1.57582 1.20543 0.95157 0.82240 0.97718 1.22287 1.01184 0.88612 1.00437 0.87453 1.22856 0.93849 1.01294 0.98086 1.21479 0.96382 0.97778 1.07117 1.22646 1.02223 0.96103 0.95910 1.22632 0.92626 1.01979 0.99450 1.20396 1.06675 0.91595 1.12711 0.91085 0.86817 0.89673 0.89764 0.77920 0.92986 0.93001 0.88729 0.88384 0.88691 0.88773 0.88671 0.88458 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.11 10.97 55.55 0.61 -20.50 16 2 C 0.08 2.01 5.14 -17.35 -0.09 1.92 16 3 Si 0.90 19.08 29.59 -169.99 -5.03 14.05 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.47 -12.76 9.05 -37.74 -0.34 -13.10 16 8 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 9 C 0.14 3.93 5.57 -106.85 -0.60 3.33 16 10 C -0.20 -5.40 8.69 -38.83 -0.34 -5.74 16 11 C -0.08 -1.86 10.02 -39.69 -0.40 -2.25 16 12 C -0.30 -7.11 9.32 -39.08 -0.36 -7.48 16 13 C 0.22 5.22 6.64 -83.86 -0.56 4.66 16 14 N -0.76 -14.17 5.73 -58.69 -0.34 -14.50 16 15 C 0.17 2.64 5.19 -4.04 -0.02 2.62 16 16 C -0.11 -1.35 5.84 -90.62 -0.53 -1.88 16 17 H 0.11 1.31 8.04 -51.93 -0.42 0.89 16 18 C -0.12 -1.37 10.18 -26.69 -0.27 -1.64 16 19 C -0.23 -2.56 5.40 -154.49 -0.83 -3.39 16 20 C -0.13 -1.24 10.53 -26.74 -0.28 -1.52 16 21 C -0.13 -1.29 10.53 -26.74 -0.28 -1.58 16 22 C -0.29 -7.40 9.63 -38.68 -0.37 -7.77 16 23 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 24 H 0.11 3.17 6.17 -52.49 -0.32 2.85 16 25 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 26 H 0.08 1.80 6.70 -52.48 -0.35 1.45 16 27 H 0.39 6.54 8.41 -40.82 -0.34 6.20 16 28 H 0.05 0.84 7.67 -51.93 -0.40 0.44 16 29 H 0.05 0.86 7.95 -51.93 -0.41 0.45 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.10 1.07 8.03 -51.93 -0.42 0.66 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 LS Contribution 305.34 15.07 4.60 4.60 Total: -1.00 -28.86 305.34 -10.60 -39.46 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -5.17 Total: 10.70 kcal Atomic # 6 Polarization: -28.54 SS G_CDS: -5.27 Total: -33.81 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.27 Total: -35.00 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.86 -10.60 -39.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705224231.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.212 kcal (2) G-P(sol) polarization free energy of solvation -28.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds