Wall clock time and date at job start Mon Mar 30 2020 05:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86805 * 120.00119 * 2 1 4 4 H 1.48495 * 109.47177 * 270.00086 * 3 2 1 5 5 H 1.48506 * 109.46806 * 30.00075 * 3 2 1 6 6 H 1.48497 * 109.47067 * 149.99589 * 3 2 1 7 7 C 1.39924 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99823 * 197.73652 * 7 2 1 9 9 C 1.41409 * 120.00184 * 17.73738 * 7 2 1 10 10 C 1.40786 * 120.20983 * 204.34435 * 9 7 2 11 11 C 1.37640 * 119.89349 * 180.02562 * 10 9 7 12 12 C 1.38521 * 120.32708 * 0.02562 * 11 10 9 13 13 C 1.39299 * 120.42393 * 359.95647 * 12 11 10 14 14 N 1.39686 * 119.95237 * 180.02562 * 13 12 11 15 15 C 1.46497 * 119.99886 * 0.02562 * 14 13 12 16 16 C 1.53002 * 109.46941 * 179.97438 * 15 14 13 17 17 H 1.09004 * 115.56014 * 29.29975 * 16 15 14 18 18 C 1.53001 * 117.49830 * 243.60929 * 16 15 14 19 19 C 1.52989 * 60.03049 * 252.51996 * 18 16 15 20 20 C 1.52992 * 138.59321 * 229.08963 * 19 18 16 21 21 C 1.53002 * 138.58421 * 130.87609 * 19 18 16 22 22 C 1.38316 * 120.09643 * 0.29979 * 13 12 11 23 23 H 0.97001 * 119.99870 * 0.02562 * 1 2 3 24 24 H 1.07998 * 120.05141 * 359.97221 * 10 9 7 25 25 H 1.08000 * 119.84105 * 179.97438 * 11 10 9 26 26 H 1.08001 * 119.79204 * 179.97438 * 12 11 10 27 27 H 0.97002 * 119.99758 * 180.02562 * 14 13 12 28 28 H 1.09003 * 109.46796 * 60.00354 * 15 14 13 29 29 H 1.09002 * 109.47521 * 299.99790 * 15 14 13 30 30 H 1.09005 * 117.49679 * 145.01924 * 18 16 15 31 31 H 1.08991 * 117.50111 * 0.03033 * 18 16 15 32 32 H 1.09006 * 117.49529 * 336.60136 * 20 19 18 33 33 H 1.08999 * 117.50088 * 121.62118 * 20 19 18 34 34 H 1.08997 * 117.50214 * 238.38286 * 21 19 18 35 35 H 1.08999 * 117.49660 * 23.40982 * 21 19 18 36 36 H 1.08001 * 120.16696 * 179.70140 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4397 2.6527 0.7001 6 1 3.5398 1.4402 0.7001 7 6 2.0079 -1.2118 -0.0005 8 1 3.0494 -1.2341 0.2844 9 6 1.3513 -2.4072 -0.3742 10 6 1.8273 -3.6501 0.0849 11 6 1.1835 -4.8096 -0.2832 12 6 0.0689 -4.7604 -1.1043 13 6 -0.4137 -3.5379 -1.5659 14 7 -1.5387 -3.4997 -2.3930 15 6 -2.2105 -4.7446 -2.7738 16 6 -3.4043 -4.4247 -3.6756 17 1 -3.3074 -3.5244 -4.2825 18 6 -4.7985 -4.7783 -3.1540 19 6 -4.1710 -5.6045 -4.2783 20 6 -4.5531 -6.1396 -5.6597 21 6 -3.9277 -7.0752 -4.6231 22 6 0.2229 -2.3623 -1.2112 23 1 -0.4850 0.8401 -0.0004 24 1 2.6966 -3.6936 0.7242 25 1 1.5496 -5.7626 0.0691 26 1 -0.4293 -5.6756 -1.3881 27 1 -1.8751 -2.6489 -2.7152 28 1 -2.5597 -5.2578 -1.8778 29 1 -1.5109 -5.3857 -3.3104 30 1 -5.6188 -4.1106 -3.4176 31 1 -4.8653 -5.2384 -2.1682 32 1 -5.6143 -6.2647 -5.8751 33 1 -3.9339 -5.8390 -6.5049 34 1 -2.8970 -7.3900 -4.7863 35 1 -4.5774 -7.8156 -4.1565 36 1 -0.1475 -1.4142 -1.5724 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705224249.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:49 Heat of formation + Delta-G solvation = 72.715560 kcal Electronic energy + Delta-G solvation = -16324.861387 eV Core-core repulsion = 13775.072091 eV Total energy + Delta-G solvation = -2549.789296 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.69300 -37.56779 -34.89634 -33.37343 -32.29761 -29.38839 -28.42332 -25.24630 -24.89253 -22.54075 -21.48893 -20.65769 -19.80845 -18.93996 -17.16142 -15.83555 -15.36420 -15.12201 -14.84498 -14.61695 -14.07822 -13.97097 -13.37285 -12.72114 -12.55839 -12.14302 -11.75871 -11.65206 -11.47853 -11.24416 -11.06377 -10.98557 -10.55691 -10.38761 -10.05562 -9.99545 -9.93000 -9.53215 -9.39701 -9.18318 -8.69580 -7.26852 -6.69022 -6.11557 -4.27330 2.90256 3.12335 3.16107 3.26987 3.37982 3.54616 3.60874 4.00852 4.12307 4.51111 4.75669 4.78976 4.84032 5.38419 5.44760 5.47461 5.53784 5.60451 5.72273 5.76869 5.85722 5.93987 6.00831 6.13262 6.30104 6.33174 6.63250 6.92417 7.15741 7.18142 7.42226 7.48910 7.85876 8.00739 8.15170 8.21769 8.53435 8.76367 8.88413 9.05487 9.16507 10.29836 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.032300 B = 0.004726 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.652611 B = 5923.232536 C = 6563.533392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.078 3.922 3 Si 0.904 3.096 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.466 4.466 8 H 0.076 0.924 9 C 0.139 3.861 10 C -0.257 4.257 11 C -0.066 4.066 12 C -0.300 4.300 13 C 0.216 3.784 14 N -0.759 5.759 15 C 0.169 3.831 16 C -0.106 4.106 17 H 0.108 0.892 18 C -0.124 4.124 19 C -0.227 4.227 20 C -0.132 4.132 21 C -0.130 4.130 22 C -0.232 4.232 23 H 0.277 0.723 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.390 0.610 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.208 -6.594 -7.689 13.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.496 4.496 8 H 0.094 0.906 9 C 0.136 3.864 10 C -0.278 4.278 11 C -0.085 4.085 12 C -0.323 4.323 13 C 0.117 3.883 14 N -0.393 5.393 15 C 0.044 3.956 16 C -0.125 4.125 17 H 0.126 0.874 18 C -0.160 4.160 19 C -0.227 4.227 20 C -0.169 4.169 21 C -0.167 4.167 22 C -0.256 4.256 23 H 0.088 0.912 24 H 0.106 0.894 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.223 0.777 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.447 -6.639 -7.671 13.201 hybrid contribution 0.123 1.078 -0.070 1.088 sum -8.324 -5.561 -7.742 12.655 Atomic orbital electron populations 1.69871 1.07496 1.28725 1.35786 1.25869 0.94663 1.01053 0.92330 0.86384 0.80568 0.80944 0.79187 1.19418 1.20471 1.18693 1.19562 0.98040 0.91315 1.40651 0.90585 1.17322 0.90111 0.91832 0.87158 1.20860 1.04760 0.92933 1.09231 1.20279 0.95128 0.96253 0.96845 1.19888 1.04514 0.94370 1.13515 1.17649 0.86196 0.94352 0.90073 1.44397 1.31690 1.06309 1.56932 1.20531 0.91169 0.88120 0.95792 1.22300 0.92908 0.96864 1.00389 0.87435 1.22840 0.96129 1.00584 0.96473 1.21485 1.07776 0.95139 0.98350 1.22643 1.00974 1.02202 0.91085 1.22624 1.01858 0.90546 1.01669 1.20727 1.02616 0.95035 1.07187 0.91229 0.89399 0.89657 0.89725 0.77706 0.93098 0.93123 0.88724 0.88391 0.88801 0.88724 0.88513 0.88706 0.86542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.96 10.96 55.55 0.61 -20.35 16 2 C 0.08 2.01 5.14 -17.35 -0.09 1.92 16 3 Si 0.90 19.11 29.59 -169.99 -5.03 14.08 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.47 -12.77 9.05 -37.74 -0.34 -13.11 16 8 H 0.08 2.01 7.91 -52.48 -0.41 1.60 16 9 C 0.14 3.85 5.57 -106.85 -0.60 3.25 16 10 C -0.26 -6.64 9.79 -38.84 -0.38 -7.02 16 11 C -0.07 -1.57 10.01 -39.70 -0.40 -1.97 16 12 C -0.30 -7.03 9.32 -39.08 -0.36 -7.40 16 13 C 0.22 5.18 6.64 -83.86 -0.56 4.62 16 14 N -0.76 -14.93 5.73 -58.68 -0.34 -15.27 16 15 C 0.17 2.76 5.19 -4.04 -0.02 2.74 16 16 C -0.11 -1.42 5.85 -90.58 -0.53 -1.95 16 17 H 0.11 1.40 8.04 -51.93 -0.42 0.99 16 18 C -0.12 -1.46 10.17 -26.74 -0.27 -1.73 16 19 C -0.23 -2.66 5.40 -154.48 -0.83 -3.50 16 20 C -0.13 -1.28 10.53 -26.73 -0.28 -1.56 16 21 C -0.13 -1.33 10.53 -26.73 -0.28 -1.61 16 22 C -0.23 -6.18 8.53 -38.67 -0.33 -6.51 16 23 H 0.28 6.66 8.30 -40.82 -0.34 6.33 16 24 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 25 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 26 H 0.08 1.80 6.70 -52.49 -0.35 1.45 16 27 H 0.39 7.25 8.41 -40.82 -0.34 6.90 16 28 H 0.05 0.86 7.67 -51.93 -0.40 0.46 16 29 H 0.05 0.85 7.94 -51.93 -0.41 0.44 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.10 1.15 8.03 -51.93 -0.42 0.74 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.12 3.19 6.16 -52.49 -0.32 2.87 16 LS Contribution 305.33 15.07 4.60 4.60 Total: -1.00 -28.64 305.33 -10.60 -39.24 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -5.17 Total: 11.51 kcal Atomic # 6 Polarization: -28.54 SS G_CDS: -5.27 Total: -33.81 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.27 Total: -35.62 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.64 -10.60 -39.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705224249.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.955 kcal (2) G-P(sol) polarization free energy of solvation -28.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds