Wall clock time and date at job start Mon Mar 30 2020 05:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86805 * 120.00119 * 2 1 4 4 H 1.48495 * 109.47177 * 270.00086 * 3 2 1 5 5 H 1.48506 * 109.46806 * 30.00075 * 3 2 1 6 6 H 1.48497 * 109.47067 * 149.99589 * 3 2 1 7 7 C 1.39924 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99823 * 197.73652 * 7 2 1 9 9 C 1.41409 * 120.00184 * 17.73738 * 7 2 1 10 10 C 1.40786 * 120.20983 * 204.34435 * 9 7 2 11 11 C 1.37640 * 119.89349 * 180.02562 * 10 9 7 12 12 C 1.38521 * 120.32708 * 0.02562 * 11 10 9 13 13 C 1.39299 * 120.42393 * 359.95647 * 12 11 10 14 14 N 1.39686 * 119.95237 * 180.02562 * 13 12 11 15 15 C 1.46497 * 119.99886 * 0.02562 * 14 13 12 16 16 C 1.53002 * 109.46941 * 179.97438 * 15 14 13 17 17 H 1.09004 * 115.56014 * 29.29975 * 16 15 14 18 18 C 1.53001 * 117.49830 * 243.60929 * 16 15 14 19 19 C 1.52989 * 60.03049 * 252.51996 * 18 16 15 20 20 C 1.52992 * 138.59321 * 229.08963 * 19 18 16 21 21 C 1.53002 * 138.58421 * 130.87609 * 19 18 16 22 22 C 1.38316 * 120.09643 * 0.29979 * 13 12 11 23 23 H 0.97001 * 119.99870 * 0.02562 * 1 2 3 24 24 H 1.07998 * 120.05141 * 359.97221 * 10 9 7 25 25 H 1.08000 * 119.84105 * 179.97438 * 11 10 9 26 26 H 1.08001 * 119.79204 * 179.97438 * 12 11 10 27 27 H 0.97002 * 119.99758 * 180.02562 * 14 13 12 28 28 H 1.09003 * 109.46796 * 60.00354 * 15 14 13 29 29 H 1.09002 * 109.47521 * 299.99790 * 15 14 13 30 30 H 1.09005 * 117.49679 * 145.01924 * 18 16 15 31 31 H 1.08991 * 117.50111 * 0.03033 * 18 16 15 32 32 H 1.09006 * 117.49529 * 336.60136 * 20 19 18 33 33 H 1.08999 * 117.50088 * 121.62118 * 20 19 18 34 34 H 1.08997 * 117.50214 * 238.38286 * 21 19 18 35 35 H 1.08999 * 117.49660 * 23.40982 * 21 19 18 36 36 H 1.08001 * 120.16696 * 179.70140 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4397 2.6527 0.7001 6 1 3.5398 1.4402 0.7001 7 6 2.0079 -1.2118 -0.0005 8 1 3.0494 -1.2341 0.2844 9 6 1.3513 -2.4072 -0.3742 10 6 1.8273 -3.6501 0.0849 11 6 1.1835 -4.8096 -0.2832 12 6 0.0689 -4.7604 -1.1043 13 6 -0.4137 -3.5379 -1.5659 14 7 -1.5387 -3.4997 -2.3930 15 6 -2.2105 -4.7446 -2.7738 16 6 -3.4043 -4.4247 -3.6756 17 1 -3.3074 -3.5244 -4.2825 18 6 -4.7985 -4.7783 -3.1540 19 6 -4.1710 -5.6045 -4.2783 20 6 -4.5531 -6.1396 -5.6597 21 6 -3.9277 -7.0752 -4.6231 22 6 0.2229 -2.3623 -1.2112 23 1 -0.4850 0.8401 -0.0004 24 1 2.6966 -3.6936 0.7242 25 1 1.5496 -5.7626 0.0691 26 1 -0.4293 -5.6756 -1.3881 27 1 -1.8751 -2.6489 -2.7152 28 1 -2.5597 -5.2578 -1.8778 29 1 -1.5109 -5.3857 -3.3104 30 1 -5.6188 -4.1106 -3.4176 31 1 -4.8653 -5.2384 -2.1682 32 1 -5.6143 -6.2647 -5.8751 33 1 -3.9339 -5.8390 -6.5049 34 1 -2.8970 -7.3900 -4.7863 35 1 -4.5774 -7.8156 -4.1565 36 1 -0.1475 -1.4142 -1.5724 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705224249.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:49 Heat of formation + Delta-G solvation = 58.762001 kcal Electronic energy + Delta-G solvation = -16325.466458 eV Core-core repulsion = 13775.072091 eV Total energy + Delta-G solvation = -2550.394367 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.91968 -39.15440 -36.50114 -35.14914 -33.48305 -31.34947 -30.08336 -27.15085 -26.44676 -23.31608 -23.10698 -22.06960 -21.58659 -19.93937 -19.06514 -17.56320 -16.72084 -16.49014 -16.32823 -15.89657 -15.54464 -15.32992 -14.78327 -14.46321 -14.28674 -13.97523 -13.42635 -13.02486 -12.76476 -12.61335 -12.41137 -12.31397 -12.26617 -12.06119 -11.58866 -11.32502 -11.15667 -10.94424 -10.84623 -10.81167 -10.41873 -9.26089 -8.61907 -7.92575 -6.32349 1.08152 1.32564 1.39055 1.52186 1.58797 2.23580 2.50960 2.74325 2.81527 2.95991 3.41755 3.80497 3.87061 3.93129 4.26934 4.44267 4.50641 4.55868 4.74891 4.76137 4.79410 4.80826 4.84569 4.93320 4.98748 5.01139 5.18998 5.20429 5.27309 5.30422 5.44676 5.59646 5.95517 6.10026 6.21129 6.25364 6.57659 6.93665 7.03927 7.06155 7.24215 8.38818 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.032300 B = 0.004726 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.652611 B = 5923.232536 C = 6563.533392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.037 3.963 3 Si 0.981 3.019 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.505 4.505 8 H 0.072 0.928 9 C 0.109 3.891 10 C -0.284 4.284 11 C -0.062 4.062 12 C -0.305 4.305 13 C 0.218 3.782 14 N -0.753 5.753 15 C 0.173 3.827 16 C -0.121 4.121 17 H 0.108 0.892 18 C -0.118 4.118 19 C -0.239 4.239 20 C -0.120 4.120 21 C -0.130 4.130 22 C -0.260 4.260 23 H 0.285 0.715 24 H 0.091 0.909 25 H 0.119 0.881 26 H 0.110 0.890 27 H 0.393 0.607 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.189 -7.193 -8.576 14.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.177 4.177 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.183 1.183 7 C -0.534 4.534 8 H 0.091 0.909 9 C 0.106 3.894 10 C -0.305 4.305 11 C -0.081 4.081 12 C -0.328 4.328 13 C 0.117 3.883 14 N -0.386 5.386 15 C 0.048 3.952 16 C -0.140 4.140 17 H 0.126 0.874 18 C -0.155 4.155 19 C -0.239 4.239 20 C -0.157 4.157 21 C -0.167 4.167 22 C -0.284 4.284 23 H 0.096 0.904 24 H 0.110 0.890 25 H 0.137 0.863 26 H 0.128 0.872 27 H 0.227 0.773 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.126 0.874 31 H 0.114 0.886 32 H 0.129 0.871 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.126 0.874 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.459 -7.263 -8.577 14.689 hybrid contribution 0.349 1.138 0.166 1.201 sum -9.110 -6.126 -8.410 13.829 Atomic orbital electron populations 1.69926 1.08943 1.30152 1.35822 1.26724 0.95477 1.04318 0.91216 0.85233 0.79105 0.76059 0.79432 1.18770 1.19191 1.18309 1.19824 0.98235 0.92696 1.42679 0.90946 1.17722 0.90956 0.92893 0.87836 1.21034 1.05722 0.93315 1.10435 1.20649 0.94567 0.96996 0.95846 1.20219 1.04487 0.95025 1.13056 1.17788 0.86837 0.93861 0.89827 1.44513 1.30476 1.07958 1.55620 1.20599 0.91995 0.86414 0.96145 1.22114 0.92589 0.98185 1.01084 0.87426 1.22874 0.95299 1.00652 0.96638 1.21629 1.06659 0.95677 0.99967 1.22793 1.02122 1.00553 0.90186 1.22771 1.02294 0.89969 1.01681 1.20666 1.03657 0.95404 1.08713 0.90421 0.89044 0.86286 0.87228 0.77318 0.93474 0.93391 0.87359 0.88569 0.87060 0.88245 0.88614 0.87371 0.88170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.45 10.96 21.82 0.24 -44.21 16 2 C 0.04 1.96 5.14 85.25 0.44 2.40 16 3 Si 0.98 39.54 29.59 68.60 2.03 41.57 16 4 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 5 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 6 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 7 C -0.50 -28.63 9.05 23.46 0.21 -28.42 16 8 H 0.07 3.98 7.91 -2.91 -0.02 3.96 16 9 C 0.11 6.24 5.57 -21.31 -0.12 6.12 16 10 C -0.28 -14.94 9.79 22.75 0.22 -14.72 16 11 C -0.06 -2.89 10.01 22.20 0.22 -2.67 16 12 C -0.31 -14.01 9.32 22.59 0.21 -13.80 16 13 C 0.22 10.52 6.64 38.16 0.25 10.77 16 14 N -0.75 -29.52 5.73 -339.58 -1.95 -31.47 16 15 C 0.17 5.45 5.19 86.38 0.45 5.90 16 16 C -0.12 -3.08 5.85 -10.77 -0.06 -3.14 16 17 H 0.11 2.71 8.04 -2.38 -0.02 2.69 16 18 C -0.12 -2.56 10.17 30.59 0.31 -2.25 16 19 C -0.24 -5.07 5.40 -52.17 -0.28 -5.35 16 20 C -0.12 -1.98 10.53 30.59 0.32 -1.65 16 21 C -0.13 -2.32 10.53 30.60 0.32 -2.00 16 22 C -0.26 -14.32 8.53 22.86 0.20 -14.13 16 23 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 24 H 0.09 4.57 8.06 -2.91 -0.02 4.55 16 25 H 0.12 4.65 8.06 -2.91 -0.02 4.62 16 26 H 0.11 4.43 6.70 -2.91 -0.02 4.41 16 27 H 0.39 14.75 8.41 -92.71 -0.78 13.97 16 28 H 0.05 1.53 7.67 -2.39 -0.02 1.51 16 29 H 0.05 1.54 7.94 -2.39 -0.02 1.53 16 30 H 0.11 2.02 8.14 -2.38 -0.02 2.01 16 31 H 0.10 2.10 8.03 -2.39 -0.02 2.08 16 32 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.10 5.73 6.16 -2.91 -0.02 5.71 16 Total: -1.00 -62.40 305.33 3.31 -59.09 By element: Atomic # 1 Polarization: 37.66 SS G_CDS: 0.29 Total: 37.96 kcal Atomic # 6 Polarization: -65.63 SS G_CDS: 2.70 Total: -62.94 kcal Atomic # 7 Polarization: -73.97 SS G_CDS: -1.71 Total: -75.68 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -62.40 3.31 -59.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705224249.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.849 kcal (2) G-P(sol) polarization free energy of solvation -62.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds