Wall clock time and date at job start Mon Mar 30 2020 05:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00145 * 2 1 4 4 H 1.48504 * 109.47179 * 239.99634 * 3 2 1 5 5 H 1.48502 * 109.47530 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47280 * 119.99824 * 3 2 1 7 7 C 1.37878 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00204 * 175.64228 * 7 2 1 9 9 C 1.50700 * 119.99793 * 355.63728 * 7 2 1 10 10 H 1.09000 * 109.46922 * 305.98777 * 9 7 2 11 11 C 1.50700 * 109.46901 * 185.99141 * 9 7 2 12 12 C 1.38236 * 120.00214 * 94.95983 * 11 9 7 13 13 C 1.38233 * 119.99795 * 179.72141 * 12 11 9 14 14 C 1.38232 * 120.00203 * 0.27859 * 13 12 11 15 15 C 1.38237 * 120.00173 * 359.95673 * 14 13 12 16 16 C 1.38229 * 119.99570 * 0.02562 * 15 14 13 17 17 N 1.46896 * 109.47145 * 65.98904 * 9 7 2 18 18 C 1.48533 * 110.99878 * 27.46569 * 17 9 7 19 19 C 1.54159 * 103.62653 * 201.00499 * 18 17 9 20 20 C 1.54564 * 103.30217 * 36.37130 * 19 18 17 21 21 H 1.08996 * 117.57752 * 118.18005 * 20 19 18 22 22 C 1.55092 * 119.00120 * 276.08785 * 20 19 18 23 23 C 1.47943 * 111.00156 * 270.09637 * 17 9 7 24 24 H 1.09002 * 117.37132 * 5.35361 * 23 17 9 25 25 H 0.97011 * 119.99648 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.99984 * 359.97438 * 12 11 9 27 27 H 1.08003 * 119.99441 * 180.25578 * 13 12 11 28 28 H 1.08005 * 119.99662 * 179.97438 * 14 13 12 29 29 H 1.07994 * 120.00177 * 180.02562 * 15 14 13 30 30 H 1.08006 * 120.00121 * 179.97438 * 16 15 14 31 31 H 1.08997 * 110.66715 * 318.78867 * 18 17 9 32 32 H 1.09010 * 110.66421 * 81.91589 * 18 17 9 33 33 H 1.09002 * 109.55287 * 278.34879 * 19 18 17 34 34 H 1.09005 * 111.53968 * 155.33045 * 19 18 17 35 35 H 1.09007 * 117.97455 * 343.81756 * 22 20 19 36 36 H 1.09002 * 117.21944 * 198.58467 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0821 -1.1955 -0.0705 9 6 1.2542 -2.4972 0.1004 10 1 0.6059 -2.4769 0.9764 11 6 2.2358 -3.6335 0.2281 12 6 2.5781 -4.1140 1.4783 13 6 3.4741 -5.1601 1.5951 14 6 4.0323 -5.7218 0.4621 15 6 3.6938 -5.2381 -0.7879 16 6 2.7975 -4.1923 -0.9047 17 7 0.4397 -2.6871 -1.1073 18 6 1.0412 -1.9862 -2.2705 19 6 -0.1411 -1.8205 -3.2458 20 6 -1.3405 -1.5523 -2.3084 21 1 -1.8548 -0.5965 -2.4079 22 6 -2.0794 -2.7569 -1.6694 23 6 -0.9075 -2.1002 -0.9359 24 1 -1.0982 -1.5425 -0.0190 25 1 -0.4850 0.8402 0.0004 26 1 2.1423 -3.6748 2.3635 27 1 3.7383 -5.5382 2.5716 28 1 4.7327 -6.5389 0.5535 29 1 4.1296 -5.6773 -1.6730 30 1 2.5333 -3.8140 -1.8812 31 1 1.4198 -1.0074 -1.9762 32 1 1.8336 -2.5887 -2.7150 33 1 -0.2867 -2.7459 -3.8032 34 1 0.0138 -0.9811 -3.9236 35 1 -1.9134 -3.7449 -2.0989 36 1 -3.0810 -2.5772 -1.2788 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706969224.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:10 Heat of formation + Delta-G solvation = 81.067383 kcal Electronic energy + Delta-G solvation = -17911.241998 eV Core-core repulsion = 15361.814865 eV Total energy + Delta-G solvation = -2549.427134 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.04843 -37.87620 -34.09069 -31.72530 -30.41794 -29.85618 -28.70409 -26.08653 -23.44690 -22.08318 -21.45568 -20.09154 -19.31613 -18.86904 -16.47972 -16.10690 -15.10350 -14.81871 -14.24710 -14.11444 -13.59806 -12.97229 -12.68954 -12.43572 -12.36629 -12.01921 -11.76612 -11.55156 -11.07438 -10.98846 -10.68789 -10.66266 -10.40430 -10.27713 -9.87419 -9.65567 -9.44990 -9.07997 -8.72715 -8.35741 -8.16297 -7.77367 -6.75248 -6.07178 -4.30734 2.16848 2.22997 3.19511 3.25147 3.28750 4.23138 4.63991 4.77593 5.01266 5.33157 5.56526 5.64915 5.74496 5.88259 5.96876 6.04595 6.24123 6.26927 6.37703 6.49177 6.58736 6.60373 6.67166 6.73341 6.76438 6.86703 7.00709 7.12011 7.21063 7.21425 7.31913 7.51354 7.54921 7.71395 7.82564 7.83814 7.98193 8.48995 8.68684 8.76704 9.34506 10.76622 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.018728 B = 0.010640 C = 0.008011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.733977 B = 2631.003815 C = 3494.156552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.068 3.932 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.223 3.777 10 H 0.048 0.952 11 C -0.021 4.021 12 C -0.126 4.126 13 C -0.128 4.128 14 C -0.150 4.150 15 C -0.131 4.131 16 C -0.109 4.109 17 N -0.493 5.493 18 C 0.044 3.956 19 C -0.091 4.091 20 C -0.187 4.187 21 H 0.089 0.911 22 C -0.190 4.190 23 C 0.061 3.939 24 H 0.156 0.844 25 H 0.264 0.736 26 H 0.114 0.886 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.125 0.875 31 H 0.085 0.915 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.467 -4.780 -1.372 5.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.135 4.135 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.077 0.923 9 C 0.117 3.883 10 H 0.066 0.934 11 C -0.022 4.022 12 C -0.144 4.144 13 C -0.146 4.146 14 C -0.169 4.169 15 C -0.149 4.149 16 C -0.127 4.127 17 N -0.216 5.216 18 C -0.083 4.083 19 C -0.129 4.129 20 C -0.206 4.206 21 H 0.108 0.892 22 C -0.229 4.229 23 C -0.048 4.048 24 H 0.172 0.828 25 H 0.075 0.925 26 H 0.132 0.868 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.143 0.857 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.319 -5.207 -1.434 5.560 hybrid contribution 0.498 1.800 0.043 1.868 sum 1.816 -3.407 -1.391 4.103 Atomic orbital electron populations 1.69813 1.05531 1.26315 1.49335 1.24992 0.95028 0.99187 0.94300 0.86564 0.79597 0.82583 0.78859 1.20152 1.21203 1.20130 1.21371 0.93873 0.90302 1.50787 0.92305 1.18509 0.89979 0.89113 0.90723 0.93376 1.20372 0.95197 0.94641 0.91976 1.20995 0.98962 0.96939 0.97546 1.20944 0.98482 0.97551 0.97670 1.20853 1.01820 1.01126 0.93057 1.21060 0.99150 0.98011 0.96721 1.21260 0.96094 0.95770 0.99582 1.64531 1.01233 1.50819 1.04992 1.23356 0.94832 1.00386 0.89715 1.21875 0.95042 0.99111 0.96909 1.23408 1.01119 0.96603 0.99478 0.89238 1.23561 0.96971 0.95873 1.06498 1.24212 0.87637 0.95382 0.97593 0.82760 0.92510 0.86826 0.87371 0.87584 0.87453 0.85745 0.89686 0.93037 0.93351 0.92774 0.90611 0.90214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.78 8.63 55.43 0.48 -21.30 16 2 C 0.07 1.69 3.94 -17.82 -0.07 1.62 16 3 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.52 -13.18 6.54 -34.44 -0.23 -13.41 16 8 H 0.06 1.53 7.75 -52.49 -0.41 1.13 16 9 C 0.22 5.30 2.19 -70.02 -0.15 5.15 16 10 H 0.05 1.24 7.52 -51.93 -0.39 0.85 16 11 C -0.02 -0.46 4.93 -104.62 -0.52 -0.97 16 12 C -0.13 -2.48 9.68 -39.58 -0.38 -2.86 16 13 C -0.13 -2.20 10.05 -39.59 -0.40 -2.60 16 14 C -0.15 -2.49 10.05 -39.58 -0.40 -2.88 16 15 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 16 C -0.11 -2.20 9.24 -39.58 -0.37 -2.57 16 17 N -0.49 -11.24 4.64 -217.87 -1.01 -12.25 16 18 C 0.04 0.97 5.30 -2.31 -0.01 0.96 16 19 C -0.09 -1.83 6.85 -25.30 -0.17 -2.00 16 20 C -0.19 -3.89 7.00 -88.18 -0.62 -4.51 16 21 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 22 C -0.19 -3.76 10.38 -25.59 -0.27 -4.03 16 23 C 0.06 1.38 4.41 -66.59 -0.29 1.09 16 24 H 0.16 3.85 5.39 -51.93 -0.28 3.57 16 25 H 0.26 6.47 8.31 -40.81 -0.34 6.13 16 26 H 0.11 2.14 8.06 -52.48 -0.42 1.72 16 27 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 28 H 0.11 1.45 8.06 -52.48 -0.42 1.02 16 29 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.12 2.54 4.87 -52.48 -0.26 2.28 16 31 H 0.09 2.09 4.77 -51.93 -0.25 1.85 16 32 H 0.05 1.08 5.83 -51.92 -0.30 0.78 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 282.10 15.07 4.25 4.25 Total: -1.00 -25.03 282.10 -10.39 -35.42 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -4.82 Total: 8.55 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: -4.27 Total: -29.72 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: -0.53 Total: -33.56 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -25.03 -10.39 -35.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706969224.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.489 kcal (2) G-P(sol) polarization free energy of solvation -25.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds