Wall clock time and date at job start Mon Mar 30 2020 05:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00145 * 2 1 4 4 H 1.48504 * 109.47179 * 239.99634 * 3 2 1 5 5 H 1.48502 * 109.47530 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47280 * 119.99824 * 3 2 1 7 7 C 1.37878 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00204 * 175.64228 * 7 2 1 9 9 C 1.50700 * 119.99793 * 355.63728 * 7 2 1 10 10 H 1.09000 * 109.46922 * 305.98777 * 9 7 2 11 11 C 1.50700 * 109.46901 * 185.99141 * 9 7 2 12 12 C 1.38236 * 120.00214 * 94.95983 * 11 9 7 13 13 C 1.38233 * 119.99795 * 179.72141 * 12 11 9 14 14 C 1.38232 * 120.00203 * 0.27859 * 13 12 11 15 15 C 1.38237 * 120.00173 * 359.95673 * 14 13 12 16 16 C 1.38229 * 119.99570 * 0.02562 * 15 14 13 17 17 N 1.46896 * 109.47145 * 65.98904 * 9 7 2 18 18 C 1.48533 * 110.99878 * 27.46569 * 17 9 7 19 19 C 1.54159 * 103.62653 * 201.00499 * 18 17 9 20 20 C 1.54564 * 103.30217 * 36.37130 * 19 18 17 21 21 H 1.08996 * 117.57752 * 118.18005 * 20 19 18 22 22 C 1.55092 * 119.00120 * 276.08785 * 20 19 18 23 23 C 1.47943 * 111.00156 * 270.09637 * 17 9 7 24 24 H 1.09002 * 117.37132 * 5.35361 * 23 17 9 25 25 H 0.97011 * 119.99648 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.99984 * 359.97438 * 12 11 9 27 27 H 1.08003 * 119.99441 * 180.25578 * 13 12 11 28 28 H 1.08005 * 119.99662 * 179.97438 * 14 13 12 29 29 H 1.07994 * 120.00177 * 180.02562 * 15 14 13 30 30 H 1.08006 * 120.00121 * 179.97438 * 16 15 14 31 31 H 1.08997 * 110.66715 * 318.78867 * 18 17 9 32 32 H 1.09010 * 110.66421 * 81.91589 * 18 17 9 33 33 H 1.09002 * 109.55287 * 278.34879 * 19 18 17 34 34 H 1.09005 * 111.53968 * 155.33045 * 19 18 17 35 35 H 1.09007 * 117.97455 * 343.81756 * 22 20 19 36 36 H 1.09002 * 117.21944 * 198.58467 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0821 -1.1955 -0.0705 9 6 1.2542 -2.4972 0.1004 10 1 0.6059 -2.4769 0.9764 11 6 2.2358 -3.6335 0.2281 12 6 2.5781 -4.1140 1.4783 13 6 3.4741 -5.1601 1.5951 14 6 4.0323 -5.7218 0.4621 15 6 3.6938 -5.2381 -0.7879 16 6 2.7975 -4.1923 -0.9047 17 7 0.4397 -2.6871 -1.1073 18 6 1.0412 -1.9862 -2.2705 19 6 -0.1411 -1.8205 -3.2458 20 6 -1.3405 -1.5523 -2.3084 21 1 -1.8548 -0.5965 -2.4079 22 6 -2.0794 -2.7569 -1.6694 23 6 -0.9075 -2.1002 -0.9359 24 1 -1.0982 -1.5425 -0.0190 25 1 -0.4850 0.8402 0.0004 26 1 2.1423 -3.6748 2.3635 27 1 3.7383 -5.5382 2.5716 28 1 4.7327 -6.5389 0.5535 29 1 4.1296 -5.6773 -1.6730 30 1 2.5333 -3.8140 -1.8812 31 1 1.4198 -1.0074 -1.9762 32 1 1.8336 -2.5887 -2.7150 33 1 -0.2867 -2.7459 -3.8032 34 1 0.0138 -0.9811 -3.9236 35 1 -1.9134 -3.7449 -2.0989 36 1 -3.0810 -2.5772 -1.2788 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706969224.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:10 Heat of formation + Delta-G solvation = 69.179742 kcal Electronic energy + Delta-G solvation = -17911.757485 eV Core-core repulsion = 15361.814865 eV Total energy + Delta-G solvation = -2549.942620 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.70248 -39.40096 -35.84269 -33.54070 -31.97042 -31.35965 -30.31753 -27.93674 -25.15479 -23.66907 -22.97164 -21.65270 -21.02128 -20.61363 -18.33530 -17.67611 -16.78005 -16.55126 -15.81453 -15.64205 -15.21912 -14.75762 -14.17969 -14.14950 -13.96845 -13.60011 -13.36438 -13.21325 -12.84663 -12.73760 -12.43885 -12.26157 -12.10098 -11.87778 -11.49851 -11.36715 -11.24497 -10.76896 -10.56788 -10.13208 -9.59719 -9.29836 -8.53669 -7.96472 -6.27248 0.72310 0.78451 1.37390 1.40105 1.46074 2.36553 3.01760 3.13211 3.19387 3.65105 4.20734 4.23254 4.29045 4.31340 4.43987 4.46631 4.58860 4.79379 4.80829 4.92735 4.97535 5.01801 5.05753 5.07997 5.15847 5.35003 5.38061 5.47951 5.55813 5.61749 5.75483 5.79256 5.84197 5.94010 6.04996 6.17812 6.39691 6.67827 6.76463 6.92929 7.39017 8.82857 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.018728 B = 0.010640 C = 0.008011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.733977 B = 2631.003815 C = 3494.156552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.037 3.963 3 Si 0.944 3.056 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.278 1.278 7 C -0.535 4.535 8 H 0.042 0.958 9 C 0.230 3.770 10 H 0.012 0.988 11 C -0.052 4.052 12 C -0.146 4.146 13 C -0.124 4.124 14 C -0.142 4.142 15 C -0.129 4.129 16 C -0.126 4.126 17 N -0.488 5.488 18 C 0.045 3.955 19 C -0.086 4.086 20 C -0.184 4.184 21 H 0.087 0.913 22 C -0.164 4.164 23 C 0.032 3.968 24 H 0.128 0.872 25 H 0.262 0.738 26 H 0.108 0.892 27 H 0.141 0.859 28 H 0.146 0.854 29 H 0.138 0.862 30 H 0.116 0.884 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.279 -6.237 -2.086 6.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.165 4.165 3 Si 0.771 3.229 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.204 1.204 7 C -0.574 4.574 8 H 0.060 0.940 9 C 0.123 3.877 10 H 0.030 0.970 11 C -0.053 4.053 12 C -0.165 4.165 13 C -0.142 4.142 14 C -0.160 4.160 15 C -0.147 4.147 16 C -0.144 4.144 17 N -0.211 5.211 18 C -0.082 4.082 19 C -0.124 4.124 20 C -0.203 4.203 21 H 0.106 0.894 22 C -0.203 4.203 23 C -0.078 4.078 24 H 0.145 0.855 25 H 0.072 0.928 26 H 0.126 0.874 27 H 0.159 0.841 28 H 0.164 0.836 29 H 0.156 0.844 30 H 0.133 0.867 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.124 -6.669 -2.148 7.321 hybrid contribution 0.270 2.200 0.314 2.239 sum 2.394 -4.469 -1.834 5.391 Atomic orbital electron populations 1.70011 1.06016 1.26375 1.49246 1.25498 0.95726 1.01193 0.94114 0.85821 0.78603 0.79998 0.78475 1.20129 1.20877 1.20390 1.21398 0.93048 0.91540 1.51424 0.93961 1.18294 0.89814 0.89842 0.89745 0.97047 1.20301 0.96215 0.95189 0.93554 1.21118 1.00305 0.98362 0.96705 1.21306 0.96975 0.96124 0.99754 1.21328 1.01293 1.01269 0.92099 1.21404 0.97916 0.96762 0.98634 1.21261 0.97466 0.97146 0.98577 1.64625 1.01244 1.50488 1.04725 1.23309 0.95892 0.98905 0.90125 1.21857 0.93556 1.00425 0.96521 1.23484 1.01369 0.97121 0.98334 0.89447 1.23577 0.96688 0.95670 1.04336 1.24051 0.88698 0.97522 0.97537 0.85546 0.92818 0.87419 0.84148 0.83580 0.84424 0.86666 0.92517 0.92268 0.91798 0.91462 0.89936 0.88262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.31 8.63 21.45 0.19 -45.13 16 2 C 0.04 1.87 3.94 84.66 0.33 2.21 16 3 Si 0.94 42.00 29.54 68.60 2.03 44.02 16 4 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.53 -28.02 6.54 25.60 0.17 -27.85 16 8 H 0.04 2.30 7.75 -2.91 -0.02 2.27 16 9 C 0.23 11.41 2.19 43.42 0.10 11.51 16 10 H 0.01 0.64 7.52 -2.39 -0.02 0.62 16 11 C -0.05 -2.30 4.93 -19.86 -0.10 -2.39 16 12 C -0.15 -5.80 9.68 22.27 0.22 -5.59 16 13 C -0.12 -3.95 10.05 22.27 0.22 -3.73 16 14 C -0.14 -4.17 10.05 22.27 0.22 -3.95 16 15 C -0.13 -4.19 10.05 22.27 0.22 -3.97 16 16 C -0.13 -5.06 9.24 22.27 0.21 -4.85 16 17 N -0.49 -22.76 4.64 -843.21 -3.91 -26.67 16 18 C 0.04 2.00 5.30 86.38 0.46 2.46 16 19 C -0.09 -3.34 6.85 31.52 0.22 -3.12 16 20 C -0.18 -7.52 7.00 -9.21 -0.06 -7.59 16 21 H 0.09 3.59 8.14 -2.39 -0.02 3.57 16 22 C -0.16 -6.29 10.38 31.33 0.33 -5.96 16 23 C 0.03 1.45 4.41 45.07 0.20 1.65 16 24 H 0.13 6.58 5.39 -2.39 -0.01 6.57 16 25 H 0.26 13.13 8.31 -92.70 -0.77 12.36 16 26 H 0.11 4.23 8.06 -2.91 -0.02 4.21 16 27 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 28 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 29 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 30 H 0.12 4.71 4.87 -2.91 -0.01 4.70 16 31 H 0.06 2.86 4.77 -2.39 -0.01 2.85 16 32 H 0.06 2.50 5.83 -2.38 -0.01 2.49 16 33 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 35 H 0.08 3.06 8.14 -2.38 -0.02 3.04 16 36 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 Total: -1.00 -54.98 282.10 2.09 -52.89 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 1.07 Total: 26.07 kcal Atomic # 6 Polarization: -53.91 SS G_CDS: 2.72 Total: -51.18 kcal Atomic # 7 Polarization: -68.07 SS G_CDS: -3.73 Total: -71.80 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Total: -54.98 2.09 -52.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706969224.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.068 kcal (2) G-P(sol) polarization free energy of solvation -54.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds