Wall clock time and date at job start Mon Mar 30 2020 05:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86792 * 119.99882 * 2 1 4 4 H 1.48502 * 109.47066 * 264.64984 * 3 2 1 5 5 H 1.48507 * 109.47485 * 24.64819 * 3 2 1 6 6 H 1.48494 * 109.47520 * 144.65178 * 3 2 1 7 7 C 1.37881 * 119.99895 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99884 * 4.82863 * 7 2 1 9 9 C 1.50697 * 119.99666 * 184.54779 * 7 2 1 10 10 H 1.09008 * 109.47308 * 355.32586 * 9 7 2 11 11 C 1.50695 * 109.47429 * 235.31949 * 9 7 2 12 12 C 1.38241 * 120.00096 * 284.98922 * 11 9 7 13 13 C 1.38232 * 120.00249 * 179.78372 * 12 11 9 14 14 C 1.38237 * 119.99728 * 0.44322 * 13 12 11 15 15 C 1.38234 * 119.99991 * 359.81663 * 14 13 12 16 16 C 1.38230 * 120.00068 * 359.96632 * 15 14 13 17 17 N 1.46904 * 109.46871 * 115.31765 * 9 7 2 18 18 C 1.48528 * 110.99888 * 177.62760 * 17 9 7 19 19 C 1.54937 * 103.23057 * 159.65083 * 18 17 9 20 20 C 1.54554 * 102.94010 * 322.53771 * 19 18 17 21 21 H 1.09003 * 118.10165 * 242.44148 * 20 19 18 22 22 C 1.52933 * 118.20299 * 85.57219 * 20 19 18 23 23 C 1.47940 * 111.00111 * 294.99860 * 17 9 7 24 24 H 1.09000 * 117.37327 * 355.70287 * 23 17 9 25 25 H 0.96998 * 120.00009 * 0.02562 * 1 2 3 26 26 H 1.07999 * 119.99250 * 359.97438 * 12 11 9 27 27 H 1.07998 * 120.00020 * 180.27535 * 13 12 11 28 28 H 1.08002 * 119.99774 * 179.82538 * 14 13 12 29 29 H 1.08005 * 119.99539 * 180.02562 * 15 14 13 30 30 H 1.08001 * 119.99841 * 180.02562 * 16 15 14 31 31 H 1.09007 * 110.66900 * 278.08577 * 18 17 9 32 32 H 1.09006 * 110.67063 * 41.21524 * 18 17 9 33 33 H 1.09000 * 110.72490 * 204.16988 * 19 18 17 34 34 H 1.09003 * 110.87003 * 80.96595 * 19 18 17 35 35 H 1.09007 * 117.45951 * 160.64881 * 22 20 19 36 36 H 1.09001 * 117.43477 * 15.87914 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6096 1.9811 -1.3940 5 1 1.3945 2.6827 0.5839 6 1 3.4855 1.4755 0.8100 7 6 2.0045 -1.1941 0.0005 8 1 1.4674 -2.1277 -0.0778 9 6 3.5079 -1.1960 0.1040 10 1 3.8748 -0.1697 0.0856 11 6 4.0905 -1.9587 -1.0578 12 6 4.0285 -3.3395 -1.0791 13 6 4.5589 -4.0389 -2.1469 14 6 5.1595 -3.3579 -3.1893 15 6 5.2262 -1.9774 -3.1655 16 6 4.6918 -1.2778 -2.0998 17 7 3.9112 -1.8376 1.3625 18 6 5.3907 -1.9089 1.4733 19 6 5.6239 -2.0935 2.9939 20 6 4.5309 -1.1998 3.6227 21 1 4.8476 -0.3558 4.2355 22 6 3.1376 -1.7967 3.8255 23 6 3.4575 -1.0488 2.5289 24 1 2.9685 -0.0952 2.3295 25 1 -0.4850 0.8400 -0.0004 26 1 3.5630 -3.8717 -0.2627 27 1 4.5066 -5.1175 -2.1656 28 1 5.5764 -3.9045 -4.0223 29 1 5.6951 -1.4454 -3.9802 30 1 4.7436 -0.1992 -2.0815 31 1 5.7773 -2.7637 0.9183 32 1 5.8478 -0.9832 1.1236 33 1 6.6171 -1.7450 3.2769 34 1 5.4848 -3.1349 3.2845 35 1 2.4788 -1.3037 4.5406 36 1 3.0428 -2.8811 3.7699 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706969225.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:12 Heat of formation + Delta-G solvation = 51.658840 kcal Electronic energy + Delta-G solvation = -17696.474831 eV Core-core repulsion = 15145.772448 eV Total energy + Delta-G solvation = -2550.702384 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.93075 -39.58409 -35.91221 -34.11741 -32.04832 -31.59184 -30.66773 -28.31248 -24.62251 -23.94472 -23.33751 -21.91404 -21.11900 -20.79012 -19.11380 -17.72355 -17.21582 -16.41176 -16.18659 -15.56011 -15.35403 -14.83378 -14.66422 -14.35233 -14.08955 -13.92802 -13.57101 -13.42702 -13.19720 -12.87048 -12.63792 -12.39518 -12.00314 -11.88058 -11.79228 -11.55689 -11.41720 -11.12928 -10.85023 -10.68758 -9.66397 -9.36920 -8.88402 -8.35442 -6.37079 0.63968 0.69156 1.21355 1.23203 1.31017 2.22384 2.71419 2.91511 3.14231 3.31700 3.86090 3.95978 4.12854 4.23745 4.29723 4.32014 4.38524 4.43231 4.45733 4.52689 4.70082 4.80810 4.86642 4.91636 4.92758 5.02795 5.13292 5.14602 5.25666 5.32876 5.42416 5.46859 5.70802 5.74725 5.96652 6.12105 6.25976 6.33760 6.61203 6.70655 7.26489 8.81609 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.016040 B = 0.012178 C = 0.008312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.187284 B = 2298.607711 C = 3367.983008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.026 3.974 3 Si 0.924 3.076 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.253 1.253 7 C -0.480 4.480 8 H 0.032 0.968 9 C 0.210 3.790 10 H 0.010 0.990 11 C -0.059 4.059 12 C -0.113 4.113 13 C -0.125 4.125 14 C -0.136 4.136 15 C -0.120 4.120 16 C -0.152 4.152 17 N -0.492 5.492 18 C 0.033 3.967 19 C -0.082 4.082 20 C -0.174 4.174 21 H 0.123 0.877 22 C -0.137 4.137 23 C -0.015 4.015 24 H 0.077 0.923 25 H 0.267 0.733 26 H 0.107 0.893 27 H 0.140 0.860 28 H 0.150 0.850 29 H 0.143 0.857 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.027 0.973 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.832 -3.256 1.088 14.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.173 4.173 3 Si 0.749 3.251 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.177 1.177 7 C -0.519 4.519 8 H 0.051 0.949 9 C 0.104 3.896 10 H 0.028 0.972 11 C -0.060 4.060 12 C -0.131 4.131 13 C -0.143 4.143 14 C -0.154 4.154 15 C -0.138 4.138 16 C -0.170 4.170 17 N -0.216 5.216 18 C -0.095 4.095 19 C -0.119 4.119 20 C -0.193 4.193 21 H 0.141 0.859 22 C -0.175 4.175 23 C -0.125 4.125 24 H 0.094 0.906 25 H 0.076 0.924 26 H 0.125 0.875 27 H 0.158 0.842 28 H 0.167 0.833 29 H 0.161 0.839 30 H 0.124 0.876 31 H 0.098 0.902 32 H 0.046 0.954 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.123 0.877 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 13.445 -3.657 1.052 13.973 hybrid contribution -0.366 1.843 -0.098 1.881 sum 13.079 -1.814 0.954 13.239 Atomic orbital electron populations 1.70019 1.07844 1.27931 1.51961 1.25766 0.95332 1.01975 0.94220 0.86136 0.79309 0.80007 0.79632 1.18938 1.20829 1.17748 1.20817 0.89842 0.92876 1.48327 0.94923 1.18741 0.93717 0.91132 0.86046 0.97243 1.20167 0.94553 0.94834 0.96434 1.20954 0.99704 0.93612 0.98858 1.21414 0.98408 1.00664 0.93826 1.21360 1.00636 0.94180 0.99232 1.21308 0.99751 0.95026 0.97721 1.21119 1.00817 0.99469 0.95635 1.64479 1.08207 1.47840 1.01094 1.23503 0.88782 0.99770 0.97399 1.22051 0.97782 0.99736 0.92342 1.23804 0.90031 1.03019 1.02417 0.85877 1.23080 0.96685 1.00355 0.97386 1.23228 1.04382 0.97737 0.87109 0.90560 0.92391 0.87512 0.84219 0.83259 0.83907 0.87636 0.90250 0.95430 0.88606 0.90324 0.87690 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.40 13.96 21.45 0.30 -58.10 16 2 C 0.03 1.50 5.36 84.66 0.45 1.96 16 3 Si 0.92 44.34 25.91 68.60 1.78 46.12 16 4 H -0.26 -12.21 7.11 99.48 0.71 -11.51 16 5 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.25 -11.49 6.07 99.48 0.60 -10.88 16 7 C -0.48 -27.65 8.25 25.60 0.21 -27.43 16 8 H 0.03 2.14 8.06 -2.91 -0.02 2.12 16 9 C 0.21 10.07 1.39 43.42 0.06 10.13 16 10 H 0.01 0.49 4.31 -2.38 -0.01 0.48 16 11 C -0.06 -2.54 3.94 -19.87 -0.08 -2.62 16 12 C -0.11 -4.47 8.57 22.27 0.19 -4.27 16 13 C -0.13 -3.96 10.05 22.27 0.22 -3.74 16 14 C -0.14 -3.84 10.05 22.27 0.22 -3.62 16 15 C -0.12 -3.70 10.05 22.27 0.22 -3.48 16 16 C -0.15 -5.84 9.67 22.27 0.22 -5.62 16 17 N -0.49 -21.11 4.52 -841.61 -3.81 -24.92 16 18 C 0.03 1.14 5.63 86.65 0.49 1.62 16 19 C -0.08 -2.27 6.85 31.79 0.22 -2.05 16 20 C -0.17 -5.39 7.05 -9.95 -0.07 -5.46 16 21 H 0.12 3.28 8.14 -2.39 -0.02 3.27 16 22 C -0.14 -4.70 10.23 30.59 0.31 -4.39 16 23 C -0.02 -0.64 5.89 45.07 0.27 -0.37 16 24 H 0.08 3.60 5.93 -2.39 -0.01 3.58 16 25 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 26 H 0.11 4.50 7.87 -2.91 -0.02 4.48 16 27 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 28 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 29 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 30 H 0.11 4.00 8.00 -2.91 -0.02 3.98 16 31 H 0.08 2.66 7.42 -2.38 -0.02 2.64 16 32 H 0.03 0.98 8.02 -2.38 -0.02 0.96 16 33 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.10 3.25 8.14 -2.38 -0.02 3.23 16 36 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -66.66 290.45 2.16 -64.50 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 0.95 Total: 21.74 kcal Atomic # 6 Polarization: -52.28 SS G_CDS: 2.94 Total: -49.34 kcal Atomic # 7 Polarization: -79.51 SS G_CDS: -3.51 Total: -83.02 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.78 Total: 46.12 kcal Total: -66.66 2.16 -64.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706969225.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.163 kcal (2) G-P(sol) polarization free energy of solvation -66.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds