Wall clock time and date at job start Mon Mar 30 2020 05:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86805 * 119.99841 * 2 1 4 4 H 1.48507 * 109.47226 * 270.00210 * 3 2 1 5 5 H 1.48503 * 109.46844 * 30.00444 * 3 2 1 6 6 H 1.48501 * 109.47039 * 150.00089 * 3 2 1 7 7 C 1.39948 * 120.00545 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00293 * 197.85825 * 7 2 1 9 9 C 1.41399 * 119.99521 * 17.84769 * 7 2 1 10 10 C 1.40712 * 120.24544 * 24.39701 * 9 7 2 11 11 C 1.37620 * 119.74357 * 179.97438 * 10 9 7 12 12 C 1.38631 * 120.24787 * 359.97438 * 11 10 9 13 13 C 1.50708 * 119.74524 * 179.97438 * 12 11 10 14 14 N 1.46903 * 109.46757 * 90.00379 * 13 12 11 15 15 C 1.48528 * 110.99953 * 69.87272 * 14 13 12 16 16 C 1.54939 * 103.37844 * 159.56303 * 15 14 13 17 17 C 1.54736 * 102.85616 * 322.74918 * 16 15 14 18 18 H 1.08997 * 117.95775 * 242.28017 * 17 16 15 19 19 C 1.52944 * 118.35983 * 85.37868 * 17 16 15 20 20 C 1.47945 * 110.99526 * 187.24440 * 14 13 12 21 21 H 1.09004 * 117.37157 * 354.63965 * 20 14 13 22 22 C 1.38629 * 120.50303 * 0.27315 * 12 11 10 23 23 C 1.37620 * 120.24850 * 359.44956 * 22 12 11 24 24 H 0.97003 * 120.00236 * 359.97438 * 1 2 3 25 25 H 1.08005 * 120.12738 * 359.97438 * 10 9 7 26 26 H 1.08004 * 119.87348 * 180.02562 * 11 10 9 27 27 H 1.08995 * 109.47231 * 330.00022 * 13 12 11 28 28 H 1.09000 * 109.46591 * 210.00240 * 13 12 11 29 29 H 1.09003 * 110.66824 * 278.08041 * 15 14 13 30 30 H 1.09001 * 110.67134 * 41.04190 * 15 14 13 31 31 H 1.09002 * 110.71866 * 80.98022 * 16 15 14 32 32 H 1.08999 * 110.72104 * 204.25337 * 16 15 14 33 33 H 1.08992 * 117.45813 * 160.64217 * 19 17 16 34 34 H 1.09001 * 117.44976 * 15.86597 * 19 17 16 35 35 H 1.08005 * 119.87561 * 179.69852 * 22 12 11 36 36 H 1.08002 * 120.13131 * 180.26747 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4896 2.0466 -1.4001 5 1 1.4396 2.6527 0.7002 6 1 3.5397 1.4403 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0489 -1.2345 0.2862 9 6 1.3521 -2.4068 -0.3764 10 6 0.2209 -2.3617 -1.2121 11 6 -0.4092 -3.5311 -1.5719 12 6 0.0669 -4.7502 -1.1147 13 6 -0.6323 -6.0238 -1.5153 14 7 -0.0419 -6.5360 -2.7591 15 6 1.3347 -7.0427 -2.5256 16 6 1.5788 -7.9856 -3.7306 17 6 0.1953 -8.6476 -3.9356 18 1 0.1226 -9.7281 -3.8124 19 6 -0.8408 -7.9158 -4.7900 20 6 -0.8127 -7.6878 -3.2768 21 1 -1.6294 -8.0623 -2.6596 22 6 1.1774 -4.8062 -0.2868 23 6 1.8268 -3.6500 0.0812 24 1 -0.4850 0.8401 0.0004 25 1 -0.1514 -1.4130 -1.5697 26 1 -1.2774 -3.4989 -2.2136 27 1 -1.6920 -5.8227 -1.6720 28 1 -0.5162 -6.7658 -0.7254 29 1 2.0522 -6.2221 -2.5277 30 1 1.3873 -7.5955 -1.5877 31 1 1.8669 -7.4157 -4.6140 32 1 2.3348 -8.7326 -3.4888 33 1 -1.6645 -8.5040 -5.1944 34 1 -0.4853 -7.1059 -5.4269 35 1 1.5367 -5.7611 0.0674 36 1 2.6944 -3.6962 0.7228 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706977167.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:36 Heat of formation + Delta-G solvation = 50.902063 kcal Electronic energy + Delta-G solvation = -16796.954507 eV Core-core repulsion = 14246.219307 eV Total energy + Delta-G solvation = -2550.735200 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.59951 -37.47654 -34.30132 -32.90854 -30.65178 -29.43926 -29.15669 -26.17999 -23.60203 -22.69196 -20.97262 -20.43096 -20.03894 -19.68717 -17.25691 -16.22766 -15.32289 -15.04472 -14.16814 -14.07331 -13.70776 -13.50386 -13.01270 -12.77205 -12.53203 -12.09275 -11.90699 -11.79266 -11.43890 -11.13455 -11.06441 -10.93120 -10.81847 -10.45070 -10.29965 -10.22727 -9.80672 -9.54226 -9.32861 -9.10030 -7.90728 -7.40116 -7.26169 -6.73354 -4.31805 2.76646 3.08491 3.11541 3.12279 3.19823 3.66462 3.95165 4.25444 4.68459 4.81977 4.88174 5.17594 5.33049 5.38823 5.56252 5.71669 5.77084 5.81873 5.86172 5.94779 6.02978 6.14599 6.24763 6.33198 6.35512 6.39717 6.49470 6.99207 7.09488 7.22348 7.33978 7.41952 7.49921 7.65680 7.91257 8.09243 8.19056 8.33809 8.68376 8.93002 9.01722 10.21253 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.047446 B = 0.004789 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.004038 B = 5844.898027 C = 5976.607564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.112 3.888 10 C -0.167 4.167 11 C -0.079 4.079 12 C -0.207 4.207 13 C 0.114 3.886 14 N -0.486 5.486 15 C 0.046 3.954 16 C -0.095 4.095 17 C -0.187 4.187 18 H 0.106 0.894 19 C -0.141 4.141 20 C -0.010 4.010 21 H 0.104 0.896 22 C -0.084 4.084 23 C -0.228 4.228 24 H 0.280 0.720 25 H 0.117 0.883 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.025 0.975 29 H 0.087 0.913 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.531 -10.674 -5.303 11.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.187 4.187 11 C -0.098 4.098 12 C -0.208 4.208 13 C -0.012 4.012 14 N -0.209 5.209 15 C -0.081 4.081 16 C -0.133 4.133 17 C -0.206 4.206 18 H 0.124 0.876 19 C -0.179 4.179 20 C -0.119 4.119 21 H 0.122 0.878 22 C -0.102 4.102 23 C -0.247 4.247 24 H 0.091 0.909 25 H 0.135 0.865 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.043 0.957 29 H 0.106 0.894 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.100 0.900 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.742 -10.064 -5.611 11.547 hybrid contribution 0.240 0.106 0.719 0.765 sum -0.502 -9.958 -4.892 11.107 Atomic orbital electron populations 1.69830 1.07581 1.29138 1.35318 1.25899 0.94697 1.01254 0.92252 0.86336 0.80497 0.80689 0.79318 1.19269 1.20354 1.18659 1.19601 0.98122 0.91357 1.40304 0.90525 1.17619 0.91083 0.91945 0.88378 1.21309 0.99402 0.96776 1.01198 1.20490 0.98341 0.92500 0.98484 1.18818 1.01479 0.92674 1.07873 1.20862 0.97563 0.94485 0.88312 1.64396 1.01134 1.26785 1.28609 1.23413 0.91513 0.97153 0.96054 1.22138 0.94623 0.97704 0.98836 1.23619 0.92194 0.97315 1.07493 0.87618 1.23089 0.99704 1.01737 0.93386 1.23613 0.99651 0.93335 0.95312 0.87816 1.20336 0.95585 0.96144 0.98172 1.20922 1.03699 0.92959 1.07152 0.90921 0.86528 0.89532 0.91601 0.95686 0.89420 0.94171 0.90857 0.91079 0.88628 0.88535 0.90026 0.89208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.75 10.95 55.55 0.61 -20.14 16 2 C 0.08 1.95 5.14 -17.34 -0.09 1.86 16 3 Si 0.91 18.86 29.60 -169.99 -5.03 13.83 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.46 -12.49 9.05 -37.74 -0.34 -12.83 16 8 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 9 C 0.11 3.04 5.58 -106.82 -0.60 2.44 16 10 C -0.17 -4.43 8.70 -38.87 -0.34 -4.77 16 11 C -0.08 -1.90 9.67 -39.66 -0.38 -2.28 16 12 C -0.21 -4.56 5.12 -104.33 -0.53 -5.10 16 13 C 0.11 2.10 4.96 -4.97 -0.02 2.07 16 14 N -0.49 -8.25 5.21 -223.92 -1.17 -9.42 16 15 C 0.05 0.72 5.54 -1.90 -0.01 0.71 16 16 C -0.10 -1.22 6.88 -24.79 -0.17 -1.39 16 17 C -0.19 -2.26 7.04 -89.22 -0.63 -2.89 16 18 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 19 C -0.14 -1.70 10.24 -26.73 -0.27 -1.97 16 20 C -0.01 -0.14 6.50 -66.59 -0.43 -0.57 16 21 H 0.10 1.35 7.98 -51.93 -0.41 0.93 16 22 C -0.08 -1.88 8.70 -39.66 -0.35 -2.23 16 23 C -0.23 -5.66 9.80 -38.87 -0.38 -6.04 16 24 H 0.28 6.65 8.30 -40.82 -0.34 6.32 16 25 H 0.12 3.19 6.15 -52.48 -0.32 2.87 16 26 H 0.09 1.93 8.06 -52.48 -0.42 1.50 16 27 H 0.07 1.17 8.05 -51.93 -0.42 0.75 16 28 H 0.02 0.44 7.83 -51.93 -0.41 0.03 16 29 H 0.09 1.53 7.82 -51.93 -0.41 1.12 16 30 H 0.04 0.62 7.85 -51.93 -0.41 0.21 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.08 1.64 8.06 -52.48 -0.42 1.21 16 36 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 296.75 15.07 4.47 4.47 Total: -1.00 -27.50 296.75 -10.97 -38.47 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -5.31 Total: 5.78 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: -4.55 Total: -32.98 kcal Atomic # 7 Polarization: -29.00 SS G_CDS: -0.56 Total: -29.56 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.50 -10.97 -38.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706977167.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.375 kcal (2) G-P(sol) polarization free energy of solvation -27.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds