Wall clock time and date at job start Mon Mar 30 2020 05:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86805 * 119.99841 * 2 1 4 4 H 1.48507 * 109.47226 * 270.00210 * 3 2 1 5 5 H 1.48503 * 109.46844 * 30.00444 * 3 2 1 6 6 H 1.48501 * 109.47039 * 150.00089 * 3 2 1 7 7 C 1.39948 * 120.00545 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00293 * 197.85825 * 7 2 1 9 9 C 1.41399 * 119.99521 * 17.84769 * 7 2 1 10 10 C 1.40712 * 120.24544 * 24.39701 * 9 7 2 11 11 C 1.37620 * 119.74357 * 179.97438 * 10 9 7 12 12 C 1.38631 * 120.24787 * 359.97438 * 11 10 9 13 13 C 1.50708 * 119.74524 * 179.97438 * 12 11 10 14 14 N 1.46903 * 109.46757 * 90.00379 * 13 12 11 15 15 C 1.48528 * 110.99953 * 69.87272 * 14 13 12 16 16 C 1.54939 * 103.37844 * 159.56303 * 15 14 13 17 17 C 1.54736 * 102.85616 * 322.74918 * 16 15 14 18 18 H 1.08997 * 117.95775 * 242.28017 * 17 16 15 19 19 C 1.52944 * 118.35983 * 85.37868 * 17 16 15 20 20 C 1.47945 * 110.99526 * 187.24440 * 14 13 12 21 21 H 1.09004 * 117.37157 * 354.63965 * 20 14 13 22 22 C 1.38629 * 120.50303 * 0.27315 * 12 11 10 23 23 C 1.37620 * 120.24850 * 359.44956 * 22 12 11 24 24 H 0.97003 * 120.00236 * 359.97438 * 1 2 3 25 25 H 1.08005 * 120.12738 * 359.97438 * 10 9 7 26 26 H 1.08004 * 119.87348 * 180.02562 * 11 10 9 27 27 H 1.08995 * 109.47231 * 330.00022 * 13 12 11 28 28 H 1.09000 * 109.46591 * 210.00240 * 13 12 11 29 29 H 1.09003 * 110.66824 * 278.08041 * 15 14 13 30 30 H 1.09001 * 110.67134 * 41.04190 * 15 14 13 31 31 H 1.09002 * 110.71866 * 80.98022 * 16 15 14 32 32 H 1.08999 * 110.72104 * 204.25337 * 16 15 14 33 33 H 1.08992 * 117.45813 * 160.64217 * 19 17 16 34 34 H 1.09001 * 117.44976 * 15.86597 * 19 17 16 35 35 H 1.08005 * 119.87561 * 179.69852 * 22 12 11 36 36 H 1.08002 * 120.13131 * 180.26747 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4896 2.0466 -1.4001 5 1 1.4396 2.6527 0.7002 6 1 3.5397 1.4403 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0489 -1.2345 0.2862 9 6 1.3521 -2.4068 -0.3764 10 6 0.2209 -2.3617 -1.2121 11 6 -0.4092 -3.5311 -1.5719 12 6 0.0669 -4.7502 -1.1147 13 6 -0.6323 -6.0238 -1.5153 14 7 -0.0419 -6.5360 -2.7591 15 6 1.3347 -7.0427 -2.5256 16 6 1.5788 -7.9856 -3.7306 17 6 0.1953 -8.6476 -3.9356 18 1 0.1226 -9.7281 -3.8124 19 6 -0.8408 -7.9158 -4.7900 20 6 -0.8127 -7.6878 -3.2768 21 1 -1.6294 -8.0623 -2.6596 22 6 1.1774 -4.8062 -0.2868 23 6 1.8268 -3.6500 0.0812 24 1 -0.4850 0.8401 0.0004 25 1 -0.1514 -1.4130 -1.5697 26 1 -1.2774 -3.4989 -2.2136 27 1 -1.6920 -5.8227 -1.6720 28 1 -0.5162 -6.7658 -0.7254 29 1 2.0522 -6.2221 -2.5277 30 1 1.3873 -7.5955 -1.5877 31 1 1.8669 -7.4157 -4.6140 32 1 2.3348 -8.7326 -3.4888 33 1 -1.6645 -8.5040 -5.1944 34 1 -0.4853 -7.1059 -5.4269 35 1 1.5367 -5.7611 0.0674 36 1 2.6944 -3.6962 0.7228 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706977167.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:35 Heat of formation + Delta-G solvation = 36.662334 kcal Electronic energy + Delta-G solvation = -16797.571988 eV Core-core repulsion = 14246.219307 eV Total energy + Delta-G solvation = -2551.352681 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.76796 -39.28572 -36.00667 -34.45471 -32.05152 -31.11991 -30.91300 -27.90249 -25.14080 -23.93625 -22.83766 -21.82331 -21.25297 -21.06419 -19.21109 -17.42262 -17.10735 -16.38745 -15.81996 -15.68436 -15.39452 -14.77026 -14.44832 -14.29585 -13.88328 -13.76569 -13.43234 -13.33546 -12.88298 -12.79379 -12.65477 -12.55276 -12.06826 -12.02648 -11.81843 -11.46335 -11.25428 -11.20302 -11.01711 -10.79093 -9.34507 -9.27256 -9.05371 -8.63329 -6.32796 0.95015 1.15446 1.37477 1.50905 1.51349 2.20817 2.60205 2.73195 3.17913 3.76554 3.82289 3.83732 4.15308 4.23338 4.30048 4.35979 4.42472 4.49815 4.55863 4.63844 4.77865 4.84877 4.93193 4.99205 5.05852 5.08140 5.14776 5.18360 5.37258 5.40697 5.47292 5.71438 5.91356 6.05360 6.11275 6.24062 6.31035 6.39622 6.71620 6.94951 7.04984 8.33941 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.047446 B = 0.004789 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.004038 B = 5844.898027 C = 5976.607564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.035 3.965 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.258 1.258 7 C -0.504 4.504 8 H 0.074 0.926 9 C 0.080 3.920 10 C -0.192 4.192 11 C -0.087 4.087 12 C -0.195 4.195 13 C 0.121 3.879 14 N -0.507 5.507 15 C 0.042 3.958 16 C -0.092 4.092 17 C -0.172 4.172 18 H 0.132 0.868 19 C -0.134 4.134 20 C -0.032 4.032 21 H 0.116 0.884 22 C -0.081 4.081 23 C -0.243 4.243 24 H 0.288 0.712 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.123 0.877 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.637 -12.463 -5.935 13.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.179 4.179 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.182 1.182 7 C -0.533 4.533 8 H 0.092 0.908 9 C 0.077 3.923 10 C -0.211 4.211 11 C -0.106 4.106 12 C -0.197 4.197 13 C -0.006 4.006 14 N -0.230 5.230 15 C -0.085 4.085 16 C -0.130 4.130 17 C -0.190 4.190 18 H 0.149 0.851 19 C -0.172 4.172 20 C -0.141 4.141 21 H 0.134 0.866 22 C -0.099 4.099 23 C -0.263 4.263 24 H 0.098 0.902 25 H 0.116 0.884 26 H 0.118 0.882 27 H 0.090 0.910 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.141 0.859 34 H 0.101 0.899 35 H 0.128 0.872 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.852 -11.876 -6.250 13.447 hybrid contribution 0.225 0.508 0.875 1.037 sum -0.627 -11.367 -5.376 12.590 Atomic orbital electron populations 1.69883 1.09047 1.30495 1.35829 1.26759 0.95477 1.04514 0.91179 0.85207 0.79091 0.75907 0.79496 1.18754 1.19110 1.18182 1.19843 0.98329 0.92677 1.42472 0.90800 1.17959 0.91904 0.93099 0.89301 1.21265 1.00373 0.96996 1.02483 1.20710 0.98648 0.92592 0.98637 1.19253 1.00658 0.93809 1.05937 1.20742 0.97361 0.92844 0.89647 1.64267 1.02079 1.29080 1.27595 1.23407 0.90446 0.96902 0.97740 1.22133 0.95992 0.97653 0.97248 1.23732 0.90931 0.98296 1.06088 0.85064 1.23185 1.00527 1.01528 0.91958 1.23716 1.00669 0.93090 0.96621 0.86639 1.20619 0.95227 0.96561 0.97542 1.21141 1.04324 0.93246 1.07589 0.90176 0.88380 0.88246 0.91036 0.94389 0.92082 0.93654 0.91491 0.88756 0.85926 0.89936 0.87168 0.88657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.61 10.95 21.83 0.24 -44.37 16 2 C 0.04 1.84 5.14 85.26 0.44 2.28 16 3 Si 0.98 39.28 29.60 68.60 2.03 41.31 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 6 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 7 C -0.50 -28.18 9.05 23.46 0.21 -27.97 16 8 H 0.07 3.99 7.91 -2.91 -0.02 3.97 16 9 C 0.08 4.48 5.58 -21.29 -0.12 4.36 16 10 C -0.19 -10.56 8.70 22.73 0.20 -10.36 16 11 C -0.09 -4.23 9.67 22.22 0.21 -4.02 16 12 C -0.20 -8.51 5.12 -19.67 -0.10 -8.61 16 13 C 0.12 4.23 4.96 85.56 0.42 4.66 16 14 N -0.51 -16.31 5.21 -862.36 -4.49 -20.80 16 15 C 0.04 1.25 5.54 86.65 0.48 1.73 16 16 C -0.09 -2.12 6.88 31.85 0.22 -1.90 16 17 C -0.17 -3.51 7.04 -9.88 -0.07 -3.58 16 18 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 19 C -0.13 -2.81 10.24 30.60 0.31 -2.50 16 20 C -0.03 -0.81 6.50 45.07 0.29 -0.52 16 21 H 0.12 2.61 7.98 -2.38 -0.02 2.59 16 22 C -0.08 -3.61 8.70 22.22 0.19 -3.41 16 23 C -0.24 -12.36 9.80 22.73 0.22 -12.14 16 24 H 0.29 14.00 8.30 -92.71 -0.77 13.23 16 25 H 0.10 5.66 6.15 -2.91 -0.02 5.65 16 26 H 0.10 4.46 8.06 -2.91 -0.02 4.44 16 27 H 0.07 2.40 8.05 -2.39 -0.02 2.39 16 28 H 0.04 1.23 7.83 -2.39 -0.02 1.21 16 29 H 0.06 2.11 7.82 -2.39 -0.02 2.09 16 30 H 0.05 1.28 7.85 -2.39 -0.02 1.26 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.11 4.23 8.06 -2.91 -0.02 4.20 16 36 H 0.10 4.59 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -60.95 296.75 1.75 -59.20 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 1.05 Total: 26.64 kcal Atomic # 6 Polarization: -64.90 SS G_CDS: 2.92 Total: -61.98 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: -4.25 Total: -65.17 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.31 kcal Total: -60.95 1.75 -59.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706977167.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.867 kcal (2) G-P(sol) polarization free energy of solvation -60.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds