Wall clock time and date at job start Mon Mar 30 2020 05:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86803 * 120.00052 * 2 1 4 4 H 1.48497 * 109.47547 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46828 * 300.00012 * 3 2 1 6 6 H 1.48502 * 109.46817 * 59.99987 * 3 2 1 7 7 C 1.39945 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99973 * 162.28211 * 7 2 1 9 9 C 1.41396 * 119.99955 * 342.55190 * 7 2 1 10 10 C 1.40718 * 120.24347 * 155.03187 * 9 7 2 11 11 C 1.37611 * 119.74343 * 179.74262 * 10 9 7 12 12 C 1.38636 * 120.25279 * 0.53117 * 11 10 9 13 13 C 1.50692 * 119.75360 * 179.69837 * 12 11 10 14 14 N 1.46905 * 109.46934 * 270.01935 * 13 12 11 15 15 C 1.48530 * 110.99743 * 69.87388 * 14 13 12 16 16 C 1.54941 * 103.22922 * 200.34708 * 15 14 13 17 17 C 1.54558 * 102.93904 * 37.46701 * 16 15 14 18 18 H 1.09001 * 117.57717 * 118.88258 * 17 16 15 19 19 C 1.52935 * 118.20030 * 274.42321 * 17 16 15 20 20 C 1.47941 * 111.00144 * 312.50175 * 14 13 12 21 21 H 1.08997 * 117.37089 * 5.35755 * 20 14 13 22 22 C 1.38637 * 120.49719 * 359.71753 * 12 11 10 23 23 C 1.37624 * 120.24713 * 0.02562 * 22 12 11 24 24 H 0.96997 * 120.00216 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.12485 * 359.96923 * 10 9 7 26 26 H 1.08003 * 119.87558 * 180.27307 * 11 10 9 27 27 H 1.08993 * 109.47129 * 30.01745 * 13 12 11 28 28 H 1.09003 * 109.47143 * 150.02411 * 13 12 11 29 29 H 1.08998 * 110.67229 * 318.78669 * 15 14 13 30 30 H 1.09010 * 110.66591 * 81.75153 * 15 14 13 31 31 H 1.09002 * 110.71531 * 155.82942 * 16 15 14 32 32 H 1.08998 * 110.72355 * 279.10238 * 16 15 14 33 33 H 1.09001 * 117.45521 * 199.34976 * 19 17 16 34 34 H 1.08996 * 117.45346 * 344.15912 * 19 17 16 35 35 H 1.07997 * 119.87614 * 179.97438 * 22 12 11 36 36 H 1.08005 * 120.12321 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8834 2.3964 -1.2125 6 1 1.8834 2.3964 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0495 -1.2340 -0.2852 9 6 1.3498 -2.4085 0.3661 10 6 1.8190 -3.6486 -0.1052 11 6 1.1738 -4.8071 0.2624 12 6 0.0589 -4.7549 1.0848 13 6 -0.6431 -6.0300 1.4747 14 7 -1.6872 -6.3358 0.4876 15 6 -1.0900 -6.7398 -0.8110 16 6 -2.2418 -6.5030 -1.8199 17 6 -2.9094 -5.2150 -1.2870 18 1 -2.9202 -4.3440 -1.9423 19 6 -3.9735 -5.3503 -0.1969 20 6 -2.5097 -5.1406 0.1983 21 1 -2.2038 -4.1993 0.6549 22 6 -0.4153 -3.5384 1.5507 23 6 0.2173 -2.3675 1.2002 24 1 -0.4850 0.8400 0.0004 25 1 2.6845 -3.6912 -0.7499 26 1 1.5348 -5.7604 -0.0945 27 1 0.0779 -6.8468 1.5058 28 1 -1.0973 -5.9086 2.4582 29 1 -0.2323 -6.1118 -1.0520 30 1 -0.8021 -7.7910 -0.7917 31 1 -1.8484 -6.3464 -2.8243 32 1 -2.9446 -7.3361 -1.8054 33 1 -4.6571 -4.5132 -0.0552 34 1 -4.4013 -6.3392 -0.0323 35 1 -1.2849 -3.5093 2.1905 36 1 -0.1541 -1.4208 1.5641 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706977169.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:38 Heat of formation + Delta-G solvation = 53.729406 kcal Electronic energy + Delta-G solvation = -17346.908433 eV Core-core repulsion = 14796.295836 eV Total energy + Delta-G solvation = -2550.612597 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.64558 -37.39116 -34.29875 -32.85903 -30.74631 -29.29937 -29.12135 -26.08004 -23.62727 -22.80233 -21.13398 -20.44129 -19.82362 -19.22182 -17.35358 -16.10637 -15.37846 -14.94483 -14.25662 -13.93401 -13.75569 -13.33248 -12.99450 -12.69119 -12.42898 -12.07504 -11.95703 -11.60219 -11.30542 -11.18700 -10.93215 -10.84116 -10.73847 -10.56006 -10.32720 -9.99731 -9.73150 -9.53180 -9.33879 -9.16848 -7.76690 -7.48076 -7.34607 -6.80895 -4.39960 2.68956 2.98841 3.04350 3.09209 3.13729 3.89267 3.95002 4.44221 4.60674 5.10704 5.12559 5.51203 5.61819 5.65944 5.71003 5.80393 5.84068 6.02671 6.04995 6.12709 6.16335 6.27332 6.29416 6.39370 6.45907 6.53737 6.60355 6.88268 7.01838 7.17343 7.28462 7.39014 7.55569 7.59341 7.80560 8.00143 8.06239 8.24626 8.58882 8.84688 8.92161 10.13317 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.032319 B = 0.006396 C = 0.005993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.162593 B = 4376.769401 C = 4671.325755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.462 4.462 8 H 0.077 0.923 9 C 0.112 3.888 10 C -0.227 4.227 11 C -0.081 4.081 12 C -0.244 4.244 13 C 0.105 3.895 14 N -0.491 5.491 15 C 0.030 3.970 16 C -0.091 4.091 17 C -0.186 4.186 18 H 0.107 0.893 19 C -0.150 4.150 20 C -0.001 4.001 21 H 0.130 0.870 22 C -0.093 4.093 23 C -0.164 4.164 24 H 0.280 0.720 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.841 -6.393 -0.694 7.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.197 1.197 7 C -0.492 4.492 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.246 4.246 11 C -0.100 4.100 12 C -0.247 4.247 13 C -0.022 4.022 14 N -0.213 5.213 15 C -0.098 4.098 16 C -0.129 4.129 17 C -0.206 4.206 18 H 0.125 0.875 19 C -0.188 4.188 20 C -0.109 4.109 21 H 0.148 0.852 22 C -0.112 4.112 23 C -0.183 4.183 24 H 0.091 0.909 25 H 0.108 0.892 26 H 0.103 0.897 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.337 -6.688 -0.470 7.985 hybrid contribution 0.869 1.563 -0.445 1.843 sum -3.468 -5.126 -0.915 6.256 Atomic orbital electron populations 1.69825 1.07585 1.29129 1.35214 1.25909 0.94722 1.01331 0.92203 0.86287 0.81037 0.80979 0.78590 1.18390 1.19980 1.19663 1.19632 0.98073 0.91253 1.40231 0.90464 1.17623 0.91069 0.92005 0.88353 1.20962 1.03811 0.93018 1.06855 1.20361 0.95471 0.96222 0.97900 1.19604 1.01408 0.94393 1.09271 1.20917 0.91909 0.94528 0.94833 1.64628 1.19310 1.29196 1.08163 1.23551 0.97426 1.00241 0.88545 1.22023 0.96759 0.95894 0.98203 1.23468 1.04718 0.99749 0.92626 0.87480 1.23085 0.91774 1.02401 1.01492 1.23891 0.94298 0.95505 0.97251 0.85238 1.20522 0.98193 0.92823 0.99658 1.21319 0.99225 0.96707 1.01040 0.90922 0.89180 0.89725 0.91793 0.91448 0.91867 0.90978 0.91239 0.91524 0.88719 0.89245 0.89456 0.86493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.26 10.95 55.55 0.61 -19.65 16 2 C 0.08 1.90 5.15 -17.34 -0.09 1.81 16 3 Si 0.91 18.53 29.59 -169.99 -5.03 13.50 16 4 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.46 -12.20 9.05 -37.74 -0.34 -12.55 16 8 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 9 C 0.11 2.96 5.57 -106.83 -0.60 2.36 16 10 C -0.23 -5.53 9.80 -38.87 -0.38 -5.91 16 11 C -0.08 -1.77 7.99 -39.66 -0.32 -2.09 16 12 C -0.24 -5.17 4.22 -104.33 -0.44 -5.61 16 13 C 0.11 1.90 5.71 -4.98 -0.03 1.87 16 14 N -0.49 -8.56 5.49 -223.93 -1.23 -9.79 16 15 C 0.03 0.48 6.39 -1.90 -0.01 0.47 16 16 C -0.09 -1.35 6.85 -24.89 -0.17 -1.52 16 17 C -0.19 -3.05 7.05 -89.32 -0.63 -3.68 16 18 H 0.11 1.79 8.14 -51.93 -0.42 1.37 16 19 C -0.15 -2.25 10.23 -26.73 -0.27 -2.52 16 20 C 0.00 -0.01 5.87 -66.59 -0.39 -0.40 16 21 H 0.13 2.62 4.54 -51.93 -0.24 2.39 16 22 C -0.09 -2.11 7.49 -39.66 -0.30 -2.41 16 23 C -0.16 -4.17 8.70 -38.87 -0.34 -4.51 16 24 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 25 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 26 H 0.08 1.66 7.53 -52.48 -0.40 1.27 16 27 H 0.06 1.08 8.02 -51.93 -0.42 0.66 16 28 H 0.07 1.18 8.08 -51.93 -0.42 0.76 16 29 H 0.06 1.15 5.27 -51.93 -0.27 0.88 16 30 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.09 1.83 7.52 -52.49 -0.39 1.43 16 36 H 0.12 3.10 6.16 -52.48 -0.32 2.78 16 LS Contribution 287.67 15.07 4.34 4.34 Total: -1.00 -26.48 287.67 -10.59 -37.07 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -4.97 Total: 9.22 kcal Atomic # 6 Polarization: -30.38 SS G_CDS: -4.30 Total: -34.69 kcal Atomic # 7 Polarization: -28.81 SS G_CDS: -0.62 Total: -29.43 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -26.48 -10.59 -37.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706977169.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.795 kcal (2) G-P(sol) polarization free energy of solvation -26.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds