Wall clock time and date at job start Mon Mar 30 2020 05:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86803 * 120.00052 * 2 1 4 4 H 1.48497 * 109.47547 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46828 * 300.00012 * 3 2 1 6 6 H 1.48502 * 109.46817 * 59.99987 * 3 2 1 7 7 C 1.39945 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99973 * 162.28211 * 7 2 1 9 9 C 1.41396 * 119.99955 * 342.55190 * 7 2 1 10 10 C 1.40718 * 120.24347 * 155.03187 * 9 7 2 11 11 C 1.37611 * 119.74343 * 179.74262 * 10 9 7 12 12 C 1.38636 * 120.25279 * 0.53117 * 11 10 9 13 13 C 1.50692 * 119.75360 * 179.69837 * 12 11 10 14 14 N 1.46905 * 109.46934 * 270.01935 * 13 12 11 15 15 C 1.48530 * 110.99743 * 69.87388 * 14 13 12 16 16 C 1.54941 * 103.22922 * 200.34708 * 15 14 13 17 17 C 1.54558 * 102.93904 * 37.46701 * 16 15 14 18 18 H 1.09001 * 117.57717 * 118.88258 * 17 16 15 19 19 C 1.52935 * 118.20030 * 274.42321 * 17 16 15 20 20 C 1.47941 * 111.00144 * 312.50175 * 14 13 12 21 21 H 1.08997 * 117.37089 * 5.35755 * 20 14 13 22 22 C 1.38637 * 120.49719 * 359.71753 * 12 11 10 23 23 C 1.37624 * 120.24713 * 0.02562 * 22 12 11 24 24 H 0.96997 * 120.00216 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.12485 * 359.96923 * 10 9 7 26 26 H 1.08003 * 119.87558 * 180.27307 * 11 10 9 27 27 H 1.08993 * 109.47129 * 30.01745 * 13 12 11 28 28 H 1.09003 * 109.47143 * 150.02411 * 13 12 11 29 29 H 1.08998 * 110.67229 * 318.78669 * 15 14 13 30 30 H 1.09010 * 110.66591 * 81.75153 * 15 14 13 31 31 H 1.09002 * 110.71531 * 155.82942 * 16 15 14 32 32 H 1.08998 * 110.72355 * 279.10238 * 16 15 14 33 33 H 1.09001 * 117.45521 * 199.34976 * 19 17 16 34 34 H 1.08996 * 117.45346 * 344.15912 * 19 17 16 35 35 H 1.07997 * 119.87614 * 179.97438 * 22 12 11 36 36 H 1.08005 * 120.12321 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8834 2.3964 -1.2125 6 1 1.8834 2.3964 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0495 -1.2340 -0.2852 9 6 1.3498 -2.4085 0.3661 10 6 1.8190 -3.6486 -0.1052 11 6 1.1738 -4.8071 0.2624 12 6 0.0589 -4.7549 1.0848 13 6 -0.6431 -6.0300 1.4747 14 7 -1.6872 -6.3358 0.4876 15 6 -1.0900 -6.7398 -0.8110 16 6 -2.2418 -6.5030 -1.8199 17 6 -2.9094 -5.2150 -1.2870 18 1 -2.9202 -4.3440 -1.9423 19 6 -3.9735 -5.3503 -0.1969 20 6 -2.5097 -5.1406 0.1983 21 1 -2.2038 -4.1993 0.6549 22 6 -0.4153 -3.5384 1.5507 23 6 0.2173 -2.3675 1.2002 24 1 -0.4850 0.8400 0.0004 25 1 2.6845 -3.6912 -0.7499 26 1 1.5348 -5.7604 -0.0945 27 1 0.0779 -6.8468 1.5058 28 1 -1.0973 -5.9086 2.4582 29 1 -0.2323 -6.1118 -1.0520 30 1 -0.8021 -7.7910 -0.7917 31 1 -1.8484 -6.3464 -2.8243 32 1 -2.9446 -7.3361 -1.8054 33 1 -4.6571 -4.5132 -0.0552 34 1 -4.4013 -6.3392 -0.0323 35 1 -1.2849 -3.5093 2.1905 36 1 -0.1541 -1.4208 1.5641 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706977169.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:38 Heat of formation + Delta-G solvation = 40.038983 kcal Electronic energy + Delta-G solvation = -17347.502094 eV Core-core repulsion = 14796.295836 eV Total energy + Delta-G solvation = -2551.206258 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.05118 -39.12976 -36.02007 -34.45605 -32.26013 -31.12710 -30.69875 -27.78108 -25.25541 -24.13969 -22.89130 -22.09767 -21.17881 -20.70324 -19.25423 -17.46742 -17.19845 -16.44620 -15.81069 -15.64483 -15.43518 -14.69715 -14.53954 -14.28290 -13.97735 -13.66709 -13.42772 -13.25684 -12.96564 -12.84908 -12.47464 -12.38128 -12.25075 -11.98667 -11.83577 -11.58674 -11.32286 -11.18493 -11.03162 -10.72491 -9.35584 -9.27785 -9.11278 -8.66644 -6.36533 0.90651 1.09801 1.35257 1.46572 1.50451 2.17948 2.61922 2.71060 3.20572 3.69035 3.83965 3.87603 4.18626 4.29086 4.33612 4.42144 4.45460 4.56778 4.60102 4.63206 4.86264 4.87790 4.94326 5.01696 5.03455 5.10995 5.12176 5.24420 5.31935 5.36286 5.43968 5.66283 5.92078 5.94254 6.07281 6.20218 6.24762 6.36079 6.67251 6.91431 7.00476 8.29924 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.032319 B = 0.006396 C = 0.005993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.162593 B = 4376.769401 C = 4671.325755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.036 3.964 3 Si 0.981 3.019 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.263 1.263 7 C -0.502 4.502 8 H 0.072 0.928 9 C 0.080 3.920 10 C -0.245 4.245 11 C -0.079 4.079 12 C -0.228 4.228 13 C 0.108 3.892 14 N -0.482 5.482 15 C 0.025 3.975 16 C -0.085 4.085 17 C -0.194 4.194 18 H 0.095 0.905 19 C -0.123 4.123 20 C -0.031 4.031 21 H 0.101 0.899 22 C -0.091 4.091 23 C -0.188 4.188 24 H 0.287 0.713 25 H 0.092 0.908 26 H 0.113 0.887 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.040 0.960 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.549 -7.864 -0.830 9.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.188 1.188 7 C -0.532 4.532 8 H 0.090 0.910 9 C 0.078 3.922 10 C -0.264 4.264 11 C -0.097 4.097 12 C -0.230 4.230 13 C -0.020 4.020 14 N -0.203 5.203 15 C -0.102 4.102 16 C -0.123 4.123 17 C -0.214 4.214 18 H 0.113 0.887 19 C -0.161 4.161 20 C -0.140 4.140 21 H 0.118 0.882 22 C -0.110 4.110 23 C -0.207 4.207 24 H 0.098 0.902 25 H 0.111 0.889 26 H 0.131 0.869 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.059 0.941 30 H 0.115 0.885 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.053 -8.177 -0.608 9.632 hybrid contribution 1.013 1.887 -0.404 2.179 sum -4.041 -6.291 -1.012 7.545 Atomic orbital electron populations 1.69877 1.08961 1.30413 1.35814 1.26739 0.95495 1.04466 0.91216 0.85183 0.79411 0.76263 0.79002 1.18257 1.19001 1.18801 1.19850 0.98188 0.92623 1.42505 0.90956 1.17955 0.91951 0.93039 0.89278 1.21157 1.04444 0.93420 1.07422 1.20656 0.95189 0.96572 0.97313 1.19998 1.00467 0.95345 1.07220 1.20973 0.92343 0.93158 0.95488 1.64728 1.18660 1.28398 1.08563 1.23662 0.97074 1.01127 0.88350 1.22043 0.96465 0.95583 0.98179 1.23607 1.05494 1.00357 0.91895 0.88658 1.23144 0.90337 1.03703 0.98893 1.23856 0.96702 0.94817 0.98590 0.88151 1.20716 0.98159 0.92673 0.99448 1.21255 1.00127 0.97007 1.02337 0.90207 0.88932 0.86911 0.89871 0.90713 0.94148 0.88536 0.90344 0.89503 0.87577 0.87644 0.88038 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.66 10.95 21.83 0.24 -43.42 16 2 C 0.04 1.82 5.15 85.26 0.44 2.26 16 3 Si 0.98 38.75 29.59 68.60 2.03 40.78 16 4 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 5 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 6 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 7 C -0.50 -27.66 9.05 23.46 0.21 -27.44 16 8 H 0.07 3.88 7.91 -2.91 -0.02 3.85 16 9 C 0.08 4.40 5.57 -21.29 -0.12 4.28 16 10 C -0.24 -12.19 9.80 22.73 0.22 -11.97 16 11 C -0.08 -3.40 7.99 22.22 0.18 -3.22 16 12 C -0.23 -9.44 4.22 -19.68 -0.08 -9.53 16 13 C 0.11 3.63 5.71 85.55 0.49 4.12 16 14 N -0.48 -15.49 5.49 -862.39 -4.73 -20.23 16 15 C 0.03 0.74 6.39 86.65 0.55 1.29 16 16 C -0.09 -2.27 6.85 31.79 0.22 -2.05 16 17 C -0.19 -6.02 7.05 -9.95 -0.07 -6.09 16 18 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 19 C -0.12 -3.39 10.23 30.59 0.31 -3.07 16 20 C -0.03 -1.05 5.87 45.07 0.26 -0.79 16 21 H 0.10 4.06 4.54 -2.39 -0.01 4.05 16 22 C -0.09 -4.19 7.49 22.22 0.17 -4.02 16 23 C -0.19 -9.97 8.70 22.73 0.20 -9.78 16 24 H 0.29 13.71 8.30 -92.71 -0.77 12.95 16 25 H 0.09 4.42 8.06 -2.91 -0.02 4.39 16 26 H 0.11 4.19 7.53 -2.91 -0.02 4.17 16 27 H 0.08 2.51 8.02 -2.39 -0.02 2.49 16 28 H 0.07 2.43 8.08 -2.39 -0.02 2.41 16 29 H 0.04 1.39 5.27 -2.39 -0.01 1.37 16 30 H 0.10 2.40 8.14 -2.38 -0.02 2.38 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.10 4.28 7.52 -2.91 -0.02 4.26 16 36 H 0.10 5.48 6.16 -2.91 -0.02 5.46 16 Total: -1.00 -58.35 287.67 1.58 -56.77 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: 1.07 Total: 32.10 kcal Atomic # 6 Polarization: -68.99 SS G_CDS: 2.98 Total: -66.00 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -4.49 Total: -63.65 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Total: -58.35 1.58 -56.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706977169.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.810 kcal (2) G-P(sol) polarization free energy of solvation -58.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds