Wall clock time and date at job start Mon Mar 30 2020 05:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86798 * 119.99930 * 2 1 4 4 H 1.48496 * 109.47018 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47086 * 300.00253 * 3 2 1 6 6 H 1.48503 * 109.46957 * 60.00444 * 3 2 1 7 7 C 1.39865 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00103 * 197.96031 * 7 2 1 9 9 C 1.41139 * 120.00267 * 17.95680 * 7 2 1 10 10 C 1.40879 * 120.15908 * 204.60085 * 9 7 2 11 11 C 1.36345 * 119.83965 * 180.02562 * 10 9 7 12 12 C 1.39570 * 120.15570 * 359.97438 * 11 10 9 13 13 N 1.38858 * 119.83656 * 179.97438 * 12 11 10 14 14 C 1.46504 * 119.99730 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47060 * 180.02562 * 14 13 12 16 16 H 1.09005 * 115.55096 * 330.58702 * 15 14 13 17 17 C 1.53000 * 117.49620 * 116.25407 * 15 14 13 18 18 C 1.52991 * 117.49654 * 184.91420 * 15 14 13 19 19 C 1.52993 * 138.58568 * 121.62237 * 18 15 14 20 20 C 1.52991 * 138.59320 * 23.40949 * 18 15 14 21 21 C 1.39562 * 120.31729 * 0.25368 * 12 11 10 22 22 C 1.36341 * 120.16178 * 359.48715 * 21 12 11 23 23 H 0.96989 * 120.00284 * 359.97438 * 1 2 3 24 24 H 1.08005 * 120.08139 * 0.02562 * 10 9 7 25 25 H 1.07997 * 119.91829 * 179.97438 * 11 10 9 26 26 H 0.97001 * 120.00357 * 0.02562 * 13 12 11 27 27 H 1.08999 * 109.47370 * 300.00651 * 14 13 12 28 28 H 1.08999 * 109.46945 * 60.00845 * 14 13 12 29 29 H 1.08992 * 117.50022 * 214.97561 * 17 15 14 30 30 H 1.08995 * 117.50227 * 0.02562 * 17 15 14 31 31 H 1.09002 * 117.50074 * 336.58906 * 19 18 15 32 32 H 1.09001 * 117.50292 * 121.61460 * 19 18 15 33 33 H 1.09001 * 117.49948 * 238.38265 * 20 18 15 34 34 H 1.09008 * 117.49611 * 23.39748 * 20 18 15 35 35 H 1.07996 * 119.91733 * 179.71915 * 21 12 11 36 36 H 1.08007 * 120.08248 * 180.23513 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7030 1.3464 -0.0006 5 1 1.8842 2.3964 -1.2124 6 1 1.8843 2.3964 1.2126 7 6 2.0084 -1.2113 -0.0005 8 1 3.0489 -1.2342 0.2879 9 6 1.3543 -2.4037 -0.3779 10 6 1.8267 -3.6473 0.0857 11 6 1.1902 -4.7952 -0.2833 12 6 0.0728 -4.7401 -1.1179 13 7 -0.5700 -5.9133 -1.4900 14 6 -1.7435 -5.8595 -2.3654 15 6 -2.2565 -7.2786 -2.6184 16 1 -1.5009 -8.0637 -2.5902 17 6 -3.6556 -7.6259 -2.1056 18 6 -3.4127 -7.4461 -3.6062 19 6 -3.7075 -8.1852 -4.9129 20 6 -4.0310 -6.6952 -4.7871 21 6 -0.3979 -3.5120 -1.5848 22 6 0.2255 -2.3557 -1.2196 23 1 -0.4850 0.8399 0.0004 24 1 2.6910 -3.6913 0.7319 25 1 1.5515 -5.7492 0.0710 26 1 -0.2426 -6.7684 -1.1698 27 1 -2.5264 -5.2702 -1.8879 28 1 -1.4685 -5.3978 -3.3137 29 1 -3.8205 -8.6395 -1.7404 30 1 -4.2107 -6.8434 -1.5884 31 1 -2.8578 -8.4648 -5.5357 32 1 -4.5446 -8.8833 -4.9186 33 1 -5.0810 -6.4128 -4.7098 34 1 -3.3940 -5.9945 -5.3270 35 1 -1.2603 -3.4772 -2.2339 36 1 -0.1421 -1.4058 -1.5787 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707793422.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:04 Heat of formation + Delta-G solvation = 76.518362 kcal Electronic energy + Delta-G solvation = -16208.584896 eV Core-core repulsion = 13658.960502 eV Total energy + Delta-G solvation = -2549.624394 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.73664 -37.70420 -35.02857 -33.29580 -32.09841 -29.42769 -28.82021 -26.10433 -23.80187 -22.54719 -21.64945 -20.70729 -19.84644 -18.97845 -17.17607 -16.09249 -15.51189 -15.13629 -14.91580 -14.49671 -14.13626 -13.80161 -13.40218 -12.61588 -12.52839 -12.00779 -11.79996 -11.68189 -11.62446 -11.23391 -11.08951 -11.02379 -10.81665 -10.46808 -10.05822 -10.01645 -9.89670 -9.64296 -9.25453 -9.17649 -8.48074 -7.46132 -6.61426 -6.35260 -4.00272 2.92879 3.13081 3.17296 3.22785 3.37556 3.52262 3.58498 4.07814 4.10763 4.49751 4.76818 4.78231 4.82603 5.34704 5.42463 5.46391 5.50810 5.58663 5.69127 5.75190 5.84754 5.91636 5.99847 6.11252 6.28021 6.31355 6.36483 6.97088 6.97378 7.23382 7.38934 7.58853 7.72391 7.87811 8.18558 8.32621 8.52837 8.74539 8.83772 9.09147 9.18558 10.40285 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.040641 B = 0.004201 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.789520 B = 6662.833057 C = 7106.778936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.074 3.926 3 Si 0.902 3.098 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.467 4.467 8 H 0.073 0.927 9 C 0.074 3.926 10 C -0.186 4.186 11 C -0.159 4.159 12 C 0.092 3.908 13 N -0.760 5.760 14 C 0.170 3.830 15 C -0.105 4.105 16 H 0.106 0.894 17 C -0.125 4.125 18 C -0.227 4.227 19 C -0.132 4.132 20 C -0.130 4.130 21 C -0.164 4.164 22 C -0.124 4.124 23 H 0.275 0.725 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.384 0.616 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.648 -10.873 -6.388 14.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.498 4.498 8 H 0.091 0.909 9 C 0.071 3.929 10 C -0.207 4.207 11 C -0.182 4.182 12 C -0.005 4.005 13 N -0.396 5.396 14 C 0.045 3.955 15 C -0.124 4.124 16 H 0.124 0.876 17 C -0.161 4.161 18 C -0.228 4.228 19 C -0.169 4.169 20 C -0.167 4.167 21 C -0.186 4.186 22 C -0.144 4.144 23 H 0.086 0.914 24 H 0.109 0.891 25 H 0.104 0.896 26 H 0.216 0.784 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.978 -10.598 -6.483 14.249 hybrid contribution 0.380 0.446 0.184 0.614 sum -6.597 -10.152 -6.298 13.648 Atomic orbital electron populations 1.69866 1.07365 1.28470 1.37855 1.25793 0.94641 1.00874 0.92746 0.86372 0.80999 0.81629 0.78292 1.18640 1.19986 1.20297 1.19398 0.97932 0.91383 1.41112 0.90922 1.17498 0.92439 0.92000 0.90996 1.20544 1.02683 0.92612 1.04824 1.19808 0.97912 0.97071 1.03372 1.17354 0.95690 0.85645 1.01775 1.43839 1.32669 1.05864 1.57273 1.20503 0.88440 0.92676 0.93899 1.22273 0.91160 0.98675 1.00259 0.87564 1.22857 0.98753 1.02365 0.92161 1.21481 1.05058 1.08024 0.88224 1.22644 1.02572 0.95049 0.96653 1.22631 1.00929 0.94638 0.98456 1.20095 1.01674 0.91955 1.04907 1.20936 0.98189 0.96411 0.98878 0.91414 0.89054 0.89594 0.78375 0.93207 0.93271 0.88781 0.88358 0.88735 0.88804 0.88657 0.88451 0.89477 0.86394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.75 10.96 55.54 0.61 -21.14 16 2 C 0.07 1.95 5.13 -17.34 -0.09 1.86 16 3 Si 0.90 19.44 29.60 -169.99 -5.03 14.41 16 4 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.47 -12.88 9.03 -37.87 -0.34 -13.23 16 8 H 0.07 1.94 7.91 -52.49 -0.41 1.52 16 9 C 0.07 2.03 5.57 -106.79 -0.60 1.43 16 10 C -0.19 -4.71 9.74 -39.26 -0.38 -5.09 16 11 C -0.16 -3.66 9.82 -39.77 -0.39 -4.05 16 12 C 0.09 2.07 6.67 -83.69 -0.56 1.51 16 13 N -0.76 -13.68 5.70 -58.50 -0.33 -14.02 16 14 C 0.17 2.67 5.17 -4.04 -0.02 2.65 16 15 C -0.11 -1.32 5.84 -90.62 -0.53 -1.85 16 16 H 0.11 1.26 8.04 -51.93 -0.42 0.84 16 17 C -0.12 -1.39 10.18 -26.69 -0.27 -1.66 16 18 C -0.23 -2.59 5.40 -154.48 -0.83 -3.42 16 19 C -0.13 -1.25 10.53 -26.74 -0.28 -1.53 16 20 C -0.13 -1.32 10.53 -26.74 -0.28 -1.60 16 21 C -0.16 -3.96 9.23 -39.77 -0.37 -4.33 16 22 C -0.12 -3.33 8.64 -39.26 -0.34 -3.66 16 23 H 0.28 6.75 8.30 -40.82 -0.34 6.42 16 24 H 0.09 2.17 8.06 -52.48 -0.42 1.75 16 25 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 26 H 0.38 6.11 8.40 -40.82 -0.34 5.77 16 27 H 0.05 0.83 7.67 -51.93 -0.40 0.44 16 28 H 0.05 0.81 7.91 -51.93 -0.41 0.40 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.10 1.12 8.03 -51.93 -0.42 0.70 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.10 0.99 8.14 -51.92 -0.42 0.57 16 35 H 0.09 1.93 6.68 -52.49 -0.35 1.58 16 36 H 0.12 3.27 6.16 -52.48 -0.32 2.94 16 LS Contribution 304.99 15.07 4.60 4.60 Total: -1.00 -28.68 304.99 -10.61 -39.29 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -5.17 Total: 9.84 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: -5.28 Total: -32.98 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.28 Total: -35.16 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.41 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.68 -10.61 -39.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707793422.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.811 kcal (2) G-P(sol) polarization free energy of solvation -28.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds