Wall clock time and date at job start Mon Mar 30 2020 05:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86796 * 120.00332 * 2 1 4 4 H 1.48499 * 109.47050 * 274.65131 * 3 2 1 5 5 H 1.48498 * 109.47311 * 34.65002 * 3 2 1 6 6 H 1.48494 * 109.47278 * 154.65361 * 3 2 1 7 7 C 1.39869 * 119.99592 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99622 * 162.13187 * 7 2 1 9 9 C 1.41137 * 119.99921 * 342.13422 * 7 2 1 10 10 C 1.40888 * 120.15418 * 155.09013 * 9 7 2 11 11 C 1.36335 * 119.83927 * 180.02562 * 10 9 7 12 12 C 1.39566 * 120.15827 * 0.02562 * 11 10 9 13 13 N 1.38859 * 119.84382 * 179.97438 * 12 11 10 14 14 C 1.46496 * 120.00209 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.47233 * 179.97438 * 14 13 12 16 16 H 1.09006 * 115.55111 * 29.32399 * 15 14 13 17 17 C 1.53005 * 117.51953 * 243.62373 * 15 14 13 18 18 C 1.52993 * 59.99776 * 252.51977 * 17 15 14 19 19 C 1.52991 * 138.58815 * 130.90044 * 18 17 15 20 20 C 1.52993 * 60.00055 * 130.88582 * 19 18 17 21 21 C 1.39567 * 120.31709 * 0.25113 * 12 11 10 22 22 C 1.36338 * 120.16167 * 359.48858 * 21 12 11 23 23 H 0.97007 * 119.99530 * 359.97438 * 1 2 3 24 24 H 1.08001 * 120.08170 * 0.02562 * 10 9 7 25 25 H 1.08000 * 119.92369 * 179.97438 * 11 10 9 26 26 H 0.97002 * 119.99909 * 359.97438 * 13 12 11 27 27 H 1.09003 * 109.47398 * 59.99756 * 14 13 12 28 28 H 1.08997 * 109.47125 * 299.99607 * 14 13 12 29 29 H 1.08998 * 117.50016 * 145.02768 * 17 15 14 30 30 H 1.09005 * 117.49667 * 0.02562 * 17 15 14 31 31 H 1.09001 * 117.49469 * 238.37714 * 19 18 17 32 32 H 1.09003 * 117.49806 * 23.39034 * 19 18 17 33 33 H 1.09001 * 117.49868 * 252.51095 * 20 19 18 34 34 H 1.09001 * 117.52012 * 107.47762 * 20 19 18 35 35 H 1.08001 * 119.92199 * 179.71930 * 21 12 11 36 36 H 1.08001 * 120.08836 * 180.27289 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6176 0.0000 4 1 2.3923 2.1031 -1.3955 5 1 1.4933 2.6223 0.7960 6 1 3.5864 1.4137 0.5993 7 6 2.0083 -1.2114 0.0005 8 1 3.0492 -1.2340 -0.2864 9 6 1.3536 -2.4039 0.3761 10 6 1.8227 -3.6468 -0.0932 11 6 1.1850 -4.7948 0.2732 12 6 0.0698 -4.7408 1.1105 13 7 -0.5751 -5.9140 1.4791 14 6 -1.7463 -5.8613 2.3574 15 6 -2.2621 -7.2802 2.6055 16 1 -1.5086 -8.0672 2.5706 17 6 -3.6642 -7.6218 2.0972 18 6 -3.4150 -7.4496 3.5969 19 6 -4.0272 -6.7026 4.7834 20 6 -3.7067 -8.1939 4.9013 21 6 -0.4040 -3.5127 1.5745 22 6 0.2269 -2.3571 1.2206 23 1 -0.4850 0.8401 0.0004 24 1 2.6853 -3.6900 -0.7416 25 1 1.5432 -5.7482 -0.0861 26 1 -0.2504 -6.7685 1.1544 27 1 -2.5290 -5.2682 1.8843 28 1 -1.4681 -5.4043 3.3071 29 1 -3.8332 -8.6333 1.7279 30 1 -4.2194 -6.8355 1.5855 31 1 -3.3866 -6.0059 5.3241 32 1 -5.0768 -6.4175 4.7113 33 1 -4.5454 -8.8901 4.9069 34 1 -2.8552 -8.4787 5.5194 35 1 -1.2703 -3.4780 2.2186 36 1 -0.1381 -1.4078 1.5840 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707793425.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:06 Heat of formation + Delta-G solvation = 76.497716 kcal Electronic energy + Delta-G solvation = -16208.618751 eV Core-core repulsion = 13658.993462 eV Total energy + Delta-G solvation = -2549.625289 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.73929 -37.70438 -35.02761 -33.29418 -32.09838 -29.42803 -28.81984 -26.10430 -23.79969 -22.54778 -21.64944 -20.70576 -19.84562 -18.97854 -17.17361 -16.09158 -15.51111 -15.13614 -14.91650 -14.49629 -14.13216 -13.80835 -13.39961 -12.60986 -12.52947 -12.00666 -11.79941 -11.68246 -11.62541 -11.23332 -11.08784 -11.00027 -10.84315 -10.46929 -10.05854 -10.01711 -9.89829 -9.65401 -9.25480 -9.16654 -8.48051 -7.46136 -6.61187 -6.34977 -4.00203 2.93944 3.13165 3.16788 3.21917 3.37876 3.52332 3.58511 4.07825 4.10970 4.49735 4.76816 4.78363 4.82706 5.34758 5.42499 5.46426 5.50842 5.58685 5.69140 5.75238 5.84810 5.91601 5.99866 6.11365 6.27954 6.31440 6.36523 6.97085 6.97425 7.23398 7.38940 7.58895 7.72416 7.87779 8.18467 8.32658 8.52934 8.74491 8.83742 9.09134 9.18637 10.40417 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.040671 B = 0.004201 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.278145 B = 6664.025441 C = 7106.773031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.075 3.925 3 Si 0.902 3.098 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.468 4.468 8 H 0.072 0.928 9 C 0.074 3.926 10 C -0.186 4.186 11 C -0.159 4.159 12 C 0.092 3.908 13 N -0.760 5.760 14 C 0.170 3.830 15 C -0.105 4.105 16 H 0.106 0.894 17 C -0.125 4.125 18 C -0.227 4.227 19 C -0.130 4.130 20 C -0.132 4.132 21 C -0.164 4.164 22 C -0.124 4.124 23 H 0.276 0.724 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.384 0.616 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.659 -10.870 6.368 14.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.499 4.499 8 H 0.090 0.910 9 C 0.071 3.929 10 C -0.207 4.207 11 C -0.182 4.182 12 C -0.005 4.005 13 N -0.396 5.396 14 C 0.045 3.955 15 C -0.124 4.124 16 H 0.124 0.876 17 C -0.161 4.161 18 C -0.228 4.228 19 C -0.167 4.167 20 C -0.169 4.169 21 C -0.186 4.186 22 C -0.144 4.144 23 H 0.086 0.914 24 H 0.109 0.891 25 H 0.104 0.896 26 H 0.216 0.784 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.993 -10.595 6.466 14.246 hybrid contribution 0.384 0.446 -0.200 0.622 sum -6.609 -10.148 6.266 13.636 Atomic orbital electron populations 1.69866 1.07367 1.28540 1.37788 1.25792 0.94642 1.00861 0.92731 0.86416 0.80751 0.81369 0.78784 1.19882 1.20301 1.18680 1.19362 0.97878 0.91396 1.41258 0.90971 1.17491 0.92470 0.91988 0.90924 1.20545 1.02708 0.92636 1.04778 1.19805 0.97998 0.97079 1.03269 1.17355 0.95642 0.85635 1.01845 1.43838 1.32835 1.05922 1.57050 1.20500 0.88469 0.92674 0.93868 1.22274 0.91169 0.98680 1.00256 0.87562 1.22846 0.98698 1.02395 0.92199 1.21469 1.05105 1.08030 0.88174 1.22630 1.00969 0.94661 0.98394 1.22644 1.02574 0.94993 0.96707 1.20092 1.01488 0.91953 1.05066 1.20927 0.98169 0.96403 0.98920 0.91378 0.89054 0.89597 0.78376 0.93212 0.93270 0.88783 0.88361 0.88451 0.88656 0.88806 0.88733 0.89477 0.86439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.76 10.97 55.54 0.61 -21.15 16 2 C 0.07 1.96 5.13 -17.34 -0.09 1.87 16 3 Si 0.90 19.43 29.60 -169.99 -5.03 14.40 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.47 -12.91 9.03 -37.87 -0.34 -13.25 16 8 H 0.07 1.92 7.91 -52.49 -0.41 1.51 16 9 C 0.07 2.04 5.57 -106.79 -0.60 1.45 16 10 C -0.19 -4.71 9.74 -39.26 -0.38 -5.09 16 11 C -0.16 -3.66 9.82 -39.77 -0.39 -4.05 16 12 C 0.09 2.07 6.67 -83.69 -0.56 1.51 16 13 N -0.76 -13.69 5.70 -58.50 -0.33 -14.02 16 14 C 0.17 2.67 5.17 -4.04 -0.02 2.65 16 15 C -0.11 -1.32 5.85 -90.62 -0.53 -1.85 16 16 H 0.11 1.26 8.04 -51.93 -0.42 0.85 16 17 C -0.12 -1.39 10.18 -26.73 -0.27 -1.67 16 18 C -0.23 -2.59 5.39 -154.52 -0.83 -3.42 16 19 C -0.13 -1.32 10.53 -26.74 -0.28 -1.60 16 20 C -0.13 -1.25 10.53 -26.74 -0.28 -1.53 16 21 C -0.16 -3.95 9.23 -39.77 -0.37 -4.32 16 22 C -0.12 -3.33 8.63 -39.26 -0.34 -3.67 16 23 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 24 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 25 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 26 H 0.38 6.11 8.40 -40.82 -0.34 5.77 16 27 H 0.05 0.83 7.65 -51.93 -0.40 0.44 16 28 H 0.05 0.81 7.94 -51.93 -0.41 0.40 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.10 1.12 8.03 -51.93 -0.42 0.70 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 1.93 6.68 -52.49 -0.35 1.58 16 36 H 0.12 3.25 6.18 -52.49 -0.32 2.93 16 LS Contribution 305.00 15.07 4.60 4.60 Total: -1.00 -28.68 305.00 -10.61 -39.29 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -5.17 Total: 9.85 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: -5.28 Total: -32.97 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.28 Total: -35.17 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.40 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.68 -10.61 -39.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707793425.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.788 kcal (2) G-P(sol) polarization free energy of solvation -28.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds