Wall clock time and date at job start Mon Mar 30 2020 05:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86796 * 120.00332 * 2 1 4 4 H 1.48499 * 109.47050 * 274.65131 * 3 2 1 5 5 H 1.48498 * 109.47311 * 34.65002 * 3 2 1 6 6 H 1.48494 * 109.47278 * 154.65361 * 3 2 1 7 7 C 1.39869 * 119.99592 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99622 * 162.13187 * 7 2 1 9 9 C 1.41137 * 119.99921 * 342.13422 * 7 2 1 10 10 C 1.40888 * 120.15418 * 155.09013 * 9 7 2 11 11 C 1.36335 * 119.83927 * 180.02562 * 10 9 7 12 12 C 1.39566 * 120.15827 * 0.02562 * 11 10 9 13 13 N 1.38859 * 119.84382 * 179.97438 * 12 11 10 14 14 C 1.46496 * 120.00209 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.47233 * 179.97438 * 14 13 12 16 16 H 1.09006 * 115.55111 * 29.32399 * 15 14 13 17 17 C 1.53005 * 117.51953 * 243.62373 * 15 14 13 18 18 C 1.52993 * 59.99776 * 252.51977 * 17 15 14 19 19 C 1.52991 * 138.58815 * 130.90044 * 18 17 15 20 20 C 1.52993 * 60.00055 * 130.88582 * 19 18 17 21 21 C 1.39567 * 120.31709 * 0.25113 * 12 11 10 22 22 C 1.36338 * 120.16167 * 359.48858 * 21 12 11 23 23 H 0.97007 * 119.99530 * 359.97438 * 1 2 3 24 24 H 1.08001 * 120.08170 * 0.02562 * 10 9 7 25 25 H 1.08000 * 119.92369 * 179.97438 * 11 10 9 26 26 H 0.97002 * 119.99909 * 359.97438 * 13 12 11 27 27 H 1.09003 * 109.47398 * 59.99756 * 14 13 12 28 28 H 1.08997 * 109.47125 * 299.99607 * 14 13 12 29 29 H 1.08998 * 117.50016 * 145.02768 * 17 15 14 30 30 H 1.09005 * 117.49667 * 0.02562 * 17 15 14 31 31 H 1.09001 * 117.49469 * 238.37714 * 19 18 17 32 32 H 1.09003 * 117.49806 * 23.39034 * 19 18 17 33 33 H 1.09001 * 117.49868 * 252.51095 * 20 19 18 34 34 H 1.09001 * 117.52012 * 107.47762 * 20 19 18 35 35 H 1.08001 * 119.92199 * 179.71930 * 21 12 11 36 36 H 1.08001 * 120.08836 * 180.27289 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6176 0.0000 4 1 2.3923 2.1031 -1.3955 5 1 1.4933 2.6223 0.7960 6 1 3.5864 1.4137 0.5993 7 6 2.0083 -1.2114 0.0005 8 1 3.0492 -1.2340 -0.2864 9 6 1.3536 -2.4039 0.3761 10 6 1.8227 -3.6468 -0.0932 11 6 1.1850 -4.7948 0.2732 12 6 0.0698 -4.7408 1.1105 13 7 -0.5751 -5.9140 1.4791 14 6 -1.7463 -5.8613 2.3574 15 6 -2.2621 -7.2802 2.6055 16 1 -1.5086 -8.0672 2.5706 17 6 -3.6642 -7.6218 2.0972 18 6 -3.4150 -7.4496 3.5969 19 6 -4.0272 -6.7026 4.7834 20 6 -3.7067 -8.1939 4.9013 21 6 -0.4040 -3.5127 1.5745 22 6 0.2269 -2.3571 1.2206 23 1 -0.4850 0.8401 0.0004 24 1 2.6853 -3.6900 -0.7416 25 1 1.5432 -5.7482 -0.0861 26 1 -0.2504 -6.7685 1.1544 27 1 -2.5290 -5.2682 1.8843 28 1 -1.4681 -5.4043 3.3071 29 1 -3.8332 -8.6333 1.7279 30 1 -4.2194 -6.8355 1.5855 31 1 -3.3866 -6.0059 5.3241 32 1 -5.0768 -6.4175 4.7113 33 1 -4.5454 -8.8901 4.9069 34 1 -2.8552 -8.4787 5.5194 35 1 -1.2703 -3.4780 2.2186 36 1 -0.1381 -1.4078 1.5840 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707793425.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:06 Heat of formation + Delta-G solvation = 62.455247 kcal Electronic energy + Delta-G solvation = -16209.227679 eV Core-core repulsion = 13658.993462 eV Total energy + Delta-G solvation = -2550.234216 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.99395 -39.21633 -36.63400 -34.92056 -33.35612 -31.36190 -30.59901 -27.66730 -25.56668 -23.32525 -23.20814 -22.19923 -21.50524 -19.94513 -19.15407 -17.71923 -16.88506 -16.65326 -15.90958 -15.80461 -15.56371 -15.33611 -14.79278 -14.41152 -14.24419 -13.81663 -13.56401 -13.19251 -12.73333 -12.68262 -12.46868 -12.37308 -12.26482 -12.17182 -11.60043 -11.20474 -11.14235 -10.92184 -10.83231 -10.78992 -10.25333 -9.41689 -8.55097 -8.17351 -6.01163 1.10249 1.17754 1.40457 1.53113 1.59378 2.27817 2.54650 2.74740 2.84527 3.00857 3.44079 3.82444 3.86393 3.93962 4.27995 4.41915 4.48088 4.52472 4.56107 4.75202 4.79540 4.82053 4.86176 4.94446 5.00364 5.03759 5.12382 5.22904 5.26909 5.29125 5.45185 5.67909 5.79888 5.95682 6.18596 6.38330 6.66165 6.85899 7.08188 7.14521 7.31963 8.48494 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.040671 B = 0.004201 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.278145 B = 6664.025441 C = 7106.773031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.031 3.969 3 Si 0.977 3.023 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.507 4.507 8 H 0.069 0.931 9 C 0.036 3.964 10 C -0.195 4.195 11 C -0.164 4.164 12 C 0.109 3.891 13 N -0.749 5.749 14 C 0.172 3.828 15 C -0.114 4.114 16 H 0.117 0.883 17 C -0.118 4.118 18 C -0.243 4.243 19 C -0.138 4.138 20 C -0.116 4.116 21 C -0.176 4.176 22 C -0.144 4.144 23 H 0.282 0.718 24 H 0.099 0.901 25 H 0.120 0.880 26 H 0.398 0.602 27 H 0.038 0.962 28 H 0.040 0.960 29 H 0.112 0.888 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.111 -12.431 6.842 15.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.180 4.180 3 Si 0.799 3.201 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.185 1.185 7 C -0.538 4.538 8 H 0.087 0.913 9 C 0.033 3.967 10 C -0.215 4.215 11 C -0.186 4.186 12 C 0.009 3.991 13 N -0.384 5.384 14 C 0.047 3.953 15 C -0.132 4.132 16 H 0.135 0.865 17 C -0.154 4.154 18 C -0.243 4.243 19 C -0.174 4.174 20 C -0.153 4.153 21 C -0.198 4.198 22 C -0.164 4.164 23 H 0.092 0.908 24 H 0.117 0.883 25 H 0.138 0.862 26 H 0.233 0.767 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.131 0.869 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.123 0.877 33 H 0.129 0.871 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.460 -12.207 6.947 15.904 hybrid contribution 0.443 0.758 -0.301 0.929 sum -7.017 -11.449 6.646 14.982 Atomic orbital electron populations 1.69931 1.08823 1.29789 1.38509 1.26634 0.95446 1.04167 0.91784 0.85276 0.79162 0.76568 0.79134 1.18970 1.19298 1.18474 1.19606 0.98039 0.92772 1.43387 0.91298 1.17822 0.93539 0.93133 0.92206 1.20776 1.03111 0.92822 1.04795 1.20117 0.97767 0.97803 1.02934 1.17476 0.94998 0.86545 1.00061 1.43871 1.32858 1.05110 1.56601 1.20520 0.87173 0.95010 0.92611 1.22097 0.92098 0.96644 1.02366 0.86545 1.22886 0.97108 1.03197 0.92232 1.21644 1.03912 1.09903 0.88868 1.22746 1.01408 0.95489 0.97787 1.22773 1.03187 0.94589 0.94757 1.20230 1.01948 0.92038 1.05591 1.20850 0.98997 0.96590 0.99991 0.90765 0.88296 0.86215 0.76719 0.94334 0.94232 0.86934 0.88940 0.88956 0.87699 0.87056 0.88106 0.88165 0.88385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.75 10.97 21.82 0.24 -46.51 16 2 C 0.03 1.68 5.13 85.23 0.44 2.12 16 3 Si 0.98 40.56 29.60 68.60 2.03 42.59 16 4 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 5 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 6 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.51 -28.94 9.03 23.38 0.21 -28.73 16 8 H 0.07 3.80 7.91 -2.91 -0.02 3.78 16 9 C 0.04 2.04 5.57 -21.27 -0.12 1.92 16 10 C -0.19 -9.92 9.74 22.47 0.22 -9.70 16 11 C -0.16 -7.33 9.82 22.15 0.22 -7.11 16 12 C 0.11 4.76 6.67 38.67 0.26 5.02 16 13 N -0.75 -25.51 5.70 -339.00 -1.93 -27.44 16 14 C 0.17 5.17 5.17 86.38 0.45 5.62 16 15 C -0.11 -2.60 5.85 -10.79 -0.06 -2.67 16 16 H 0.12 2.43 8.04 -2.38 -0.02 2.41 16 17 C -0.12 -2.34 10.18 30.59 0.31 -2.03 16 18 C -0.24 -4.96 5.39 -52.19 -0.28 -5.24 16 19 C -0.14 -2.54 10.53 30.59 0.32 -2.22 16 20 C -0.12 -1.85 10.53 30.59 0.32 -1.53 16 21 C -0.18 -8.57 9.23 22.15 0.20 -8.36 16 22 C -0.14 -8.00 8.63 22.48 0.19 -7.80 16 23 H 0.28 14.22 8.30 -92.70 -0.77 13.45 16 24 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 25 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 26 H 0.40 11.53 8.40 -92.71 -0.78 10.75 16 27 H 0.04 1.26 7.65 -2.39 -0.02 1.24 16 28 H 0.04 1.28 7.94 -2.39 -0.02 1.26 16 29 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.09 1.94 8.03 -2.38 -0.02 1.92 16 31 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.10 4.49 6.68 -2.91 -0.02 4.47 16 36 H 0.10 5.72 6.18 -2.91 -0.02 5.70 16 Total: -1.00 -62.78 305.00 3.31 -59.47 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: 0.29 Total: 32.62 kcal Atomic # 6 Polarization: -63.40 SS G_CDS: 2.68 Total: -60.72 kcal Atomic # 7 Polarization: -72.27 SS G_CDS: -1.69 Total: -73.96 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -62.78 3.31 -59.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707793425.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.927 kcal (2) G-P(sol) polarization free energy of solvation -62.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds