Wall clock time and date at job start Mon Mar 30 2020 05:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00335 * 2 1 4 4 H 1.48498 * 109.47080 * 239.99937 * 3 2 1 5 5 H 1.48493 * 109.46984 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47108 * 120.00075 * 3 2 1 7 7 C 1.37885 * 119.99646 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 184.29210 * 7 2 1 9 9 C 1.50697 * 120.00093 * 4.29176 * 7 2 1 10 10 H 1.08997 * 109.47478 * 24.83450 * 9 7 2 11 11 N 1.46900 * 109.47238 * 144.83994 * 9 7 2 12 12 C 1.46895 * 110.99548 * 274.99746 * 11 9 7 13 13 H 1.08997 * 115.55590 * 9.33350 * 12 11 9 14 14 C 1.53002 * 117.49869 * 223.61728 * 12 11 9 15 15 C 1.52989 * 60.00089 * 252.51809 * 14 12 11 16 16 C 1.52993 * 138.59337 * 130.89419 * 15 14 12 17 17 C 1.52995 * 138.58807 * 229.11115 * 15 14 12 18 18 C 1.50703 * 109.46888 * 264.83986 * 9 7 2 19 19 C 1.38238 * 119.99891 * 104.74539 * 18 9 7 20 20 C 1.38237 * 119.99741 * 179.97438 * 19 18 9 21 21 C 1.38238 * 120.00097 * 0.02562 * 20 19 18 22 22 C 1.38231 * 119.99699 * 0.25529 * 21 20 19 23 23 C 1.38233 * 119.99981 * 284.76838 * 18 9 7 24 24 H 0.96995 * 119.99770 * 0.02562 * 1 2 3 25 25 H 1.00896 * 110.99373 * 38.95452 * 11 9 7 26 26 H 1.09008 * 117.49846 * 0.02562 * 14 12 11 27 27 H 1.08999 * 117.50492 * 145.02618 * 14 12 11 28 28 H 1.09004 * 117.50192 * 238.38192 * 16 15 14 29 29 H 1.09008 * 117.49815 * 23.40245 * 16 15 14 30 30 H 1.09003 * 117.49786 * 336.59134 * 17 15 14 31 31 H 1.09002 * 117.50417 * 121.58925 * 17 15 14 32 32 H 1.07999 * 120.00391 * 0.02562 * 19 18 9 33 33 H 1.08000 * 119.99617 * 180.02562 * 20 19 18 34 34 H 1.08001 * 119.99836 * 179.97438 * 21 20 19 35 35 H 1.08006 * 119.99549 * 179.72510 * 22 21 20 36 36 H 1.07995 * 119.99989 * 359.97438 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0822 -1.1956 0.0695 9 6 1.2541 -2.4973 -0.0988 10 1 0.2947 -2.3282 -0.5875 11 7 2.0412 -3.4576 -0.8839 12 6 1.8009 -3.2834 -2.3226 13 1 1.2264 -2.3996 -2.5997 14 6 1.6053 -4.5462 -3.1641 15 6 2.9007 -3.7409 -3.2828 16 6 4.4106 -3.9869 -3.2645 17 6 3.7859 -3.1467 -4.3801 18 6 1.0228 -3.0493 1.2843 19 6 -0.2316 -2.9689 1.8597 20 6 -0.4439 -3.4757 3.1282 21 6 0.5984 -4.0623 3.8215 22 6 1.8540 -4.1373 3.2484 23 6 2.0651 -3.6354 1.9778 24 1 -0.4849 0.8400 -0.0004 25 1 3.0240 -3.3804 -0.6694 26 1 1.6545 -5.5062 -2.6501 27 1 0.9019 -4.4934 -3.9950 28 1 4.9966 -3.4641 -2.5086 29 1 4.7608 -4.9863 -3.5230 30 1 3.7251 -3.5933 -5.3726 31 1 3.9607 -2.0710 -4.3585 32 1 -1.0459 -2.5111 1.3179 33 1 -1.4240 -3.4133 3.5775 34 1 0.4326 -4.4578 4.8127 35 1 2.6693 -4.5916 3.7919 36 1 3.0450 -3.6981 1.5283 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715235256.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:25 Heat of formation + Delta-G solvation = 79.714585 kcal Electronic energy + Delta-G solvation = -16991.442710 eV Core-core repulsion = 14441.956915 eV Total energy + Delta-G solvation = -2549.485795 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.46325 -37.75237 -34.78084 -32.52562 -31.21856 -29.93852 -29.02656 -25.90270 -22.95226 -22.10595 -21.65836 -20.57961 -19.73239 -18.72322 -16.70320 -15.99993 -15.01058 -14.85574 -14.62185 -14.44504 -13.94479 -13.70207 -13.10845 -12.47897 -12.33849 -11.81091 -11.74206 -11.53686 -11.25300 -11.14915 -11.03211 -10.96295 -10.36655 -10.21165 -10.16306 -9.62087 -9.58060 -9.47873 -9.26353 -8.62161 -7.96913 -7.67794 -7.27692 -6.15211 -4.26563 2.36981 2.42452 3.22682 3.27601 3.30326 4.06881 4.27085 4.30044 4.74701 4.82363 5.08127 5.16765 5.36800 5.71619 5.77846 5.81810 5.86774 5.92445 5.96332 6.13216 6.18508 6.21984 6.31603 6.41407 6.42184 6.48982 6.62383 6.69330 6.89304 7.05776 7.20413 7.38230 7.50167 7.68249 7.76712 7.98838 8.06022 8.15458 8.53901 8.85812 9.40373 10.86626 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.014414 B = 0.009530 C = 0.006634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.100186 B = 2937.503425 C = 4219.906057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.074 3.926 3 Si 0.891 3.109 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.539 4.539 8 H 0.057 0.943 9 C 0.230 3.770 10 H 0.074 0.926 11 N -0.657 5.657 12 C 0.106 3.894 13 H 0.102 0.898 14 C -0.130 4.130 15 C -0.246 4.246 16 C -0.130 4.130 17 C -0.137 4.137 18 C -0.009 4.009 19 C -0.111 4.111 20 C -0.130 4.130 21 C -0.156 4.156 22 C -0.133 4.133 23 C -0.113 4.113 24 H 0.265 0.735 25 H 0.331 0.669 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.119 0.881 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.129 -6.340 -1.979 7.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.130 4.130 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.578 4.578 8 H 0.075 0.925 9 C 0.123 3.877 10 H 0.092 0.908 11 N -0.285 5.285 12 C -0.005 4.005 13 H 0.119 0.881 14 C -0.168 4.168 15 C -0.247 4.247 16 C -0.167 4.167 17 C -0.174 4.174 18 C -0.010 4.010 19 C -0.130 4.130 20 C -0.148 4.148 21 C -0.174 4.174 22 C -0.151 4.151 23 C -0.132 4.132 24 H 0.075 0.925 25 H 0.150 0.850 26 H 0.112 0.888 27 H 0.105 0.895 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.137 0.863 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.488 -6.712 -1.891 7.404 hybrid contribution 0.999 1.884 -0.008 2.132 sum 3.487 -4.828 -1.899 6.251 Atomic orbital electron populations 1.69886 1.05902 1.27256 1.48557 1.24960 0.94872 0.99258 0.93956 0.86663 0.79768 0.82960 0.78748 1.20177 1.21114 1.20107 1.21586 0.93114 0.90800 1.52314 0.92529 1.18453 0.95646 0.86939 0.86687 0.90817 1.60628 1.12311 1.53747 1.01859 1.22043 0.96238 0.95747 0.86519 0.88087 1.22952 0.94872 0.97409 1.01595 1.21921 0.89588 1.08731 1.04500 1.22459 0.92912 1.00346 1.00934 1.22564 1.02437 0.99146 0.93247 1.20408 0.91677 0.90803 0.98137 1.21047 0.97618 0.99170 0.95128 1.20971 0.98116 1.00129 0.95566 1.20777 0.93799 1.03405 0.99419 1.20930 0.96486 1.01683 0.95998 1.20805 0.98882 0.99367 0.94123 0.92486 0.85041 0.88819 0.89524 0.88994 0.89369 0.89414 0.89028 0.86304 0.87652 0.87870 0.87779 0.87414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.92 12.83 55.43 0.71 -23.21 16 2 C 0.07 1.96 5.45 -17.82 -0.10 1.87 16 3 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.54 -13.92 8.19 -34.44 -0.28 -14.21 16 8 H 0.06 1.47 7.76 -52.49 -0.41 1.06 16 9 C 0.23 5.47 2.16 -70.02 -0.15 5.32 16 10 H 0.07 1.95 6.77 -51.93 -0.35 1.60 16 11 N -0.66 -13.68 6.06 -102.18 -0.62 -14.30 16 12 C 0.11 2.06 6.02 -67.72 -0.41 1.65 16 13 H 0.10 2.19 7.77 -51.93 -0.40 1.79 16 14 C -0.13 -2.14 10.46 -26.74 -0.28 -2.42 16 15 C -0.25 -4.10 5.47 -154.52 -0.85 -4.95 16 16 C -0.13 -1.87 10.53 -26.74 -0.28 -2.15 16 17 C -0.14 -1.97 10.53 -26.73 -0.28 -2.25 16 18 C -0.01 -0.21 4.93 -104.62 -0.52 -0.72 16 19 C -0.11 -2.46 9.67 -39.58 -0.38 -2.84 16 20 C -0.13 -2.51 10.05 -39.58 -0.40 -2.90 16 21 C -0.16 -2.82 10.05 -39.58 -0.40 -3.22 16 22 C -0.13 -2.48 10.05 -39.59 -0.40 -2.87 16 23 C -0.11 -2.36 9.28 -39.58 -0.37 -2.73 16 24 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 25 H 0.33 6.79 7.81 -39.29 -0.31 6.49 16 26 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 27 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 28 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.09 1.13 8.14 -51.92 -0.42 0.71 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 32 H 0.12 2.72 8.00 -52.49 -0.42 2.30 16 33 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 34 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 36 H 0.11 2.14 7.41 -52.49 -0.39 1.75 16 LS Contribution 309.44 15.07 4.66 4.66 Total: -1.00 -26.77 309.44 -10.57 -37.34 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -5.22 Total: 12.23 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: -5.09 Total: -32.44 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.09 Total: -37.51 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -26.77 -10.57 -37.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715235256.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.051 kcal (2) G-P(sol) polarization free energy of solvation -26.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds