Wall clock time and date at job start Mon Mar 30 2020 05:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00335 * 2 1 4 4 H 1.48498 * 109.47080 * 239.99937 * 3 2 1 5 5 H 1.48493 * 109.46984 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47108 * 120.00075 * 3 2 1 7 7 C 1.37885 * 119.99646 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 184.29210 * 7 2 1 9 9 C 1.50697 * 120.00093 * 4.29176 * 7 2 1 10 10 H 1.08997 * 109.47478 * 24.83450 * 9 7 2 11 11 N 1.46900 * 109.47238 * 144.83994 * 9 7 2 12 12 C 1.46895 * 110.99548 * 274.99746 * 11 9 7 13 13 H 1.08997 * 115.55590 * 9.33350 * 12 11 9 14 14 C 1.53002 * 117.49869 * 223.61728 * 12 11 9 15 15 C 1.52989 * 60.00089 * 252.51809 * 14 12 11 16 16 C 1.52993 * 138.59337 * 130.89419 * 15 14 12 17 17 C 1.52995 * 138.58807 * 229.11115 * 15 14 12 18 18 C 1.50703 * 109.46888 * 264.83986 * 9 7 2 19 19 C 1.38238 * 119.99891 * 104.74539 * 18 9 7 20 20 C 1.38237 * 119.99741 * 179.97438 * 19 18 9 21 21 C 1.38238 * 120.00097 * 0.02562 * 20 19 18 22 22 C 1.38231 * 119.99699 * 0.25529 * 21 20 19 23 23 C 1.38233 * 119.99981 * 284.76838 * 18 9 7 24 24 H 0.96995 * 119.99770 * 0.02562 * 1 2 3 25 25 H 1.00896 * 110.99373 * 38.95452 * 11 9 7 26 26 H 1.09008 * 117.49846 * 0.02562 * 14 12 11 27 27 H 1.08999 * 117.50492 * 145.02618 * 14 12 11 28 28 H 1.09004 * 117.50192 * 238.38192 * 16 15 14 29 29 H 1.09008 * 117.49815 * 23.40245 * 16 15 14 30 30 H 1.09003 * 117.49786 * 336.59134 * 17 15 14 31 31 H 1.09002 * 117.50417 * 121.58925 * 17 15 14 32 32 H 1.07999 * 120.00391 * 0.02562 * 19 18 9 33 33 H 1.08000 * 119.99617 * 180.02562 * 20 19 18 34 34 H 1.08001 * 119.99836 * 179.97438 * 21 20 19 35 35 H 1.08006 * 119.99549 * 179.72510 * 22 21 20 36 36 H 1.07995 * 119.99989 * 359.97438 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0822 -1.1956 0.0695 9 6 1.2541 -2.4973 -0.0988 10 1 0.2947 -2.3282 -0.5875 11 7 2.0412 -3.4576 -0.8839 12 6 1.8009 -3.2834 -2.3226 13 1 1.2264 -2.3996 -2.5997 14 6 1.6053 -4.5462 -3.1641 15 6 2.9007 -3.7409 -3.2828 16 6 4.4106 -3.9869 -3.2645 17 6 3.7859 -3.1467 -4.3801 18 6 1.0228 -3.0493 1.2843 19 6 -0.2316 -2.9689 1.8597 20 6 -0.4439 -3.4757 3.1282 21 6 0.5984 -4.0623 3.8215 22 6 1.8540 -4.1373 3.2484 23 6 2.0651 -3.6354 1.9778 24 1 -0.4849 0.8400 -0.0004 25 1 3.0240 -3.3804 -0.6694 26 1 1.6545 -5.5062 -2.6501 27 1 0.9019 -4.4934 -3.9950 28 1 4.9966 -3.4641 -2.5086 29 1 4.7608 -4.9863 -3.5230 30 1 3.7251 -3.5933 -5.3726 31 1 3.9607 -2.0710 -4.3585 32 1 -1.0459 -2.5111 1.3179 33 1 -1.4240 -3.4133 3.5775 34 1 0.4326 -4.4578 4.8127 35 1 2.6693 -4.5916 3.7919 36 1 3.0450 -3.6981 1.5283 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715235256.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:25 Heat of formation + Delta-G solvation = 66.434988 kcal Electronic energy + Delta-G solvation = -16992.018557 eV Core-core repulsion = 14441.956915 eV Total energy + Delta-G solvation = -2550.061642 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.04198 -39.14308 -36.43639 -34.27079 -32.82080 -31.50543 -30.56642 -27.81704 -24.71195 -23.28118 -23.20864 -22.05072 -21.41587 -20.11613 -18.65663 -17.51496 -16.82753 -16.33758 -16.10625 -15.79666 -15.49275 -15.24419 -14.89360 -14.00790 -13.91536 -13.56010 -13.32553 -13.27127 -12.85760 -12.74432 -12.58166 -12.34652 -12.16204 -11.85735 -11.70258 -11.38701 -11.05732 -10.87116 -10.71498 -10.56697 -9.54148 -9.28385 -8.98814 -8.13076 -6.33114 0.78463 0.85162 1.35586 1.35669 1.42946 2.34832 2.81017 2.91246 3.06884 3.26501 3.45248 3.63487 4.10230 4.28203 4.33837 4.39532 4.48503 4.65605 4.74887 4.75738 4.79732 4.87373 4.92224 4.94280 5.02414 5.07124 5.13928 5.19928 5.30520 5.44896 5.49528 5.62147 5.82994 5.90650 5.99741 6.20253 6.34251 6.46746 6.81165 6.89628 7.36011 8.84676 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.014414 B = 0.009530 C = 0.006634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.100186 B = 2937.503425 C = 4219.906057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.027 3.973 3 Si 0.948 3.052 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.051 0.949 9 C 0.241 3.759 10 H 0.033 0.967 11 N -0.647 5.647 12 C 0.067 3.933 13 H 0.065 0.935 14 C -0.109 4.109 15 C -0.259 4.259 16 C -0.118 4.118 17 C -0.126 4.126 18 C -0.038 4.038 19 C -0.138 4.138 20 C -0.130 4.130 21 C -0.147 4.147 22 C -0.128 4.128 23 C -0.126 4.126 24 H 0.263 0.737 25 H 0.330 0.670 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.089 0.911 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.131 0.869 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.742 -7.667 -1.235 9.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.175 4.175 3 Si 0.773 3.227 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.585 4.585 8 H 0.069 0.931 9 C 0.133 3.867 10 H 0.051 0.949 11 N -0.275 5.275 12 C -0.044 4.044 13 H 0.082 0.918 14 C -0.147 4.147 15 C -0.260 4.260 16 C -0.155 4.155 17 C -0.163 4.163 18 C -0.039 4.039 19 C -0.157 4.157 20 C -0.148 4.148 21 C -0.165 4.165 22 C -0.146 4.146 23 C -0.145 4.145 24 H 0.073 0.927 25 H 0.148 0.852 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.107 0.893 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.104 0.896 32 H 0.112 0.888 33 H 0.149 0.851 34 H 0.163 0.837 35 H 0.159 0.841 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.108 -8.050 -1.159 9.112 hybrid contribution 0.496 2.232 -0.229 2.298 sum 4.604 -5.818 -1.389 7.548 Atomic orbital electron populations 1.70020 1.07057 1.27588 1.49877 1.25653 0.95588 1.02167 0.94072 0.85773 0.78611 0.79556 0.78728 1.19693 1.20871 1.19866 1.21815 0.92909 0.92074 1.51656 0.93073 1.18125 0.93807 0.87131 0.87641 0.94886 1.60651 1.11783 1.52478 1.02554 1.21904 0.99448 0.96548 0.86457 0.91755 1.22911 0.95262 0.95887 1.00682 1.22023 0.90707 1.08316 1.04951 1.22626 0.90672 1.01621 1.00549 1.22722 1.00346 0.99157 0.94121 1.20393 0.92908 0.92779 0.97811 1.21031 0.96975 1.00898 0.96795 1.21277 1.00033 0.99183 0.94318 1.21249 0.92869 1.01670 1.00741 1.21350 0.97954 1.00299 0.94963 1.20929 0.98384 0.99802 0.95358 0.92745 0.85212 0.88357 0.88005 0.89258 0.86889 0.86784 0.89576 0.88802 0.85071 0.83745 0.84129 0.87089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.89 12.83 21.45 0.28 -51.62 16 2 C 0.03 1.46 5.45 84.66 0.46 1.93 16 3 Si 0.95 43.52 29.54 68.60 2.03 45.55 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.55 -29.36 8.19 25.60 0.21 -29.15 16 8 H 0.05 2.74 7.76 -2.91 -0.02 2.71 16 9 C 0.24 12.14 2.16 43.42 0.09 12.23 16 10 H 0.03 1.90 6.77 -2.39 -0.02 1.89 16 11 N -0.65 -28.07 6.06 -477.20 -2.89 -30.96 16 12 C 0.07 2.74 6.02 44.92 0.27 3.01 16 13 H 0.06 3.05 7.77 -2.39 -0.02 3.03 16 14 C -0.11 -3.57 10.46 30.59 0.32 -3.25 16 15 C -0.26 -8.44 5.47 -52.19 -0.29 -8.72 16 16 C -0.12 -3.14 10.53 30.59 0.32 -2.82 16 17 C -0.13 -3.39 10.53 30.59 0.32 -3.07 16 18 C -0.04 -1.78 4.93 -19.86 -0.10 -1.88 16 19 C -0.14 -6.33 9.67 22.27 0.22 -6.11 16 20 C -0.13 -4.86 10.05 22.27 0.22 -4.64 16 21 C -0.15 -4.85 10.05 22.27 0.22 -4.62 16 22 C -0.13 -4.40 10.05 22.27 0.22 -4.17 16 23 C -0.13 -5.20 9.28 22.27 0.21 -5.00 16 24 H 0.26 14.44 8.31 -92.71 -0.77 13.66 16 25 H 0.33 13.93 7.81 -89.70 -0.70 13.23 16 26 H 0.10 3.10 8.14 -2.38 -0.02 3.08 16 27 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 28 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 29 H 0.11 2.49 8.14 -2.38 -0.02 2.47 16 30 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.09 4.64 8.00 -2.91 -0.02 4.62 16 33 H 0.13 4.12 8.06 -2.91 -0.02 4.09 16 34 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 35 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 36 H 0.11 4.38 7.41 -2.91 -0.02 4.36 16 Total: -1.00 -60.28 309.44 2.48 -57.80 By element: Atomic # 1 Polarization: 35.13 SS G_CDS: 0.36 Total: 35.49 kcal Atomic # 6 Polarization: -58.98 SS G_CDS: 2.71 Total: -56.27 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -2.62 Total: -82.58 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -60.28 2.48 -57.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715235256.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.236 kcal (2) G-P(sol) polarization free energy of solvation -60.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds