Wall clock time and date at job start Mon Mar 30 2020 05:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86807 * 119.99760 * 2 1 4 4 H 1.48495 * 109.46697 * 269.99776 * 3 2 1 5 5 H 1.48502 * 109.47148 * 29.99590 * 3 2 1 6 6 H 1.48493 * 109.47058 * 149.99632 * 3 2 1 7 7 C 1.37869 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99891 * 184.27009 * 7 2 1 9 9 C 1.50702 * 120.00281 * 4.27539 * 7 2 1 10 10 H 1.08991 * 109.46826 * 24.83188 * 9 7 2 11 11 N 1.46903 * 109.47076 * 144.83666 * 9 7 2 12 12 C 1.46903 * 110.99638 * 274.99870 * 11 9 7 13 13 H 1.08993 * 115.55368 * 350.58531 * 12 11 9 14 14 C 1.53002 * 117.49534 * 136.25673 * 12 11 9 15 15 C 1.52999 * 117.49457 * 204.91264 * 12 11 9 16 16 C 1.52992 * 138.58540 * 121.62030 * 15 12 11 17 17 C 1.52985 * 138.59145 * 23.40704 * 15 12 11 18 18 C 1.50700 * 109.46819 * 264.83547 * 9 7 2 19 19 C 1.38230 * 119.99845 * 104.75047 * 18 9 7 20 20 C 1.38239 * 120.00239 * 179.97438 * 19 18 9 21 21 C 1.38234 * 119.99665 * 0.02562 * 20 19 18 22 22 C 1.38243 * 120.00334 * 359.97438 * 21 20 19 23 23 C 1.38238 * 119.99651 * 0.04391 * 22 21 20 24 24 H 0.97002 * 119.99836 * 0.02562 * 1 2 3 25 25 H 1.00894 * 111.00146 * 38.95274 * 11 9 7 26 26 H 1.08999 * 117.49973 * 214.97722 * 14 12 11 27 27 H 1.08998 * 117.50048 * 359.97438 * 14 12 11 28 28 H 1.08998 * 117.49979 * 336.59454 * 16 15 12 29 29 H 1.09009 * 117.49740 * 121.61557 * 16 15 12 30 30 H 1.08999 * 117.50106 * 238.38132 * 17 15 12 31 31 H 1.09008 * 117.49748 * 23.37652 * 17 15 12 32 32 H 1.08000 * 120.00285 * 359.97438 * 19 18 9 33 33 H 1.07997 * 120.00627 * 179.97438 * 20 19 18 34 34 H 1.08004 * 120.00440 * 179.69965 * 21 20 19 35 35 H 1.07991 * 120.00203 * 179.97438 * 22 21 20 36 36 H 1.07992 * 120.00008 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0824 -1.1952 0.0702 9 6 1.2542 -2.4974 -0.0962 10 1 0.2947 -2.3287 -0.5848 11 7 2.0412 -3.4583 -0.8806 12 6 1.8005 -3.2856 -2.3194 13 1 0.9847 -2.6123 -2.5821 14 6 3.0161 -3.3185 -3.2479 15 6 2.0377 -4.4955 -3.2255 16 6 1.2546 -5.3558 -4.2191 17 6 2.0794 -6.0208 -3.1154 18 6 1.0234 -3.0479 1.2875 19 6 -0.2307 -2.9672 1.8631 20 6 -0.4427 -3.4727 3.1322 21 6 0.5998 -4.0583 3.8259 22 6 1.8541 -4.1391 3.2503 23 6 2.0660 -3.6332 1.9813 24 1 -0.4850 0.8401 -0.0004 25 1 3.0241 -3.3809 -0.6665 26 1 2.9999 -2.6671 -4.1217 27 1 3.9945 -3.4679 -2.7911 28 1 0.1694 -5.3782 -4.1194 29 1 1.6346 -5.4190 -5.2389 30 1 3.0020 -6.5215 -3.4088 31 1 1.5371 -6.4808 -2.2892 32 1 -1.0451 -2.5093 1.3214 33 1 -1.4224 -3.4093 3.5821 34 1 0.4355 -4.4489 4.8193 35 1 2.6686 -4.5962 3.7923 36 1 3.0460 -3.6959 1.5318 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715235275.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:28 Heat of formation + Delta-G solvation = 80.142512 kcal Electronic energy + Delta-G solvation = -16965.814819 eV Core-core repulsion = 14416.347580 eV Total energy + Delta-G solvation = -2549.467239 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 243.132 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.46290 -37.72672 -34.83141 -32.56386 -31.19791 -29.94028 -28.93675 -25.89388 -22.88681 -22.05184 -21.72592 -20.82882 -19.81135 -18.49837 -16.72127 -15.99941 -15.01518 -14.76553 -14.60631 -14.36608 -13.93459 -13.63778 -13.26581 -12.47594 -12.34337 -12.01610 -11.76644 -11.38598 -11.23016 -11.09950 -10.98719 -10.94086 -10.36920 -10.30608 -10.17471 -9.64690 -9.52717 -9.46810 -9.28558 -8.62017 -7.97343 -7.68182 -7.23489 -6.15049 -4.26425 2.36515 2.41952 3.21490 3.29010 3.31760 4.10179 4.27772 4.31184 4.74185 4.87176 5.16687 5.22856 5.37513 5.65979 5.71495 5.80021 5.89907 5.91212 6.02492 6.15328 6.17394 6.23893 6.28030 6.38830 6.47988 6.48800 6.55704 6.68007 6.89474 7.05075 7.19551 7.37782 7.49475 7.68610 7.75623 7.98098 8.05490 8.14529 8.52807 8.85887 9.40602 10.86688 Molecular weight = 243.13amu Principal moments of inertia in cm(-1) A = 0.013570 B = 0.009821 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.902513 B = 2850.480321 C = 4332.858940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.074 3.926 3 Si 0.892 3.108 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.538 4.538 8 H 0.058 0.942 9 C 0.231 3.769 10 H 0.073 0.927 11 N -0.656 5.656 12 C 0.114 3.886 13 H 0.108 0.892 14 C -0.156 4.156 15 C -0.232 4.232 16 C -0.138 4.138 17 C -0.125 4.125 18 C -0.009 4.009 19 C -0.111 4.111 20 C -0.130 4.130 21 C -0.156 4.156 22 C -0.133 4.133 23 C -0.113 4.113 24 H 0.265 0.735 25 H 0.331 0.669 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.119 0.881 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.058 -7.189 -1.813 7.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.577 4.577 8 H 0.076 0.924 9 C 0.123 3.877 10 H 0.091 0.909 11 N -0.284 5.284 12 C 0.002 3.998 13 H 0.125 0.875 14 C -0.195 4.195 15 C -0.233 4.233 16 C -0.175 4.175 17 C -0.162 4.162 18 C -0.011 4.011 19 C -0.130 4.130 20 C -0.148 4.148 21 C -0.174 4.174 22 C -0.151 4.151 23 C -0.131 4.131 24 H 0.074 0.926 25 H 0.149 0.851 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.137 0.863 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.423 -7.559 -1.709 7.880 hybrid contribution 1.021 1.882 -0.045 2.141 sum 2.444 -5.677 -1.753 6.425 Atomic orbital electron populations 1.69902 1.05919 1.27144 1.48711 1.24963 0.94873 0.99297 0.93968 0.86592 0.80025 0.83270 0.78172 1.20523 1.21112 1.19816 1.21619 0.93188 0.90715 1.52134 0.92376 1.18459 0.95600 0.86938 0.86661 0.90883 1.60468 1.12290 1.53602 1.02004 1.21959 0.97591 0.93727 0.86534 0.87471 1.23180 0.95216 0.98220 1.02895 1.21924 1.06208 0.90059 1.05143 1.22555 0.97967 1.02794 0.94192 1.22414 1.00930 0.92640 1.00223 1.20413 0.91666 0.90838 0.98144 1.21046 0.97629 0.99181 0.95140 1.20970 0.98114 1.00140 0.95563 1.20780 0.93824 1.03415 0.99372 1.20933 0.96499 1.01647 0.96028 1.20808 0.98873 0.99314 0.94150 0.92555 0.85056 0.89432 0.89184 0.89135 0.89543 0.89784 0.88751 0.86330 0.87657 0.87868 0.87771 0.87388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.86 12.83 55.43 0.71 -23.15 16 2 C 0.07 1.94 5.45 -17.82 -0.10 1.84 16 3 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.54 -13.76 8.19 -34.44 -0.28 -14.04 16 8 H 0.06 1.49 7.76 -52.48 -0.41 1.08 16 9 C 0.23 5.45 2.23 -70.01 -0.16 5.29 16 10 H 0.07 1.93 6.60 -51.93 -0.34 1.58 16 11 N -0.66 -13.56 6.09 -102.18 -0.62 -14.18 16 12 C 0.11 2.20 6.14 -67.71 -0.42 1.79 16 13 H 0.11 2.27 7.60 -51.93 -0.39 1.88 16 14 C -0.16 -2.60 10.23 -26.69 -0.27 -2.87 16 15 C -0.23 -3.86 5.60 -154.48 -0.87 -4.73 16 16 C -0.14 -1.95 10.53 -26.74 -0.28 -2.23 16 17 C -0.13 -1.83 10.53 -26.74 -0.28 -2.11 16 18 C -0.01 -0.21 4.93 -104.62 -0.52 -0.73 16 19 C -0.11 -2.46 9.67 -39.58 -0.38 -2.85 16 20 C -0.13 -2.51 10.05 -39.58 -0.40 -2.90 16 21 C -0.16 -2.82 10.05 -39.58 -0.40 -3.22 16 22 C -0.13 -2.47 10.05 -39.58 -0.40 -2.87 16 23 C -0.11 -2.35 9.28 -39.58 -0.37 -2.71 16 24 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 25 H 0.33 6.66 7.64 -39.29 -0.30 6.36 16 26 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 27 H 0.09 1.43 8.09 -51.93 -0.42 1.01 16 28 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.09 1.07 8.14 -51.92 -0.42 0.65 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.09 1.42 8.14 -51.92 -0.42 1.00 16 32 H 0.12 2.72 8.00 -52.49 -0.42 2.30 16 33 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 34 H 0.10 1.56 8.06 -52.48 -0.42 1.14 16 35 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 36 H 0.11 2.13 7.41 -52.49 -0.39 1.74 16 LS Contribution 309.02 15.07 4.66 4.66 Total: -1.00 -26.69 309.02 -10.58 -37.27 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -5.19 Total: 12.14 kcal Atomic # 6 Polarization: -27.24 SS G_CDS: -5.11 Total: -32.35 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.09 Total: -37.33 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -26.69 -10.58 -37.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715235275.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.416 kcal (2) G-P(sol) polarization free energy of solvation -26.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds